2KXPA

Solution nmr structure of v-1 bound to capping protein (cp)
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
275
structure length
275
Chain Sequence
RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords F-actin-capping protein subunit alpha-1
publication title Solution NMR structure of V-1 bound to capping protein (CP)
rcsb
source organism Gallus gallus
molecule tags Protein binding
total genus 55
structure length 275
sequence length 275
ec nomenclature
pdb deposition date 2010-05-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 2kxpA01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 2kxpA02
3AA1A 3LK41 3AA6B 2KZ7A 3LK3A 3AA7B 5AFUL 3AAEB 1IZNB 5AFUK 2KXPB 4AKRB 3AAAA 3LK2A 3AA0B 3AA6A 3AAEA 3AA7A 3AA1B 2KZ7B 1IZNA 3LK3B 5ADXL 2KXPA 4AKRA 5ADXK 3LK2B 3AAAB 3AA0A 3LK42
chains in the Genus database with same CATH superfamily
3POUA 1Q9FA 4XNLA 1KNCA 2O4DA 2W80C 3DWOX 5G3AA 2F1TA 3AAAA 4KRAA 3SY9A 3UU2A 2XE3A 4N58A 4O49A 1Q9GA 3WU2O 4QQ1A 4RLCA 4G75A 2AF7A 4PUXA 4LSIA 2XG6A 3VY9X 4O4XA 5AFUL 3DZMA 2CWQA 4G76A 2OMFA 2KXPB 2R89A 2PRNA 3BEYA 5KAIO 4FOZA 5PRNA 4RLBA 2Y0LA 2KZ7B 3DA3A 1GFOA 4C4VB 5B5EO 4K3CA 2X27X 3EMNX 5T5FA 4N59A 5DIPA 3T20A 2WJRA 5TISO 4FESA 3BRZA 4FZLA 3BRYA 2KDYA 3DA4A 3GP6A 4E1SA 3AA1B 3SYSA 1BH3A 3O0EA 5ADXL 2ODJA 2LHFA 4KR4A 2F1VA 4GF4A 1G90A 1YS5A 4BUMX 5EE2A 2KC0A 7PRNA 3A0BO 1ZHYA 3PRNA 4AYNA 4AYID 3KVDD 1IZNA 3LK3B 1GFQA 4CTDA 1MPFA 5JDPA 3LVYA 3WI5A 3AA0A 3PORA 3V8UA 4GCSA 3AAEB 1HXTA 4RL9A 5G38A 3A0HO 2K0LA 4FSPA 2JN8A 2FGRA 3AA7A 3A2SX 2IWVA 4D65A 1H6S1 5DL6A 1MM5A 2FGQX 3HOLA 2IJCA 4AKRA 2XTRA 2R4OA 2Y0HA 4FSOA 3DWNA 3G7GA 3PF1A 4U9CA 1E54A 2R4NA 3JCUO 1GFPA 3VY8X 2J1NA 2MNHA 2WVPA 4FT6A 1HXXA 2PRRA 2LFUA 5G26A 4JCHA 2QTKA 5E79O 2XE5A 2M07A 4FQEA 3RBHA 1BXWA 3POXA 5G39A 1ZHWA 3D7IA 4FMSA 2ES9A 5B66O 4AUIA 5GV0A 2Y2XA 4KR8A 2XE1A 4JFBA 1ZHXA 4FZNA 2W81C 2JMMA 2JQYA 2KZ7A 5H2FO 3HOEA 3K19A 1VKEA 3VZUX 2GMYA 4D5UA 3UPGA 5D5DA 4GCQA 5DL8A 2X9KA 2R4LA 3AA1A 2R88A 4O3YA 1S5LO 2YNKA 3NJTA 2Q0TA 1GU9A 2O4VA 4AYMC 4LSEA 3AA6A 1ZHTA 2ERVA 4F4BA 2J4UP 5GTHO 2OUWA 3SY7A 3LK3A 2N2MA 1ORMA 5AFUK 1QJ8A 1QJ9A 3FYXA 3KZIO 3LK2A 4O3XB 3AA0B 4AZLA 3QRCA 3AAEA 3SZVA 4RJWA 3VZTX 3POQA 4GCPA 3PGSA 2F1CX 3VE1A 3AA7B 2M06A 4D64A 1T16A 2R4PA 4AKRB 5DIKA 5GTIO 1P8CA 3QRAA 3HW9A 2PORA 1T1LA 8PRNA 3C5OA 2ZFGA 4AKMA 3PQSA 5ADXK 3VZWX 3AAAB 3JTYA 3LK42 3C1LA 3BS0A 5KAFO 4O3ZA 5DL5A 2YPVA 2K4TA 1THQA 4XNKA 3SYBA 1GFNA 4IL6O 3TZGA 4RJXA 4AFKA 1PRNA 4C00A 1ZHZA 2MHLA 4O3WA 2KXPA 1LW1A 3LK41 1OSMA 4FRTA 3UAQA 3PGUA 1P4TA 4C4VA 6PRNA 2Y7SA 1GFMA 3HWBA 4LSHA 1OPFA 4N74A 2ZLDA 4C69X 5FVNA 2PFXA 3T0SA 1PHOA 3VE2A 4PR7A 2XMXA 4N75A 4AYDC 3T24A 1HXUA 2QEUA 4FZMA 2IWWA 5DL7A 4O4UA 2OYOA 4G9QA 4B61A 4UB6O 4UB8O 3AA6B 1ME5A 4LSFA 1IZNB 2WJQA 2XTQA 4K3BA 3SZDA 2XE2A 2GE4A 1QJPA 2N2LA 1MM4A 2Y0KA 3LK2B 4AYEC 3NSGA 4PJ0O 2R8AA 4Z3TA 3PQUA 4FRXA 5IYUA 4GHBA 4FUVA 3WI4A 1BT9A 3PGRA 4E1TA 2AXTO
chains in the Genus database with same CATH topology
3AA1A 3LK41 3PORA 3POUA 3V8UA 1OSMA 1Q9FA 4FRTA 4GCSA 4O3YA 3UAQA 3AAEB 1P4TA 1HXTA 4XNLA 1KNCA 2O4DA 2YNKA 2W80C 4RL9A 6PRNA 2Q0TA 2F1TA 1GU9A 3AAAA 2O4VA 4AYMC 5FVNA 2Y7SA 1GFMA 4KRAA 4LSEA 3AA6A 3HWBA 2K0LA 4LSHA 3SY9A 1ZHTA 2ERVA 2JN8A 2FGRA 3AA7A 4FSPA 3A2SX 1OPFA 4F4BA 2J4UP 2XE3A 4D65A 1H6S1 5DL6A 2ZLDA 1MM5A 2FGQX 4N58A 4C69X 2PFXA 3HOLA 2IJCA 4AKRA 2XTRA 2Y0HA 1PHOA 4FSOA 1Q9GA 4O49A 3T0SA 3VE2A 2OUWA 4QQ1A 4RLCA 4G75A 2AF7A 3SY7A 4PUXA 4LSIA 3G7GA 3LK3A 2N2MA 4U9CA 1E54A 2XG6A 2XMXA 4O4XA 3VY9X 5AFUL 3UPGA 1GFPA 3VY8X 1ORMA 5AFUK 2CWQA 1QJ8A 4G76A 2J1NA 2MNHA 1QJ9A 2OMFA 2KXPB 2PRNA 3FYXA 4AYDC 3BEYA 3LK2A 3T24A 1HXUA 2QEUA 4FOZA 4FT6A 4FZMA 4O3XB 3AA0B 4AZLA 3QRCA 5PRNA 4RLBA 3AAEA 2Y0LA 1HXXA 5DL7A 2KZ7B 2PRRA 3SZVA 2LFUA 3DA3A 4RJWA 4JCHA 4O4UA 5G26A 2QTKA 2OYOA 1GFOA 4G9QA 3VZTX 4B61A 2XE5A 2M07A 3POQA 4GCPA 2X27X 3RBHA 3VE1A 3AA6B 3EMNX 1ME5A 1BXWA 5T5FA 4D5UA 3AA7B 3POXA 2M06A 4N59A 4LSFA 1IZNB 5DIPA 1ZHWA 3T20A 3D7IA 4FESA 2XTQA 4D64A 4FZLA 4AKRB 5DIKA 4FMSA 3SZDA 2KDYA 2XE2A 2ES9A 3DA4A 1P8CA 3QRAA 3GP6A 4E1SA 3AA1B 3UU2A 3HW9A 2PORA 4AUIA 2Y2XA 5GV0A 3SYSA 4KR8A 2XE1A 1BH3A 2GE4A 3O0EA 4JFBA 1QJPA 8PRNA 2N2LA 1ZHXA 4FZNA 3C5OA 2W81C 5ADXL 2ZFGA 1MM4A 2Y0KA 4AKMA 2ODJA 3PQSA 5ADXK 3LK2B 3VZWX 2LHFA 3AAAB 4KR4A 3JTYA 3NSGA 4AYEC 3LK42 2JMMA 3C1LA 2KZ7A 2F1VA 4GF4A 4Z3TA 1G90A 3HOEA 3PQUA 4O3ZA 5DL5A 2YPVA 1YS5A 4FRXA 2K4TA 1THQA 4XNKA 3SYBA 5IYUA 3K19A 4GHBA 4FUVA 4BUMX 5EE2A 1GFNA 2KC0A 7PRNA 3TZGA 1ZHYA 4RJXA 4AFKA 1VKEA 3PRNA 1PRNA 2GMYA 1ZHZA 3VZUX 3KVDD 4GCQA 1IZNA 3LK3B 5D5DA 3WI4A 4AYID 4AYNA 1BT9A 1GFQA 2MHLA 4O3WA 2KXPA 5DL8A 1MPFA 4E1TA 5JDPA 3LVYA 3WI5A 3AA0A 1LW1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AA1 A;  3LK4 1;  3AA6 B;  2KZ7 A;  3LK3 A;  3AA7 B;  5AFU L;  3AAE B;  1IZN B;  5AFU K;  2KXP B;  4AKR B;  3AAA A;  3LK2 A;  3AA0 B;  3AA6 A;  3AAE A;  3AA7 A;  3AA1 B;  2KZ7 B;  1IZN A;  3LK3 B;  5ADX L;  2KXP A;  4AKR A;  5ADX K;  3LK2 B;  3AAA B;  3AA0 A;  3LK4 2; 
#chains in the Genus database with same CATH topology
 3POU A;  1Q9F A;  4XNL A;  1KNC A;  2O4D A;  2W80 C;  3DWO X;  5G3A A;  2F1T A;  3AAA A;  4KRA A;  3SY9 A;  3UU2 A;  2XE3 A;  4N58 A;  4O49 A;  1Q9G A;  3WU2 O;  4QQ1 A;  4RLC A;  4G75 A;  2AF7 A;  4PUX A;  4LSI A;  2XG6 A;  3VY9 X;  4O4X A;  5AFU L;  3DZM A;  2CWQ A;  4G76 A;  2OMF A;  2KXP B;  2R89 A;  2PRN A;  3BEY A;  5KAI O;  4FOZ A;  5PRN A;  4RLB A;  2Y0L A;  2KZ7 B;  3DA3 A;  1GFO A;  4C4V B;  5B5E O;  4K3C A;  2X27 X;  3EMN X;  5T5F A;  4N59 A;  5DIP A;  3T20 A;  2WJR A;  5TIS O;  4FES A;  3BRZ A;  4FZL A;  3BRY A;  2KDY A;  3DA4 A;  3GP6 A;  4E1S A;  3AA1 B;  3SYS A;  1BH3 A;  3O0E A;  5ADX L;  2ODJ A;  2LHF A;  4KR4 A;  2F1V A;  4GF4 A;  1G90 A;  1YS5 A;  4BUM X;  5EE2 A;  2KC0 A;  7PRN A;  3A0B O;  1ZHY A;  3PRN A;  4AYN A;  4AYI D;  3KVD D;  1IZN A;  3LK3 B;  1GFQ A;  4CTD A;  1MPF A;  5JDP A;  3LVY A;  3WI5 A;  3AA0 A;  3POR A;  3V8U A;  4GCS A;  3AAE B;  1HXT A;  4RL9 A;  5G38 A;  3A0H O;  2K0L A;  4FSP A;  2JN8 A;  2FGR A;  3AA7 A;  3A2S X;  2IWV A;  4D65 A;  1H6S 1;  5DL6 A;  1MM5 A;  2FGQ X;  3HOL A;  2IJC A;  4AKR A;  2XTR A;  2R4O A;  2Y0H A;  4FSO A;  3DWN A;  3G7G A;  3PF1 A;  4U9C A;  1E54 A;  2R4N A;  3JCU O;  1GFP A;  3VY8 X;  2J1N A;  2MNH A;  2WVP A;  4FT6 A;  1HXX A;  2PRR A;  2LFU A;  5G26 A;  4JCH A;  2QTK A;  5E79 O;  2XE5 A;  2M07 A;  4FQE A;  3RBH A;  1BXW A;  3POX A;  5G39 A;  1ZHW A;  3D7I A;  4FMS A;  2ES9 A;  5B66 O;  4AUI A;  5GV0 A;  2Y2X A;  4KR8 A;  2XE1 A;  4JFB A;  1ZHX A;  4FZN A;  2W81 C;  2JMM A;  2JQY A;  2KZ7 A;  5H2F O;  3HOE A;  3K19 A;  1VKE A;  3VZU X;  2GMY A;  4D5U A;  3UPG A;  5D5D A;  4GCQ A;  5DL8 A;  2X9K A;  2R4L A;  3AA1 A;  2R88 A;  4O3Y A;  1S5L O;  2YNK A;  3NJT A;  2Q0T A;  1GU9 A;  2O4V A;  4AYM C;  4LSE A;  3AA6 A;  1ZHT A;  2ERV A;  4F4B A;  2J4U P;  5GTH O;  2OUW A;  3SY7 A;  3LK3 A;  2N2M A;  1ORM A;  5AFU K;  1QJ8 A;  1QJ9 A;  3FYX A;  3KZI O;  3LK2 A;  4O3X B;  3AA0 B;  4AZL A;  3QRC A;  3AAE A;  3SZV A;  4RJW A;  3VZT X;  3POQ A;  4GCP A;  3PGS A;  2F1C X;  3VE1 A;  3AA7 B;  2M06 A;  4D64 A;  1T16 A;  2R4P A;  4AKR B;  5DIK A;  5GTI O;  1P8C A;  3QRA A;  3HW9 A;  2POR A;  1T1L A;  8PRN A;  3C5O A;  2ZFG A;  4AKM A;  3PQS A;  5ADX K;  3VZW X;  3AAA B;  3JTY A;  3LK4 2;  3C1L A;  3BS0 A;  5KAF O;  4O3Z A;  5DL5 A;  2YPV A;  2K4T A;  1THQ A;  4XNK A;  3SYB A;  1GFN A;  4IL6 O;  3TZG A;  4RJX A;  4AFK A;  1PRN A;  4C00 A;  1ZHZ A;  2MHL A;  4O3W A;  2KXP A;  1LW1 A;  3LK4 1;  1OSM A;  4FRT A;  3UAQ A;  3PGU A;  1P4T A;  4C4V A;  6PRN A;  2Y7S A;  1GFM A;  3HWB A;  4LSH A;  1OPF A;  4N74 A;  2ZLD A;  4C69 X;  5FVN A;  2PFX A;  3T0S A;  1PHO A;  3VE2 A;  4PR7 A;  2XMX A;  4N75 A;  4AYD C;  3T24 A;  1HXU A;  2QEU A;  4FZM A;  2IWW A;  5DL7 A;  4O4U A;  2OYO A;  4G9Q A;  4B61 A;  4UB6 O;  4UB8 O;  3AA6 B;  1ME5 A;  4LSF A;  1IZN B;  2WJQ A;  2XTQ A;  4K3B A;  3SZD A;  2XE2 A;  2GE4 A;  1QJP A;  2N2L A;  1MM4 A;  2Y0K A;  3LK2 B;  4AYE C;  3NSG A;  4PJ0 O;  2R8A A;  4Z3T A;  3PQU A;  4FRX A;  5IYU A;  4GHB A;  4FUV A;  3WI4 A;  1BT9 A;  3PGR A;  4E1T A;  2AXT O; 
#chains in the Genus database with same CATH homology
 3AA1 A;  3LK4 1;  3POR A;  3POU A;  3V8U A;  1OSM A;  1Q9F A;  4FRT A;  4GCS A;  4O3Y A;  3UAQ A;  3AAE B;  1P4T A;  1HXT A;  4XNL A;  1KNC A;  2O4D A;  2YNK A;  2W80 C;  4RL9 A;  6PRN A;  2Q0T A;  2F1T A;  1GU9 A;  3AAA A;  2O4V A;  4AYM C;  5FVN A;  2Y7S A;  1GFM A;  4KRA A;  4LSE A;  3AA6 A;  3HWB A;  2K0L A;  4LSH A;  3SY9 A;  1ZHT A;  2ERV A;  2JN8 A;  2FGR A;  3AA7 A;  4FSP A;  3A2S X;  1OPF A;  4F4B A;  2J4U P;  2XE3 A;  4D65 A;  1H6S 1;  5DL6 A;  2ZLD A;  1MM5 A;  2FGQ X;  4N58 A;  4C69 X;  2PFX A;  3HOL A;  2IJC A;  4AKR A;  2XTR A;  2Y0H A;  1PHO A;  4FSO A;  1Q9G A;  4O49 A;  3T0S A;  3VE2 A;  2OUW A;  4QQ1 A;  4RLC A;  4G75 A;  2AF7 A;  3SY7 A;  4PUX A;  4LSI A;  3G7G A;  3LK3 A;  2N2M A;  4U9C A;  1E54 A;  2XG6 A;  2XMX A;  4O4X A;  3VY9 X;  5AFU L;  3UPG A;  1GFP A;  3VY8 X;  1ORM A;  5AFU K;  2CWQ A;  1QJ8 A;  4G76 A;  2J1N A;  2MNH A;  1QJ9 A;  2OMF A;  2KXP B;  2PRN A;  3FYX A;  4AYD C;  3BEY A;  3LK2 A;  3T24 A;  1HXU A;  2QEU A;  4FOZ A;  4FT6 A;  4FZM A;  4O3X B;  3AA0 B;  4AZL A;  3QRC A;  5PRN A;  4RLB A;  3AAE A;  2Y0L A;  1HXX A;  5DL7 A;  2KZ7 B;  2PRR A;  3SZV A;  2LFU A;  3DA3 A;  4RJW A;  4JCH A;  4O4U A;  5G26 A;  2QTK A;  2OYO A;  1GFO A;  4G9Q A;  3VZT X;  4B61 A;  2XE5 A;  2M07 A;  3POQ A;  4GCP A;  2X27 X;  3RBH A;  3VE1 A;  3AA6 B;  3EMN X;  1ME5 A;  1BXW A;  5T5F A;  4D5U A;  3AA7 B;  3POX A;  2M06 A;  4N59 A;  4LSF A;  1IZN B;  5DIP A;  1ZHW A;  3T20 A;  3D7I A;  4FES A;  2XTQ A;  4D64 A;  4FZL A;  4AKR B;  5DIK A;  4FMS A;  3SZD A;  2KDY A;  2XE2 A;  2ES9 A;  3DA4 A;  1P8C A;  3QRA A;  3GP6 A;  4E1S A;  3AA1 B;  3UU2 A;  3HW9 A;  2POR A;  4AUI A;  2Y2X A;  5GV0 A;  3SYS A;  4KR8 A;  2XE1 A;  1BH3 A;  2GE4 A;  3O0E A;  4JFB A;  1QJP A;  8PRN A;  2N2L A;  1ZHX A;  4FZN A;  3C5O A;  2W81 C;  5ADX L;  2ZFG A;  1MM4 A;  2Y0K A;  4AKM A;  2ODJ A;  3PQS A;  5ADX K;  3LK2 B;  3VZW X;  2LHF A;  3AAA B;  4KR4 A;  3JTY A;  3NSG A;  4AYE C;  3LK4 2;  2JMM A;  3C1L A;  2KZ7 A;  2F1V A;  4GF4 A;  4Z3T A;  1G90 A;  3HOE A;  3PQU A;  4O3Z A;  5DL5 A;  2YPV A;  1YS5 A;  4FRX A;  2K4T A;  1THQ A;  4XNK A;  3SYB A;  5IYU A;  3K19 A;  4GHB A;  4FUV A;  4BUM X;  5EE2 A;  1GFN A;  2KC0 A;  7PRN A;  3TZG A;  1ZHY A;  4RJX A;  4AFK A;  1VKE A;  3PRN A;  1PRN A;  2GMY A;  1ZHZ A;  3VZU X;  3KVD D;  4GCQ A;  1IZN A;  3LK3 B;  5D5D A;  3WI4 A;  4AYI D;  4AYN A;  1BT9 A;  1GFQ A;  2MHL A;  4O3W A;  2KXP A;  5DL8 A;  1MPF A;  4E1T A;  5JDP A;  3LVY A;  3WI5 A;  3AA0 A;  1LW1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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