The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
25
|
sequence length |
87
|
structure length |
87
|
Chain Sequence |
GVRKGWHEHVTQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAEKIYKIQKELEEKRRSRL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Transcription
|
| molecule keywords |
CREB-binding protein
|
| publication title |
The structure of E-protein activation domain 1 bound to the KIX domain of CBP/p300 elucidates leukemia induction by E2A-PBX1
rcsb |
| source organism |
Homo sapiens
|
| total genus |
25
|
| structure length |
87
|
| sequence length |
87
|
| ec nomenclature |
ec
2.3.1.48: Histone acetyltransferase. |
| pdb deposition date | 2010-04-08 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02172 | KIX | KIX domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Serum Albumin; Chain A, Domain 1 | Coactivator CBP, KIX domain |
#chains in the Genus database with same CATH superfamily 2LXT A; 4I9O A; 2LXS A; 1KDX A; 2KWF A; 1SB0 A; 2AGH B; 2GUT A; 2K0N A; 2LQH A; 4D7X A; 2LQI A; #chains in the Genus database with same CATH topology 2BXN A; 4N0U D; 2BXC A; 1H5W A; 1E7I A; 1VZS A; 2I2Z A; 1E7A A; 4L9K A; 4BKE A; 2BXP A; 1J78 A; 1E7G A; 2YDF A; 1MM8 A; 3ICX A; 3NVK A; 4DHX B; 4JK4 A; 4IW1 A; 1BKE A; 4HGK A; 4NAW B; 3B9L A; 4N3Z A; 3FWB C; 5IJE A; 4FK5 B; 4S1Y A; 2BXG A; 5ID9 A; 1MIY A; 3G9K D; 2XW0 A; 1HA2 A; 2BXA A; 2LQH A; 4D7X A; 2VDB A; 1KW2 A; 4N0F D; 1MIW A; 3V08 A; 5GIP A; 3GQX A; 4J2V A; 4ZCG A; 1HK3 A; 1E7B A; 3NVI A; 3SIV B; 1HK5 A; 2XVV A; 1JNB A; 4G03 A; 4HGM B; 4LA0 A; 1GNJ A; 5FUO A; 2LQI A; 3WHS A; 1KDX A; 1N5U A; 3MHH B; 4OR0 A; 2DYM A; 2BXL A; 2DBU A; 3V09 A; 2VUE A; 5ID7 A; 2V36 A; 4ZBR A; 1HK4 A; 2GUT A; 3VQI A; 3KIK A; 5IIH A; 3H37 A; 4M70 B; 4DM0 A; 3BPJ A; 2DYO A; 2BXE A; 2CKX A; 2LOQ A; 4OT2 A; 4C31 B; 2OZB B; 1O9X A; 1E78 A; 2NQO A; 1H9Z A; 5BPK A; 2EFD A; 4K71 A; 4TQ1 A; 1BJ5 A; 1BM0 A; 1IJG A; 4GDL B; 2BXB A; 4LB9 A; 3A75 A; 1LOT A; 2KBZ A; 4W4U B; 2BXK A; 2EFH A; 2XW1 A; 1MUH A; 2I30 A; 4ZBK A; 1VFI A; 3CX9 A; 2EFC A; 2XVQ A; 4GDK B; 4L8U A; 4FIP B; 2QHB A; 3PLA A; 3UIV A; 3KJL A; 2E0Y A; 2OT3 A; 3SQJ A; 4GG2 A; 1UOR A; 3LU8 A; 5GHK A; 1E7E A; 2Z8K A; 1NT2 B; 3JRY A; 3V03 A; 4G01 A; 4OTU A; 3WHR A; 3GA9 L; 2LXS A; 2XVU A; 2DBX A; 4IW2 A; 1GNI A; 2BXI A; 4FJC B; 5IIU A; 4MBE C; 5IJF A; 3LU6 A; 2AJE A; 1MUS A; 3SIU B; 3FWC C; 2DG5 A; 1TF0 A; 2Z8J A; 1E7F A; 1MA9 A; 1SB0 A; 2BXO A; 1E7H A; 4Z69 A; 4PO0 A; 3H3A A; 1AO6 A; 2QMC A; 2BXD A; 3JQZ A; 4F5S A; 1FOU A; 5GIO A; 2DBW A; 2JUH A; 2LXT A; 3FNM A; 5B5T A; 4K2C A; 4TQ0 A; 2BX8 A; 4F5U A; 3NVM A; 4EMX A; 2K0N A; 4F5V A; 1HK2 A; 2VUF A; 2ROH A; 1TXU A; 5IJ5 A; 3TDL A; 2XMO A; 3GQU A; 4I9O A; 3WHQ A; 5DBY A; 4LUH A; 4E99 A; 2KWF A; 2NNW A; 2QM6 A; 3ECP A; 2BXF A; 3LU7 A; 1MIV A; 2XSI A; 3W1S A; 4ZC6 A; 4BY9 C; 3B9M A; 2Z8I A; 2AGH B; 2EFE A; 5GIN A; 2XVW A; 4WA6 B; 1KXP D; 4G04 A; 4OTT A; 4F5T A; 4GDX A; 1HK1 A; 2BXQ A; 5IFO A; 5HOZ A; 1E7C A; 2E0X A; 5IIX A; 1LNS A; 2BXM A; 3M99 C; 4LUF A; 4L9Q A; 2BXH A; 4LB2 A; 3NMU A; 1J7E A; 5D7G A; 3A73 A; 4Z9O A; 5DQF A; 3MHS B; 4ZBQ A; 4ZUX V; #chains in the Genus database with same CATH homology 2LXT A; 4I9O A; 2LXS A; 1KDX A; 2KWF A; 1SB0 A; 2AGH B; 2GUT A; 2K0N A; 2LQH A; 4D7X A; 2LQI A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
