2KXPA

Solution nmr structure of v-1 bound to capping protein (cp)
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
275
structure length
275
Chain Sequence
RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution NMR structure of V-1 bound to capping protein (CP)
rcsb
source organism Gallus gallus
molecule tags Protein binding
molecule keywords F-actin-capping protein subunit alpha-1
total genus 55
structure length 275
sequence length 275
ec nomenclature
pdb deposition date 2010-05-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 2kxpA01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 2kxpA02
1IZNA 5AFUK 3AA7A 3LK3B 3LK2B 3AAEA 3LK2A 3AA6B 2KZ7B 3AA0A 2KZ7A 5ADXL 4AKRB 5AFUL 1IZNB 3LK42 3AA1B 3AA7B 3AA6A 3AAEB 3AA1A 3LK41 3AA0B 2KXPA 3AAAA 3AAAB 5ADXK 2KXPB 4AKRA 3LK3A
chains in the Genus database with same CATH superfamily
3PRNA 1Q9FA 1Q9GA 2OMFA 2FGRA 1BT9A 4FZNA 5E79O 4UB6O 1P8CA 4FUVA 2N2LA 4O4XA 3AA7A 4UB8O 3LK3B 3UPGA 1BXWA 4RL9A 3AAEA 1ZHXA 3AA6B 4N74A 1GFNA 2GMYA 4K3CA 5T5FA 4FSOA 2F1VA 3HOEA 5G3AA 3RBHA 3SY9A 2R4PA 5B66O 2X27X 2XE5A 3PGUA 2WJRA 3EMNX 5G26A 2AF7A 5GV0A 3A2SX 1QJ8A 4FESA 2JN8A 5PRNA 3V8UA 3WU2O 2OUWA 5JDPA 3LK42 5H2FO 1MM4A 4JFBA 4AFKA 4GCQA 3VE1A 2CWQA 2R89A 4FOZA 4LSHA 4AYNA 1ZHWA 1LW1A 4PR7A 4C4VA 3BRZA 3KZIO 1BH3A 3NSGA 4C4VB 3C5OA 4B61A 1H6S1 3VY8X 2QEUA 3BS0A 2KXPA 3VZWX 6PRNA 2GE4A 4Z3TA 4BUMX 3DWOX 3PQUA 1GFOA 2W80C 1OPFA 4QQ1A 4N59A 3HOLA 4RJXA 3WI5A 2R4LA 4GHBA 2J4UP 1GFMA 5D5DA 3VZUX 3FYXA 1VKEA 2IWVA 2YPVA 2O4DA 3LVYA 4FMSA 2XE3A 4GF4A 1MPFA 3O0EA 4N58A 4D64A 4XNKA 4FZLA 4E1TA 5IYUA 3T20A 4O3XB 4O3ZA 5GTHO 2O4VA 2ZLDA 4CTDA 3POXA 3QRCA 1IZNB 3G7GA 1ORMA 4KR8A 5KAFO 3C1LA 4AUIA 1MM5A 2N2MA 2YNKA 3AA7B 2X9KA 4K3BA 3UU2A 2PFXA 1HXXA 3JCUO 3TZGA 1PHOA 5FVNA 3POUA 2Y7SA 1ZHZA 3AAAA 2Y0KA 4RLBA 4RLCA 2KXPB 4AYMC 4C00A 5G39A 3LK3A 1QJPA 3BEYA 2FGQX 4FT6A 4O4UA 5DL6A 3T0SA 1ME5A 3JTYA 2R8AA 5GTIO 4D5UA 2XG6A 4KRAA 3DA4A 3LK2B 4FSPA 1HXTA 1GFQA 2JMMA 2XTRA 3GP6A 4G76A 1YS5A 2KZ7B 3PORA 4AYDC 5KAIO 3AA0A 3SZDA 4D65A 2K4TA 3PGRA 1T16A 2AXTO 3BRYA 5DIPA 4IL6O 1ZHTA 3VE2A 4AKRB 2R4OA 4O3YA 1PRNA 3WI4A 5ADXL 2M07A 5G38A 2R4NA 2ZFGA 2WJQA 2ODJA 3T24A 4AKMA 2IJCA 4G9QA 2W81C 3AA1B 2M06A 2Y2XA 4PUXA 1T1LA 5EE2A 4XNLA 3AA6A 3AAEB 5B5EO 2KC0A 4C69X 4G75A 1P4TA 4LSFA 2XE2A 5DL5A 3SYBA 5DIKA 4U9CA 1GFPA 2IWWA 2J1NA 4FRTA 4LSIA 3UAQA 3DA3A 2K0LA 2JQYA 5ADXK 2LFUA 2PORA 3AAAB 2XMXA 3NJTA 3SY7A 3DZMA 4AYEC 4FQEA 1IZNA 5AFUK 2XTQA 2WVPA 3SZVA 2PRRA 3D7IA 3KVDD 3DWNA 4RJWA 5DL7A 4E1SA 3LK2A 1G90A 4AZLA 4N75A 4AYID 2F1CX 2PRNA 4LSEA 1ZHYA 1GU9A 2KDYA 2KZ7A 3A0BO 3PF1A 2QTKA 1HXUA 2F1TA 1E54A 2ES9A 2OYOA 1KNCA 1S5LO 5DL8A 3VZTX 5AFUL 2LHFA 2XE1A 3K19A 4FZMA 3HW9A 2Y0LA 3A0HO 4FRXA 3PGSA 2Q0TA 4PJ0O 3VY9X 2Y0HA 1OSMA 3PQSA 2MNHA 5TISO 2R88A 3HWBA 4KR4A 4F4BA 3AA1A 3LK41 2ERVA 3AA0B 7PRNA 3QRAA 3POQA 4GCPA 4GCSA 4O3WA 4JCHA 3SYSA 8PRNA 2MHLA 1THQA 1QJ9A 4AKRA 4O49A
chains in the Genus database with same CATH topology
3PRNA 1Q9FA 1Q9GA 2OMFA 2FGRA 1BT9A 4FZNA 1P8CA 4FUVA 2N2LA 4O4XA 3AA7A 3UPGA 3LK3B 1BXWA 4RL9A 3AAEA 1ZHXA 3AA6B 1GFNA 2GMYA 5T5FA 4FSOA 2F1VA 3HOEA 3RBHA 3SY9A 2X27X 2XE5A 3EMNX 5G26A 2AF7A 3A2SX 1QJ8A 4FESA 2JN8A 5PRNA 3V8UA 2OUWA 5JDPA 3LK42 1MM4A 4JFBA 4AFKA 4GCQA 3VE1A 2CWQA 4LSHA 4FOZA 4AYNA 1ZHWA 1LW1A 3NSGA 1BH3A 3C5OA 4B61A 1H6S1 3VY8X 2QEUA 6PRNA 2KXPA 3VZWX 2GE4A 4Z3TA 4BUMX 3PQUA 1GFOA 2W80C 1OPFA 4QQ1A 4N59A 3HOLA 4RJXA 3WI5A 4GHBA 2J4UP 1GFMA 5D5DA 3VZUX 3FYXA 1VKEA 2YPVA 4GF4A 2O4DA 3LVYA 4FMSA 2XE3A 4N58A 1MPFA 3O0EA 4D64A 4E1TA 4XNKA 4FZLA 5IYUA 3T20A 4O3XB 4O3ZA 2O4VA 2ZLDA 3POXA 3QRCA 1IZNB 3G7GA 1ORMA 4KR8A 3C1LA 4AUIA 1MM5A 2N2MA 2YNKA 3AA7B 3UU2A 2PFXA 1HXXA 3TZGA 1PHOA 5FVNA 3POUA 2Y7SA 1ZHZA 3AAAA 2Y0KA 4RLBA 4RLCA 2KXPB 4AYMC 3LK3A 2FGQX 1QJPA 3BEYA 4FT6A 4O4UA 5DL6A 3T0SA 1ME5A 3JTYA 2XG6A 4KRAA 3DA4A 3LK2B 4FSPA 1HXTA 1GFQA 2JMMA 2XTRA 3GP6A 4G76A 1YS5A 2KZ7B 3PORA 4AYDC 3AA0A 3SZDA 4D65A 2K4TA 5DIPA 1ZHTA 3VE2A 4AKRB 4O3YA 3WI4A 1PRNA 5ADXL 2M07A 2ZFGA 3T24A 2ODJA 4AKMA 2IJCA 4G9QA 2W81C 3AA1B 2M06A 2Y2XA 4PUXA 5EE2A 4XNLA 3AA6A 3AAEB 2KC0A 4C69X 4G75A 1P4TA 4LSFA 2XE2A 5DL5A 3SYBA 5DIKA 4U9CA 1GFPA 2J1NA 4FRTA 4LSIA 3UAQA 3DA3A 2K0LA 4D5UA 5ADXK 2LFUA 2PORA 3AAAB 2XMXA 3SY7A 4AYEC 4AYID 5GV0A 1IZNA 5AFUK 2XTQA 3SZVA 2PRRA 3D7IA 3KVDD 4RJWA 5DL7A 4E1SA 1G90A 3LK2A 4AZLA 2PRNA 4LSEA 1ZHYA 1GU9A 2KDYA 2KZ7A 2QTKA 1HXUA 2F1TA 1E54A 2ES9A 2OYOA 1KNCA 5DL8A 3VZTX 5AFUL 2LHFA 2XE1A 3K19A 4FZMA 3HW9A 2Y0LA 4FRXA 2Q0TA 3VY9X 2Y0HA 1OSMA 3PQSA 2MNHA 3HWBA 4KR4A 4F4BA 3AA1A 3LK41 2ERVA 3AA0B 7PRNA 3QRAA 3POQA 4GCPA 4GCSA 4O3WA 4JCHA 3SYSA 8PRNA 2MHLA 1THQA 1QJ9A 4AKRA 4O49A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IZN A;  5AFU K;  3AA7 A;  3LK3 B;  3LK2 B;  3AAE A;  3LK2 A;  3AA6 B;  2KZ7 B;  3AA0 A;  2KZ7 A;  5ADX L;  4AKR B;  5AFU L;  1IZN B;  3LK4 2;  3AA1 B;  3AA7 B;  3AA6 A;  3AAE B;  3AA1 A;  3LK4 1;  3AA0 B;  2KXP A;  3AAA A;  3AAA B;  5ADX K;  2KXP B;  4AKR A;  3LK3 A; 
#chains in the Genus database with same CATH topology
 3PRN A;  1Q9F A;  1Q9G A;  2OMF A;  2FGR A;  1BT9 A;  4FZN A;  5E79 O;  4UB6 O;  1P8C A;  4FUV A;  2N2L A;  4O4X A;  3AA7 A;  4UB8 O;  3LK3 B;  3UPG A;  1BXW A;  4RL9 A;  3AAE A;  1ZHX A;  3AA6 B;  4N74 A;  1GFN A;  2GMY A;  4K3C A;  5T5F A;  4FSO A;  2F1V A;  3HOE A;  5G3A A;  3RBH A;  3SY9 A;  2R4P A;  5B66 O;  2X27 X;  2XE5 A;  3PGU A;  2WJR A;  3EMN X;  5G26 A;  2AF7 A;  5GV0 A;  3A2S X;  1QJ8 A;  4FES A;  2JN8 A;  5PRN A;  3V8U A;  3WU2 O;  2OUW A;  5JDP A;  3LK4 2;  5H2F O;  1MM4 A;  4JFB A;  4AFK A;  4GCQ A;  3VE1 A;  2CWQ A;  2R89 A;  4FOZ A;  4LSH A;  4AYN A;  1ZHW A;  1LW1 A;  4PR7 A;  4C4V A;  3BRZ A;  3KZI O;  1BH3 A;  3NSG A;  4C4V B;  3C5O A;  4B61 A;  1H6S 1;  3VY8 X;  2QEU A;  3BS0 A;  2KXP A;  3VZW X;  6PRN A;  2GE4 A;  4Z3T A;  4BUM X;  3DWO X;  3PQU A;  1GFO A;  2W80 C;  1OPF A;  4QQ1 A;  4N59 A;  3HOL A;  4RJX A;  3WI5 A;  2R4L A;  4GHB A;  2J4U P;  1GFM A;  5D5D A;  3VZU X;  3FYX A;  1VKE A;  2IWV A;  2YPV A;  2O4D A;  3LVY A;  4FMS A;  2XE3 A;  4GF4 A;  1MPF A;  3O0E A;  4N58 A;  4D64 A;  4XNK A;  4FZL A;  4E1T A;  5IYU A;  3T20 A;  4O3X B;  4O3Z A;  5GTH O;  2O4V A;  2ZLD A;  4CTD A;  3POX A;  3QRC A;  1IZN B;  3G7G A;  1ORM A;  4KR8 A;  5KAF O;  3C1L A;  4AUI A;  1MM5 A;  2N2M A;  2YNK A;  3AA7 B;  2X9K A;  4K3B A;  3UU2 A;  2PFX A;  1HXX A;  3JCU O;  3TZG A;  1PHO A;  5FVN A;  3POU A;  2Y7S A;  1ZHZ A;  3AAA A;  2Y0K A;  4RLB A;  4RLC A;  2KXP B;  4AYM C;  4C00 A;  5G39 A;  3LK3 A;  1QJP A;  3BEY A;  2FGQ X;  4FT6 A;  4O4U A;  5DL6 A;  3T0S A;  1ME5 A;  3JTY A;  2R8A A;  5GTI O;  4D5U A;  2XG6 A;  4KRA A;  3DA4 A;  3LK2 B;  4FSP A;  1HXT A;  1GFQ A;  2JMM A;  2XTR A;  3GP6 A;  4G76 A;  1YS5 A;  2KZ7 B;  3POR A;  4AYD C;  5KAI O;  3AA0 A;  3SZD A;  4D65 A;  2K4T A;  3PGR A;  1T16 A;  2AXT O;  3BRY A;  5DIP A;  4IL6 O;  1ZHT A;  3VE2 A;  4AKR B;  2R4O A;  4O3Y A;  1PRN A;  3WI4 A;  5ADX L;  2M07 A;  5G38 A;  2R4N A;  2ZFG A;  2WJQ A;  2ODJ A;  3T24 A;  4AKM A;  2IJC A;  4G9Q A;  2W81 C;  3AA1 B;  2M06 A;  2Y2X A;  4PUX A;  1T1L A;  5EE2 A;  4XNL A;  3AA6 A;  3AAE B;  5B5E O;  2KC0 A;  4C69 X;  4G75 A;  1P4T A;  4LSF A;  2XE2 A;  5DL5 A;  3SYB A;  5DIK A;  4U9C A;  1GFP A;  2IWW A;  2J1N A;  4FRT A;  4LSI A;  3UAQ A;  3DA3 A;  2K0L A;  2JQY A;  5ADX K;  2LFU A;  2POR A;  3AAA B;  2XMX A;  3NJT A;  3SY7 A;  3DZM A;  4AYE C;  4FQE A;  1IZN A;  5AFU K;  2XTQ A;  2WVP A;  3SZV A;  2PRR A;  3D7I A;  3KVD D;  3DWN A;  4RJW A;  5DL7 A;  4E1S A;  3LK2 A;  1G90 A;  4AZL A;  4N75 A;  4AYI D;  2F1C X;  2PRN A;  4LSE A;  1ZHY A;  1GU9 A;  2KDY A;  2KZ7 A;  3A0B O;  3PF1 A;  2QTK A;  1HXU A;  2F1T A;  1E54 A;  2ES9 A;  2OYO A;  1KNC A;  1S5L O;  5DL8 A;  3VZT X;  5AFU L;  2LHF A;  2XE1 A;  3K19 A;  4FZM A;  3HW9 A;  2Y0L A;  3A0H O;  4FRX A;  3PGS A;  2Q0T A;  4PJ0 O;  3VY9 X;  2Y0H A;  1OSM A;  3PQS A;  2MNH A;  5TIS O;  2R88 A;  3HWB A;  4KR4 A;  4F4B A;  3AA1 A;  3LK4 1;  2ERV A;  3AA0 B;  7PRN A;  3QRA A;  3POQ A;  4GCP A;  4GCS A;  4O3W A;  4JCH A;  3SYS A;  8PRN A;  2MHL A;  1THQ A;  1QJ9 A;  4AKR A;  4O49 A; 
#chains in the Genus database with same CATH homology
 3PRN A;  1Q9F A;  1Q9G A;  2OMF A;  2FGR A;  1BT9 A;  4FZN A;  1P8C A;  4FUV A;  2N2L A;  4O4X A;  3AA7 A;  3UPG A;  3LK3 B;  1BXW A;  4RL9 A;  3AAE A;  1ZHX A;  3AA6 B;  1GFN A;  2GMY A;  5T5F A;  4FSO A;  2F1V A;  3HOE A;  3RBH A;  3SY9 A;  2X27 X;  2XE5 A;  3EMN X;  5G26 A;  2AF7 A;  3A2S X;  1QJ8 A;  4FES A;  2JN8 A;  5PRN A;  3V8U A;  2OUW A;  5JDP A;  3LK4 2;  1MM4 A;  4JFB A;  4AFK A;  4GCQ A;  3VE1 A;  2CWQ A;  4LSH A;  4FOZ A;  4AYN A;  1ZHW A;  1LW1 A;  3NSG A;  1BH3 A;  3C5O A;  4B61 A;  1H6S 1;  3VY8 X;  2QEU A;  6PRN A;  2KXP A;  3VZW X;  2GE4 A;  4Z3T A;  4BUM X;  3PQU A;  1GFO A;  2W80 C;  1OPF A;  4QQ1 A;  4N59 A;  3HOL A;  4RJX A;  3WI5 A;  4GHB A;  2J4U P;  1GFM A;  5D5D A;  3VZU X;  3FYX A;  1VKE A;  2YPV A;  4GF4 A;  2O4D A;  3LVY A;  4FMS A;  2XE3 A;  4N58 A;  1MPF A;  3O0E A;  4D64 A;  4E1T A;  4XNK A;  4FZL A;  5IYU A;  3T20 A;  4O3X B;  4O3Z A;  2O4V A;  2ZLD A;  3POX A;  3QRC A;  1IZN B;  3G7G A;  1ORM A;  4KR8 A;  3C1L A;  4AUI A;  1MM5 A;  2N2M A;  2YNK A;  3AA7 B;  3UU2 A;  2PFX A;  1HXX A;  3TZG A;  1PHO A;  5FVN A;  3POU A;  2Y7S A;  1ZHZ A;  3AAA A;  2Y0K A;  4RLB A;  4RLC A;  2KXP B;  4AYM C;  3LK3 A;  2FGQ X;  1QJP A;  3BEY A;  4FT6 A;  4O4U A;  5DL6 A;  3T0S A;  1ME5 A;  3JTY A;  2XG6 A;  4KRA A;  3DA4 A;  3LK2 B;  4FSP A;  1HXT A;  1GFQ A;  2JMM A;  2XTR A;  3GP6 A;  4G76 A;  1YS5 A;  2KZ7 B;  3POR A;  4AYD C;  3AA0 A;  3SZD A;  4D65 A;  2K4T A;  5DIP A;  1ZHT A;  3VE2 A;  4AKR B;  4O3Y A;  3WI4 A;  1PRN A;  5ADX L;  2M07 A;  2ZFG A;  3T24 A;  2ODJ A;  4AKM A;  2IJC A;  4G9Q A;  2W81 C;  3AA1 B;  2M06 A;  2Y2X A;  4PUX A;  5EE2 A;  4XNL A;  3AA6 A;  3AAE B;  2KC0 A;  4C69 X;  4G75 A;  1P4T A;  4LSF A;  2XE2 A;  5DL5 A;  3SYB A;  5DIK A;  4U9C A;  1GFP A;  2J1N A;  4FRT A;  4LSI A;  3UAQ A;  3DA3 A;  2K0L A;  4D5U A;  5ADX K;  2LFU A;  2POR A;  3AAA B;  2XMX A;  3SY7 A;  4AYE C;  4AYI D;  5GV0 A;  1IZN A;  5AFU K;  2XTQ A;  3SZV A;  2PRR A;  3D7I A;  3KVD D;  4RJW A;  5DL7 A;  4E1S A;  1G90 A;  3LK2 A;  4AZL A;  2PRN A;  4LSE A;  1ZHY A;  1GU9 A;  2KDY A;  2KZ7 A;  2QTK A;  1HXU A;  2F1T A;  1E54 A;  2ES9 A;  2OYO A;  1KNC A;  5DL8 A;  3VZT X;  5AFU L;  2LHF A;  2XE1 A;  3K19 A;  4FZM A;  3HW9 A;  2Y0L A;  4FRX A;  2Q0T A;  3VY9 X;  2Y0H A;  1OSM A;  3PQS A;  2MNH A;  3HWB A;  4KR4 A;  4F4B A;  3AA1 A;  3LK4 1;  2ERV A;  3AA0 B;  7PRN A;  3QRA A;  3POQ A;  4GCP A;  4GCS A;  4O3W A;  4JCH A;  3SYS A;  8PRN A;  2MHL A;  1THQ A;  1QJ9 A;  4AKR A;  4O49 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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