2KXPA

Solution nmr structure of v-1 bound to capping protein (cp)
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
275
structure length
275
Chain Sequence
b'RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords F-actin-capping protein subunit alpha-1
publication title Solution NMR structure of V-1 bound to capping protein (CP)
rcsb
source organism Gallus gallus
molecule tags Protein binding
total genus 55
structure length 275
sequence length 275
ec nomenclature
pdb deposition date 2010-05-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 2kxpA01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 2kxpA02
3LK42 3AA7A 5AFUK 4AKRB 3AAAB 2KZ7A 3LK3B 3LK2B 5ADXK 3AA1B 3AA6B 1IZNB 2KXPA 3AAEB 4AKRA 3AA0B 3AAAA 2KXPB 3AA1A 3LK3A 3LK41 3AA6A 3LK2A 1IZNA 3AAEA 5AFUL 3AA7B 3AA0A 5ADXL 2KZ7B
chains in the Genus database with same CATH superfamily
3NJTA 1E54A 5FVNA 1QJPA 8PRNA 1GFPA 2QEUA 2J4UP 3SZVA 5B66O 4C00A 3LVYA 2F1VA 2O4VA 4RLBA 3PQSA 3WI4A 4G75A 4GHBA 4AYEC 2MHLA 5GTIO 2Y0HA 2KXPA 1MM5A 3AAEB 4PUXA 4UB8O 5IYUA 1ZHTA 3A0BO 2FGRA 2XE3A 3LK41 1GFOA 4FOZA 2ZLDA 1HXTA 3UAQA 5EE2A 1ORMA 1G90A 3NSGA 1QJ9A 2R8AA 4JFBA 4B61A 3C5OA 1OPFA 3AA1A 4FESA 2WJQA 4D65A 2R88A 3LK42 3SYSA 2WJRA 3PGSA 4AKRB 3VZWX 3SY7A 3JTYA 2M07A 3SY9A 4AYDC 3K19A 3BRYA 3BEYA 1THQA 4AKRA 4O4XA 5JDPA 4N58A 3DWOX 4RLCA 1BXWA 3QRCA 2XG6A 5G26A 3KZIO 4GCPA 1GFMA 2JN8A 4O3ZA 2GE4A 1ZHWA 4O3WA 4E1TA 2R4OA 3HOEA 5G39A 5AFUL 3DA4A 4N59A 2OYOA 1YS5A 4O3XB 5AFUK 5DL7A 4LSIA 5G3AA 3POUA 3LK2B 4UB6O 5DL5A 4O3YA 4U9CA 3LK2A 2Y2XA 4Z3TA 4LSHA 5B5EO 4LSFA 2Y0KA 3T20A 1T1LA 3TZGA 5D5DA 4CTDA 2JQYA 1ZHXA 3UU2A 2W80C 2XE2A 3AA7A 3DA3A 3AA1B 3A0HO 4FT6A 5H2FO 3PRNA 3PORA 4KR8A 2PFXA 1GU9A 4D5UA 4XNKA 2PRNA 4N75A 3BRZA 5E79O 5ADXL 2IWWA 4XNLA 2PORA 5GTHO 3HWBA 3PGUA 2K0LA 2XTQA 5DIKA 3VZUX 4GCQA 3WI5A 1OSMA 4KR4A 2X9KA 2O4DA 2YNKA 3HOLA 4K3CA 3RBHA 2ZFGA 3PGRA 4FZNA 3AAAB 3HW9A 4GCSA 2XTRA 4AYID 2IJCA 3T0SA 3AAAA 1HXUA 4F4BA 1BT9A 5DIPA 4JCHA 2XE1A 3VY8X 3UPGA 2F1TA 2X27X 2J1NA 3AA6B 4G9QA 3VY9X 4FZMA 4FZLA 2MNHA 7PRNA 5KAIO 3AA0B 2AF7A 2N2LA 4AZLA 3GP6A 1QJ8A 2CWQA 3AA6A 1MM4A 5KAFO 3AA0A 3DZMA 3POQA 4E1SA 2KC0A 4N74A 3BS0A 2R4LA 2ERVA 4GF4A 2OUWA 3O0EA 2XE5A 3LK3B 4RJWA 3VE2A 3SZDA 4FQEA 1P8CA 2PRRA 1GFQA 3LK3A 3PQUA 4FRTA 4FRXA 5PRNA 3AA7B 4FSPA 4AYNA 2YPVA 6PRNA 4C69X 3KVDD 1PHOA 4RL9A 5DL8A 3V8UA 2GMYA 5G38A 3EMNX 4O49A 3SYBA 2JMMA 2N2MA 3DWNA 2IWVA 4AFKA 1Q9GA 3T24A 3C1LA 2LFUA 3AAEA 4AYMC 1GFNA 1MPFA 1H6S1 4PR7A 4QQ1A 2KZ7B 3JCUO 1VKEA 2R89A 3QRAA 1KNCA 2Q0TA 2WVPA 4K3BA 4IL6O 2KZ7A 5ADXK 2Y0LA 1IZNB 2QTKA 2K4TA 2W81C 3VE1A 2XMXA 3FYXA 1IZNA 2FGQX 4D64A 3D7IA 3A2SX 2OMFA 1BH3A 4O4UA 3G7GA 2KDYA 2F1CX 1ZHZA 2AXTO 4AUIA 2R4NA 4KRAA 3WU2O 4G76A 1P4TA 3PF1A 4RJXA 2M06A 1ME5A 4FMSA 4FSOA 2LHFA 5TISO 4FUVA 1PRNA 4C4VB 5GV0A 1Q9FA 3VZTX 4AKMA 2ES9A 5T5FA 3POXA 4C4VA 1LW1A 4BUMX 5DL6A 1ZHYA 1T16A 1S5LO 4LSEA 2KXPB 2ODJA 2R4PA 2Y7SA 1HXXA 4PJ0O
chains in the Genus database with same CATH topology
2XG6A 4RL9A 5DL8A 4XNLA 5G26A 2PORA 3V8UA 1E54A 5FVNA 2GMYA 3EMNX 4GCPA 3HWBA 4O49A 1GFMA 3SYBA 1QJPA 2JMMA 2N2MA 8PRNA 2JN8A 1GFPA 4AFKA 2QEUA 1Q9GA 4O3ZA 3T24A 2J4UP 2GE4A 1ZHWA 3C1LA 3SZVA 2LFUA 4O3WA 2K0LA 4E1TA 2XTQA 5DIKA 3HOEA 3VZUX 4GCQA 3WI5A 1OSMA 4KR4A 3LVYA 3AAEA 4AYMC 2F1VA 3DA4A 1GFNA 1MPFA 2O4VA 5AFUL 2O4DA 4RLBA 1H6S1 3PQSA 4N59A 3WI4A 2OYOA 2YNKA 3HOLA 4QQ1A 2KZ7B 4G75A 1VKEA 4GHBA 1YS5A 3RBHA 2ZFGA 3QRAA 4O3XB 4AYEC 5AFUK 4FZNA 5DL7A 1KNCA 3AAAB 4LSIA 3HW9A 4GCSA 2Q0TA 2XTRA 4AYID 2MHLA 3POUA 2KZ7A 2Y0HA 5ADXK 3LK2B 2Y0LA 1IZNB 2IJCA 1MM5A 2K4TA 2QTKA 3AAEB 4PUXA 3T0SA 5IYUA 3AAAA 2W81C 3VE1A 1ZHTA 1HXUA 5DL5A 2FGRA 2XE3A 4F4BA 2XMXA 4O3YA 1BT9A 4U9CA 3FYXA 3LK2A 3LK41 5DIPA 1GFOA 1IZNA 2FGQX 2Y2XA 4Z3TA 4LSHA 4D64A 3D7IA 3A2SX 2OMFA 1BH3A 4LSFA 4JCHA 4O4UA 2Y0KA 2ZLDA 4FOZA 1HXTA 2XE1A 3G7GA 2KDYA 3UAQA 5EE2A 3VY8X 3T20A 1ZHZA 4AUIA 3UPGA 1ORMA 4KRAA 4C69X 1G90A 2F1TA 2X27X 4G76A 3NSGA 1P4TA 1QJ9A 3TZGA 2J1NA 4RLCA 4RJXA 5D5DA 3AA6B 2M06A 4G9QA 3VY9X 1ME5A 4FZMA 4FZLA 1ZHXA 2MNHA 7PRNA 3AA0B 2AF7A 4FMSA 2N2LA 4FSOA 4JFBA 4AZLA 3GP6A 3C5OA 1QJ8A 4B61A 1OPFA 3AA1A 2LHFA 2CWQA 3AA6A 4FESA 4FUVA 1PRNA 3UU2A 1MM4A 2W80C 5GV0A 3AA0A 1Q9FA 3POQA 3VZTX 2KC0A 4E1SA 4D65A 4AKMA 3LK42 2ES9A 2ERVA 3SYSA 2XE2A 4GF4A 2OUWA 5T5FA 3O0EA 3AA7A 4AKRB 3POXA 3VZWX 1LW1A 3SY7A 2XE5A 3JTYA 3LK3B 4BUMX 3DA3A 3AA1B 2M07A 4RJWA 5DL6A 3SY9A 3VE2A 4FT6A 3K19A 3SZDA 4AYDC 1ZHYA 3PORA 3PRNA 4KR8A 3BEYA 1THQA 4LSEA 2PFXA 1GU9A 4AKRA 4D5UA 4O4XA 1P8CA 4XNKA 2KXPB 2PRRA 1GFQA 2ODJA 5JDPA 3LK3A 3PQUA 4N58A 2PRNA 4FRTA 4FRXA 5PRNA 2Y7SA 1HXXA 3AA7B 4FSPA 4AYNA 2YPVA 6PRNA 1BXWA 5ADXL 3KVDD 1PHOA 2KXPA 3QRCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LK4 2;  3AA7 A;  5AFU K;  4AKR B;  3AAA B;  2KZ7 A;  3LK3 B;  3LK2 B;  5ADX K;  3AA1 B;  3AA6 B;  1IZN B;  2KXP A;  3AAE B;  4AKR A;  3AA0 B;  3AAA A;  2KXP B;  3AA1 A;  3LK3 A;  3LK4 1;  3AA6 A;  3LK2 A;  1IZN A;  3AAE A;  5AFU L;  3AA7 B;  3AA0 A;  5ADX L;  2KZ7 B; 
#chains in the Genus database with same CATH topology
 3NJT A;  1E54 A;  5FVN A;  1QJP A;  8PRN A;  1GFP A;  2QEU A;  2J4U P;  3SZV A;  5B66 O;  4C00 A;  3LVY A;  2F1V A;  2O4V A;  4RLB A;  3PQS A;  3WI4 A;  4G75 A;  4GHB A;  4AYE C;  2MHL A;  5GTI O;  2Y0H A;  2KXP A;  1MM5 A;  3AAE B;  4PUX A;  4UB8 O;  5IYU A;  1ZHT A;  3A0B O;  2FGR A;  2XE3 A;  3LK4 1;  1GFO A;  4FOZ A;  2ZLD A;  1HXT A;  3UAQ A;  5EE2 A;  1ORM A;  1G90 A;  3NSG A;  1QJ9 A;  2R8A A;  4JFB A;  4B61 A;  3C5O A;  1OPF A;  3AA1 A;  4FES A;  2WJQ A;  4D65 A;  2R88 A;  3LK4 2;  3SYS A;  2WJR A;  3PGS A;  4AKR B;  3VZW X;  3SY7 A;  3JTY A;  2M07 A;  3SY9 A;  4AYD C;  3K19 A;  3BRY A;  3BEY A;  1THQ A;  4AKR A;  4O4X A;  5JDP A;  4N58 A;  3DWO X;  4RLC A;  1BXW A;  3QRC A;  2XG6 A;  5G26 A;  3KZI O;  4GCP A;  1GFM A;  2JN8 A;  4O3Z A;  2GE4 A;  1ZHW A;  4O3W A;  4E1T A;  2R4O A;  3HOE A;  5G39 A;  5AFU L;  3DA4 A;  4N59 A;  2OYO A;  1YS5 A;  4O3X B;  5AFU K;  5DL7 A;  4LSI A;  5G3A A;  3POU A;  3LK2 B;  4UB6 O;  5DL5 A;  4O3Y A;  4U9C A;  3LK2 A;  2Y2X A;  4Z3T A;  4LSH A;  5B5E O;  4LSF A;  2Y0K A;  3T20 A;  1T1L A;  3TZG A;  5D5D A;  4CTD A;  2JQY A;  1ZHX A;  3UU2 A;  2W80 C;  2XE2 A;  3AA7 A;  3DA3 A;  3AA1 B;  3A0H O;  4FT6 A;  5H2F O;  3PRN A;  3POR A;  4KR8 A;  2PFX A;  1GU9 A;  4D5U A;  4XNK A;  2PRN A;  4N75 A;  3BRZ A;  5E79 O;  5ADX L;  2IWW A;  4XNL A;  2POR A;  5GTH O;  3HWB A;  3PGU A;  2K0L A;  2XTQ A;  5DIK A;  3VZU X;  4GCQ A;  3WI5 A;  1OSM A;  4KR4 A;  2X9K A;  2O4D A;  2YNK A;  3HOL A;  4K3C A;  3RBH A;  2ZFG A;  3PGR A;  4FZN A;  3AAA B;  3HW9 A;  4GCS A;  2XTR A;  4AYI D;  2IJC A;  3T0S A;  3AAA A;  1HXU A;  4F4B A;  1BT9 A;  5DIP A;  4JCH A;  2XE1 A;  3VY8 X;  3UPG A;  2F1T A;  2X27 X;  2J1N A;  3AA6 B;  4G9Q A;  3VY9 X;  4FZM A;  4FZL A;  2MNH A;  7PRN A;  5KAI O;  3AA0 B;  2AF7 A;  2N2L A;  4AZL A;  3GP6 A;  1QJ8 A;  2CWQ A;  3AA6 A;  1MM4 A;  5KAF O;  3AA0 A;  3DZM A;  3POQ A;  4E1S A;  2KC0 A;  4N74 A;  3BS0 A;  2R4L A;  2ERV A;  4GF4 A;  2OUW A;  3O0E A;  2XE5 A;  3LK3 B;  4RJW A;  3VE2 A;  3SZD A;  4FQE A;  1P8C A;  2PRR A;  1GFQ A;  3LK3 A;  3PQU A;  4FRT A;  4FRX A;  5PRN A;  3AA7 B;  4FSP A;  4AYN A;  2YPV A;  6PRN A;  4C69 X;  3KVD D;  1PHO A;  4RL9 A;  5DL8 A;  3V8U A;  2GMY A;  5G38 A;  3EMN X;  4O49 A;  3SYB A;  2JMM A;  2N2M A;  3DWN A;  2IWV A;  4AFK A;  1Q9G A;  3T24 A;  3C1L A;  2LFU A;  3AAE A;  4AYM C;  1GFN A;  1MPF A;  1H6S 1;  4PR7 A;  4QQ1 A;  2KZ7 B;  3JCU O;  1VKE A;  2R89 A;  3QRA A;  1KNC A;  2Q0T A;  2WVP A;  4K3B A;  4IL6 O;  2KZ7 A;  5ADX K;  2Y0L A;  1IZN B;  2QTK A;  2K4T A;  2W81 C;  3VE1 A;  2XMX A;  3FYX A;  1IZN A;  2FGQ X;  4D64 A;  3D7I A;  3A2S X;  2OMF A;  1BH3 A;  4O4U A;  3G7G A;  2KDY A;  2F1C X;  1ZHZ A;  2AXT O;  4AUI A;  2R4N A;  4KRA A;  3WU2 O;  4G76 A;  1P4T A;  3PF1 A;  4RJX A;  2M06 A;  1ME5 A;  4FMS A;  4FSO A;  2LHF A;  5TIS O;  4FUV A;  1PRN A;  4C4V B;  5GV0 A;  1Q9F A;  3VZT X;  4AKM A;  2ES9 A;  5T5F A;  3POX A;  4C4V A;  1LW1 A;  4BUM X;  5DL6 A;  1ZHY A;  1T16 A;  1S5L O;  4LSE A;  2KXP B;  2ODJ A;  2R4P A;  2Y7S A;  1HXX A;  4PJ0 O; 
#chains in the Genus database with same CATH homology
 2XG6 A;  4RL9 A;  5DL8 A;  4XNL A;  5G26 A;  2POR A;  3V8U A;  1E54 A;  5FVN A;  2GMY A;  3EMN X;  4GCP A;  3HWB A;  4O49 A;  1GFM A;  3SYB A;  1QJP A;  2JMM A;  2N2M A;  8PRN A;  2JN8 A;  1GFP A;  4AFK A;  2QEU A;  1Q9G A;  4O3Z A;  3T24 A;  2J4U P;  2GE4 A;  1ZHW A;  3C1L A;  3SZV A;  2LFU A;  4O3W A;  2K0L A;  4E1T A;  2XTQ A;  5DIK A;  3HOE A;  3VZU X;  4GCQ A;  3WI5 A;  1OSM A;  4KR4 A;  3LVY A;  3AAE A;  4AYM C;  2F1V A;  3DA4 A;  1GFN A;  1MPF A;  2O4V A;  5AFU L;  2O4D A;  4RLB A;  1H6S 1;  3PQS A;  4N59 A;  3WI4 A;  2OYO A;  2YNK A;  3HOL A;  4QQ1 A;  2KZ7 B;  4G75 A;  1VKE A;  4GHB A;  1YS5 A;  3RBH A;  2ZFG A;  3QRA A;  4O3X B;  4AYE C;  5AFU K;  4FZN A;  5DL7 A;  1KNC A;  3AAA B;  4LSI A;  3HW9 A;  4GCS A;  2Q0T A;  2XTR A;  4AYI D;  2MHL A;  3POU A;  2KZ7 A;  2Y0H A;  5ADX K;  3LK2 B;  2Y0L A;  1IZN B;  2IJC A;  1MM5 A;  2K4T A;  2QTK A;  3AAE B;  4PUX A;  3T0S A;  5IYU A;  3AAA A;  2W81 C;  3VE1 A;  1ZHT A;  1HXU A;  5DL5 A;  2FGR A;  2XE3 A;  4F4B A;  2XMX A;  4O3Y A;  1BT9 A;  4U9C A;  3FYX A;  3LK2 A;  3LK4 1;  5DIP A;  1GFO A;  1IZN A;  2FGQ X;  2Y2X A;  4Z3T A;  4LSH A;  4D64 A;  3D7I A;  3A2S X;  2OMF A;  1BH3 A;  4LSF A;  4JCH A;  4O4U A;  2Y0K A;  2ZLD A;  4FOZ A;  1HXT A;  2XE1 A;  3G7G A;  2KDY A;  3UAQ A;  5EE2 A;  3VY8 X;  3T20 A;  1ZHZ A;  4AUI A;  3UPG A;  1ORM A;  4KRA A;  4C69 X;  1G90 A;  2F1T A;  2X27 X;  4G76 A;  3NSG A;  1P4T A;  1QJ9 A;  3TZG A;  2J1N A;  4RLC A;  4RJX A;  5D5D A;  3AA6 B;  2M06 A;  4G9Q A;  3VY9 X;  1ME5 A;  4FZM A;  4FZL A;  1ZHX A;  2MNH A;  7PRN A;  3AA0 B;  2AF7 A;  4FMS A;  2N2L A;  4FSO A;  4JFB A;  4AZL A;  3GP6 A;  3C5O A;  1QJ8 A;  4B61 A;  1OPF A;  3AA1 A;  2LHF A;  2CWQ A;  3AA6 A;  4FES A;  4FUV A;  1PRN A;  3UU2 A;  1MM4 A;  2W80 C;  5GV0 A;  3AA0 A;  1Q9F A;  3POQ A;  3VZT X;  2KC0 A;  4E1S A;  4D65 A;  4AKM A;  3LK4 2;  2ES9 A;  2ERV A;  3SYS A;  2XE2 A;  4GF4 A;  2OUW A;  5T5F A;  3O0E A;  3AA7 A;  4AKR B;  3POX A;  3VZW X;  1LW1 A;  3SY7 A;  2XE5 A;  3JTY A;  3LK3 B;  4BUM X;  3DA3 A;  3AA1 B;  2M07 A;  4RJW A;  5DL6 A;  3SY9 A;  3VE2 A;  4FT6 A;  3K19 A;  3SZD A;  4AYD C;  1ZHY A;  3POR A;  3PRN A;  4KR8 A;  3BEY A;  1THQ A;  4LSE A;  2PFX A;  1GU9 A;  4AKR A;  4D5U A;  4O4X A;  1P8C A;  4XNK A;  2KXP B;  2PRR A;  1GFQ A;  2ODJ A;  5JDP A;  3LK3 A;  3PQU A;  4N58 A;  2PRN A;  4FRT A;  4FRX A;  5PRN A;  2Y7S A;  1HXX A;  3AA7 B;  4FSP A;  4AYN A;  2YPV A;  6PRN A;  1BXW A;  5ADX L;  3KVD D;  1PHO A;  2KXP A;  3QRC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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