2KVVA

Solution nmr of putative excisionase from klebsiella pneumoniae, northeast structural genomics consortium target target kpr49
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
78
structure length
78
Chain Sequence
MAQIIFNEEWMVEKALMVRTGLGARQIESYRQGAWIEGVHFKRVSPSGEKTLRGTTWYNYPEINKFIRDSLEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Putative excisionase
publication title Northeast Structural Genomics Consortium Target KpR49
rcsb
source organism Klebsiella pneumoniae
total genus 15
structure length 78
sequence length 78
ec nomenclature
pdb deposition date 2010-03-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF06806 DUF1233 Putative excisionase (DUF1233)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1660.60 Mainly Alpha Orthogonal Bundle Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 2kvvA00
2KVVA
chains in the Genus database with same CATH superfamily
3EZFA 1EXJA 1PM6A 1RH6A 1Q06A 5I41B 1Q08A 3EZ9A 4R24B 3GPVA 5D90A 1JBGA 4R4EA 3IAOA 4WLSA 3HH0A 2JMLA 2DG6A 4WLWA 1Q09A 5I44A 2OG0A 3EZ6A 3Q1MA 3Q3DA 2KVVA 2ZHHA 3UCSA 1LX8A 3D6YA 5D8CA 4R22B 1R8EA 3EZ2A 3Q5RA 1Q0AA 1Q05A 4J2NA 1EXIA 1R8DA 2VZ4A 2IEFA 4DCZA 3EZ7A 3Q2YA 3Q5SA 3GP4A 2ZHGA 3Q5PA 1Y6UA 3D70A 4LHFA 5E01A 3D6ZA 1Q07A 3D71A 3QAOA
chains in the Genus database with same CATH topology
3EZFA 1EXJA 1PM6A 1RH6A 1Q06A 5I41B 1Q08A 3EZ9A 4R24B 3GPVA 5D90A 1JBGA 4R4EA 3IAOA 4WLSA 3HH0A 2JMLA 2DG6A 4WLWA 1Q09A 5I44A 2OG0A 3EZ6A 3Q1MA 3Q3DA 2KVVA 2ZHHA 3UCSA 1LX8A 3D6YA 5D8CA 4R22B 1R8EA 3EZ2A 3Q5RA 1Q0AA 1Q05A 4J2NA 1EXIA 1R8DA 2VZ4A 2IEFA 4DCZA 3EZ7A 3Q2YA 3Q5SA 3GP4A 2ZHGA 3Q5PA 1Y6UA 3D70A 4LHFA 5E01A 3D6ZA 1Q07A 3D71A 3QAOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KVV A; 
#chains in the Genus database with same CATH topology
 3EZF A;  1EXJ A;  1PM6 A;  1RH6 A;  1Q06 A;  5I41 B;  1Q08 A;  3EZ9 A;  4R24 B;  3GPV A;  5D90 A;  1JBG A;  4R4E A;  3IAO A;  4WLS A;  3HH0 A;  2JML A;  2DG6 A;  4WLW A;  1Q09 A;  5I44 A;  2OG0 A;  3EZ6 A;  3Q1M A;  3Q3D A;  2KVV A;  2ZHH A;  3UCS A;  1LX8 A;  3D6Y A;  5D8C A;  4R22 B;  1R8E A;  3EZ2 A;  3Q5R A;  1Q0A A;  1Q05 A;  4J2N A;  1EXI A;  1R8D A;  2VZ4 A;  2IEF A;  4DCZ A;  3EZ7 A;  3Q2Y A;  3Q5S A;  3GP4 A;  2ZHG A;  3Q5P A;  1Y6U A;  3D70 A;  4LHF A;  5E01 A;  3D6Z A;  1Q07 A;  3D71 A;  3QAO A; 
#chains in the Genus database with same CATH homology
 3EZF A;  1EXJ A;  1PM6 A;  1RH6 A;  1Q06 A;  5I41 B;  1Q08 A;  3EZ9 A;  4R24 B;  3GPV A;  5D90 A;  1JBG A;  4R4E A;  3IAO A;  4WLS A;  3HH0 A;  2JML A;  2DG6 A;  4WLW A;  1Q09 A;  5I44 A;  2OG0 A;  3EZ6 A;  3Q1M A;  3Q3D A;  2KVV A;  2ZHH A;  3UCS A;  1LX8 A;  3D6Y A;  5D8C A;  4R22 B;  1R8E A;  3EZ2 A;  3Q5R A;  1Q0A A;  1Q05 A;  4J2N A;  1EXI A;  1R8D A;  2VZ4 A;  2IEF A;  4DCZ A;  3EZ7 A;  3Q2Y A;  3Q5S A;  3GP4 A;  2ZHG A;  3Q5P A;  1Y6U A;  3D70 A;  4LHF A;  5E01 A;  3D6Z A;  1Q07 A;  3D71 A;  3QAO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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