2KXPA

Solution nmr structure of v-1 bound to capping protein (cp)
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
275
structure length
275
Chain Sequence
RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords F-actin-capping protein subunit alpha-1
publication title Solution NMR structure of V-1 bound to capping protein (CP)
rcsb
source organism Gallus gallus
total genus 55
structure length 275
sequence length 275
ec nomenclature
pdb deposition date 2010-05-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 2kxpA01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 2kxpA02
3AAAA 2KXPA 4AKRA 3AA6B 5AFUK 3AA6A 3LK3B 5AFUL 3AA7B 3LK3A 2KZ7B 3AA7A 1IZNB 2KZ7A 5ADXK 1IZNA 3LK41 3AA1B 3AAEB 3LK42 3AA1A 3AAEA 5ADXL 3AA0B 3LK2B 3AA0A 3LK2A 2KXPB 3AAAB 4AKRB
chains in the Genus database with same CATH superfamily
1ZHXA 2KDYA 2WJQA 5DIPA 4G75A 3FYXA 5GTIO 3QRCA 1MM4A 1GFOA 2R4LA 4QQ1A 2R89A 4BUMX 4O49A 1IZNB 2OMFA 2KZ7A 4N74A 1PRNA 2GMYA 1QJ8A 4FESA 2F1CX 4PUXA 4C69X 1VKEA 4GF4A 3SY7A 4FT6A 2YNKA 4IL6O 3A0HO 3DZMA 4GCQA 8PRNA 4KR8A 4O3YA 2YPVA 5GTHO 2MHLA 4KR4A 3K19A 1BXWA 3SY9A 3LVYA 1GFQA 3VY9X 1PHOA 2X27X 1YS5A 4FQEA 3PF1A 3LK2B 1HXXA 4AKMA 3VZWX 2ZLDA 4PJ0O 1ZHZA 4XNKA 4E1TA 2LHFA 3LK3B 1ZHYA 4UB6O 3C1LA 5DL7A 3T0SA 2JQYA 5H2FO 3BRZA 4CTDA 3AA0B 3HOEA 4FUVA 2XE2A 3G7GA 2PRRA 2KXPA 3DA4A 1H6S1 4K3CA 3JTYA 2QEUA 2LFUA 4LSEA 2R8AA 1GFMA 5G38A 6PRNA 4O3ZA 5FVNA 3A2SX 5E79O 5KAIO 3AA1A 3TZGA 4O3XB 1THQA 5TISO 4FOZA 3PRNA 2FGQX 5DL8A 4Z3TA 4AZLA 2XE5A 1OPFA 4C00A 3DWNA 1Q9GA 1BT9A 1IZNA 1KNCA 4AYID 2XMXA 2GE4A 3UU2A 3BRYA 3BEYA 4FZLA 4FZMA 2W81C 3VE1A 2KC0A 3D7IA 5KAFO 4GHBA 4RLBA 3V8UA 3POXA 5DL5A 4AYEC 5T5FA 5ADXK 1QJ9A 2Y2XA 5ADXL 3PQSA 1ZHWA 3WI4A 4D5UA 3VZTX 1MM5A 2IJCA 3A0BO 2Y7SA 5B5EO 2J4UP 3POQA 4K3BA 5AFUL 5DIKA 2IWVA 2AXTO 2Q0TA 2WVPA 4UB8O 2W80C 4AYDC 3KZIO 3LK2A 3AAAB 3VE2A 4AKRB 5G3AA 2ERVA 4AYMC 4FRXA 2MNHA 2XE3A 4N58A 4C4VB 4FMSA 2R4OA 3HWBA 4FSPA 3AA7B 3LK3A 3UAQA 2Y0LA 5JDPA 2CWQA 2PRNA 3KVDD 5PRNA 2JN8A 5IYUA 4FSOA 2O4VA 3AA0A 2R4NA 4D64A 3SZVA 4RL9A 4KRAA 3BS0A 3C5OA 3AA6B 3WI5A 1P8CA 2M06A 1HXTA 1T1LA 5EE2A 5DL6A 4JFBA 1GFNA 4G9QA 3O0EA 2Y0KA 2R88A 3HW9A 2XE1A 2F1TA 3NJTA 1GFPA 3AAEB 5G26A 2N2LA 1ZHTA 3POUA 4RJXA 4FRTA 4U9CA 4XNLA 2XG6A 5G39A 3EMNX 4D65A 2KZ7B 4B61A 5B66O 2K4TA 1HXUA 4GCPA 2XTQA 4E1SA 3QRAA 3RBHA 4PR7A 2OYOA 3VZUX 2O4DA 5AFUK 5GV0A 3PORA 4GCSA 4N75A 5D5DA 4O4XA 3SZDA 2JMMA 3DWOX 4O4UA 1ME5A 1QJPA 2QTKA 3SYSA 1MPFA 3AAAA 3T20A 4AKRA 3HOLA 4C4VA 2M07A 2J1NA 2PFXA 2X9KA 4AUIA 3NSGA 3AA7A 2K0LA 1GU9A 3LK41 2IWWA 4LSFA 2ODJA 2Y0HA 7PRNA 1ORMA 3JCUO 3PGUA 4LSIA 1G90A 2R4PA 1T16A 2AF7A 1OSMA 2WJRA 3AA6A 3VY8X 3UPGA 4G76A 3GP6A 2ZFGA 4FZNA 2ES9A 2FGRA 2XTRA 1E54A 2OUWA 1BH3A 3DA3A 3WU2O 2PORA 4F4BA 2KXPB 4O3WA 1S5LO 3PGSA 3SYBA 2F1VA 1LW1A 3PQUA 4LSHA 3T24A 1Q9FA 4RJWA 4AFKA 1P4TA 4N59A 3AA1B 2N2MA 3LK42 4RLCA 3AAEA 4AYNA 3PGRA 4JCHA
chains in the Genus database with same CATH topology
1ZHXA 2KXPA 2ERVA 4AYMC 2KDYA 4FRXA 5DIPA 4G75A 3FYXA 2MNHA 2XE3A 2OYOA 4N58A 3VZUX 3DA4A 3QRCA 1H6S1 3JTYA 4FMSA 2QEUA 2O4DA 2LFUA 5AFUK 1MM4A 3HWBA 1GFOA 4LSEA 3PORA 5GV0A 4QQ1A 4FSPA 4GCSA 3AA7B 3LK3A 3UAQA 4BUMX 1GFMA 2Y0LA 5JDPA 2CWQA 2PRNA 1IZNB 4O49A 2OMFA 6PRNA 2KZ7A 4O3ZA 5D5DA 1PRNA 3KVDD 2GMYA 1QJ8A 4O4XA 3A2SX 4FESA 5FVNA 5PRNA 3SZDA 4PUXA 3AA1A 2JMMA 3TZGA 2JN8A 1ME5A 1QJPA 4O4UA 2QTKA 4C69X 4O3XB 5IYUA 3SYSA 1THQA 4FOZA 1VKEA 3AA0A 2O4VA 1MPFA 4FSOA 4GF4A 4F4BA 3PRNA 4D64A 3SZVA 4RL9A 2FGQX 3AAAA 4KRAA 3SY7A 3T20A 4AKRA 5DL8A 3C5OA 3HOLA 3AA6B 3WI5A 4Z3TA 4AZLA 2XE5A 1P8CA 2M06A 2M07A 1HXTA 4FT6A 2YNKA 2J1NA 1OPFA 2PFXA 4GCQA 8PRNA 4AUIA 3NSGA 3AA7A 1Q9GA 1BT9A 1GU9A 1IZNA 3LK41 2K0LA 4KR8A 1KNCA 5EE2A 5DL6A 4JFBA 1GFNA 4AYID 4O3YA 2YPVA 2XMXA 2GE4A 2MHLA 4LSFA 2ODJA 4KR4A 3K19A 4G9QA 2Y0HA 3UU2A 1ORMA 7PRNA 1BXWA 4LSIA 3BEYA 3SY9A 4FZLA 1G90A 4FZMA 3O0EA 2AF7A 3LVYA 1OSMA 2W81C 3VE1A 1GFQA 2KC0A 3AA6A 3D7IA 3VY8X 3UPGA 4GHBA 4RLBA 3V8UA 2Y0KA 3GP6A 4G76A 3VY9X 2ZFGA 3POXA 5DL5A 1PHOA 3HW9A 4FZNA 2X27X 4AYEC 2XE1A 2ES9A 2F1TA 5T5FA 1YS5A 5ADXK 1QJ9A 2FGRA 2XTRA 1E54A 1GFPA 3AAEB 5G26A 2OUWA 2N2LA 2Y2XA 1BH3A 3DA3A 5ADXL 3LK2B 1ZHTA 3PQSA 1ZHWA 1HXXA 2PORA 3POUA 4RJXA 2KXPB 3VZWX 2ZLDA 4O3WA 3WI4A 4AKMA 1ZHZA 3VZTX 4FRTA 4D5UA 1MM5A 2F1VA 1LW1A 3PQUA 4U9CA 2IJCA 4XNKA 3SYBA 4XNLA 4E1TA 2Y7SA 2XG6A 4LSHA 2LHFA 2J4UP 3T24A 1Q9FA 4RJWA 3LK3B 4AFKA 3EMNX 1ZHYA 4D65A 3POQA 1P4TA 5AFUL 3C1LA 2KZ7B 5DL7A 4AKRB 5DIKA 4N59A 3T0SA 4B61A 2K4TA 3AA1B 1HXUA 2N2MA 3LK42 4GCPA 4RLCA 3AAEA 2Q0TA 2XTQA 4AYNA 3AA0B 2W80C 3HOEA 4FUVA 4AYDC 2XE2A 4JCHA 3G7GA 4E1SA 3QRAA 3RBHA 3LK2A 3AAAB 3VE2A 2PRRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AAA A;  2KXP A;  4AKR A;  3AA6 B;  5AFU K;  3AA6 A;  3LK3 B;  5AFU L;  3AA7 B;  3LK3 A;  2KZ7 B;  3AA7 A;  1IZN B;  2KZ7 A;  5ADX K;  1IZN A;  3LK4 1;  3AA1 B;  3AAE B;  3LK4 2;  3AA1 A;  3AAE A;  5ADX L;  3AA0 B;  3LK2 B;  3AA0 A;  3LK2 A;  2KXP B;  3AAA B;  4AKR B; 
#chains in the Genus database with same CATH topology
 1ZHX A;  2KDY A;  2WJQ A;  5DIP A;  4G75 A;  3FYX A;  5GTI O;  3QRC A;  1MM4 A;  1GFO A;  2R4L A;  4QQ1 A;  2R89 A;  4BUM X;  4O49 A;  1IZN B;  2OMF A;  2KZ7 A;  4N74 A;  1PRN A;  2GMY A;  1QJ8 A;  4FES A;  2F1C X;  4PUX A;  4C69 X;  1VKE A;  4GF4 A;  3SY7 A;  4FT6 A;  2YNK A;  4IL6 O;  3A0H O;  3DZM A;  4GCQ A;  8PRN A;  4KR8 A;  4O3Y A;  2YPV A;  5GTH O;  2MHL A;  4KR4 A;  3K19 A;  1BXW A;  3SY9 A;  3LVY A;  1GFQ A;  3VY9 X;  1PHO A;  2X27 X;  1YS5 A;  4FQE A;  3PF1 A;  3LK2 B;  1HXX A;  4AKM A;  3VZW X;  2ZLD A;  4PJ0 O;  1ZHZ A;  4XNK A;  4E1T A;  2LHF A;  3LK3 B;  1ZHY A;  4UB6 O;  3C1L A;  5DL7 A;  3T0S A;  2JQY A;  5H2F O;  3BRZ A;  4CTD A;  3AA0 B;  3HOE A;  4FUV A;  2XE2 A;  3G7G A;  2PRR A;  2KXP A;  3DA4 A;  1H6S 1;  4K3C A;  3JTY A;  2QEU A;  2LFU A;  4LSE A;  2R8A A;  1GFM A;  5G38 A;  6PRN A;  4O3Z A;  5FVN A;  3A2S X;  5E79 O;  5KAI O;  3AA1 A;  3TZG A;  4O3X B;  1THQ A;  5TIS O;  4FOZ A;  3PRN A;  2FGQ X;  5DL8 A;  4Z3T A;  4AZL A;  2XE5 A;  1OPF A;  4C00 A;  3DWN A;  1Q9G A;  1BT9 A;  1IZN A;  1KNC A;  4AYI D;  2XMX A;  2GE4 A;  3UU2 A;  3BRY A;  3BEY A;  4FZL A;  4FZM A;  2W81 C;  3VE1 A;  2KC0 A;  3D7I A;  5KAF O;  4GHB A;  4RLB A;  3V8U A;  3POX A;  5DL5 A;  4AYE C;  5T5F A;  5ADX K;  1QJ9 A;  2Y2X A;  5ADX L;  3PQS A;  1ZHW A;  3WI4 A;  4D5U A;  3VZT X;  1MM5 A;  2IJC A;  3A0B O;  2Y7S A;  5B5E O;  2J4U P;  3POQ A;  4K3B A;  5AFU L;  5DIK A;  2IWV A;  2AXT O;  2Q0T A;  2WVP A;  4UB8 O;  2W80 C;  4AYD C;  3KZI O;  3LK2 A;  3AAA B;  3VE2 A;  4AKR B;  5G3A A;  2ERV A;  4AYM C;  4FRX A;  2MNH A;  2XE3 A;  4N58 A;  4C4V B;  4FMS A;  2R4O A;  3HWB A;  4FSP A;  3AA7 B;  3LK3 A;  3UAQ A;  2Y0L A;  5JDP A;  2CWQ A;  2PRN A;  3KVD D;  5PRN A;  2JN8 A;  5IYU A;  4FSO A;  2O4V A;  3AA0 A;  2R4N A;  4D64 A;  3SZV A;  4RL9 A;  4KRA A;  3BS0 A;  3C5O A;  3AA6 B;  3WI5 A;  1P8C A;  2M06 A;  1HXT A;  1T1L A;  5EE2 A;  5DL6 A;  4JFB A;  1GFN A;  4G9Q A;  3O0E A;  2Y0K A;  2R88 A;  3HW9 A;  2XE1 A;  2F1T A;  3NJT A;  1GFP A;  3AAE B;  5G26 A;  2N2L A;  1ZHT A;  3POU A;  4RJX A;  4FRT A;  4U9C A;  4XNL A;  2XG6 A;  5G39 A;  3EMN X;  4D65 A;  2KZ7 B;  4B61 A;  5B66 O;  2K4T A;  1HXU A;  4GCP A;  2XTQ A;  4E1S A;  3QRA A;  3RBH A;  4PR7 A;  2OYO A;  3VZU X;  2O4D A;  5AFU K;  5GV0 A;  3POR A;  4GCS A;  4N75 A;  5D5D A;  4O4X A;  3SZD A;  2JMM A;  3DWO X;  4O4U A;  1ME5 A;  1QJP A;  2QTK A;  3SYS A;  1MPF A;  3AAA A;  3T20 A;  4AKR A;  3HOL A;  4C4V A;  2M07 A;  2J1N A;  2PFX A;  2X9K A;  4AUI A;  3NSG A;  3AA7 A;  2K0L A;  1GU9 A;  3LK4 1;  2IWW A;  4LSF A;  2ODJ A;  2Y0H A;  7PRN A;  1ORM A;  3JCU O;  3PGU A;  4LSI A;  1G90 A;  2R4P A;  1T16 A;  2AF7 A;  1OSM A;  2WJR A;  3AA6 A;  3VY8 X;  3UPG A;  4G76 A;  3GP6 A;  2ZFG A;  4FZN A;  2ES9 A;  2FGR A;  2XTR A;  1E54 A;  2OUW A;  1BH3 A;  3DA3 A;  3WU2 O;  2POR A;  4F4B A;  2KXP B;  4O3W A;  1S5L O;  3PGS A;  3SYB A;  2F1V A;  1LW1 A;  3PQU A;  4LSH A;  3T24 A;  1Q9F A;  4RJW A;  4AFK A;  1P4T A;  4N59 A;  3AA1 B;  2N2M A;  3LK4 2;  4RLC A;  3AAE A;  4AYN A;  3PGR A;  4JCH A; 
#chains in the Genus database with same CATH homology
 1ZHX A;  2KXP A;  2ERV A;  4AYM C;  2KDY A;  4FRX A;  5DIP A;  4G75 A;  3FYX A;  2MNH A;  2XE3 A;  2OYO A;  4N58 A;  3VZU X;  3DA4 A;  3QRC A;  1H6S 1;  3JTY A;  4FMS A;  2QEU A;  2O4D A;  2LFU A;  5AFU K;  1MM4 A;  3HWB A;  1GFO A;  4LSE A;  3POR A;  5GV0 A;  4QQ1 A;  4FSP A;  4GCS A;  3AA7 B;  3LK3 A;  3UAQ A;  4BUM X;  1GFM A;  2Y0L A;  5JDP A;  2CWQ A;  2PRN A;  1IZN B;  4O49 A;  2OMF A;  6PRN A;  2KZ7 A;  4O3Z A;  5D5D A;  1PRN A;  3KVD D;  2GMY A;  1QJ8 A;  4O4X A;  3A2S X;  4FES A;  5FVN A;  5PRN A;  3SZD A;  4PUX A;  3AA1 A;  2JMM A;  3TZG A;  2JN8 A;  1ME5 A;  1QJP A;  4O4U A;  2QTK A;  4C69 X;  4O3X B;  5IYU A;  3SYS A;  1THQ A;  4FOZ A;  1VKE A;  3AA0 A;  2O4V A;  1MPF A;  4FSO A;  4GF4 A;  4F4B A;  3PRN A;  4D64 A;  3SZV A;  4RL9 A;  2FGQ X;  3AAA A;  4KRA A;  3SY7 A;  3T20 A;  4AKR A;  5DL8 A;  3C5O A;  3HOL A;  3AA6 B;  3WI5 A;  4Z3T A;  4AZL A;  2XE5 A;  1P8C A;  2M06 A;  2M07 A;  1HXT A;  4FT6 A;  2YNK A;  2J1N A;  1OPF A;  2PFX A;  4GCQ A;  8PRN A;  4AUI A;  3NSG A;  3AA7 A;  1Q9G A;  1BT9 A;  1GU9 A;  1IZN A;  3LK4 1;  2K0L A;  4KR8 A;  1KNC A;  5EE2 A;  5DL6 A;  4JFB A;  1GFN A;  4AYI D;  4O3Y A;  2YPV A;  2XMX A;  2GE4 A;  2MHL A;  4LSF A;  2ODJ A;  4KR4 A;  3K19 A;  4G9Q A;  2Y0H A;  3UU2 A;  1ORM A;  7PRN A;  1BXW A;  4LSI A;  3BEY A;  3SY9 A;  4FZL A;  1G90 A;  4FZM A;  3O0E A;  2AF7 A;  3LVY A;  1OSM A;  2W81 C;  3VE1 A;  1GFQ A;  2KC0 A;  3AA6 A;  3D7I A;  3VY8 X;  3UPG A;  4GHB A;  4RLB A;  3V8U A;  2Y0K A;  3GP6 A;  4G76 A;  3VY9 X;  2ZFG A;  3POX A;  5DL5 A;  1PHO A;  3HW9 A;  4FZN A;  2X27 X;  4AYE C;  2XE1 A;  2ES9 A;  2F1T A;  5T5F A;  1YS5 A;  5ADX K;  1QJ9 A;  2FGR A;  2XTR A;  1E54 A;  1GFP A;  3AAE B;  5G26 A;  2OUW A;  2N2L A;  2Y2X A;  1BH3 A;  3DA3 A;  5ADX L;  3LK2 B;  1ZHT A;  3PQS A;  1ZHW A;  1HXX A;  2POR A;  3POU A;  4RJX A;  2KXP B;  3VZW X;  2ZLD A;  4O3W A;  3WI4 A;  4AKM A;  1ZHZ A;  3VZT X;  4FRT A;  4D5U A;  1MM5 A;  2F1V A;  1LW1 A;  3PQU A;  4U9C A;  2IJC A;  4XNK A;  3SYB A;  4XNL A;  4E1T A;  2Y7S A;  2XG6 A;  4LSH A;  2LHF A;  2J4U P;  3T24 A;  1Q9F A;  4RJW A;  3LK3 B;  4AFK A;  3EMN X;  1ZHY A;  4D65 A;  3POQ A;  1P4T A;  5AFU L;  3C1L A;  2KZ7 B;  5DL7 A;  4AKR B;  5DIK A;  4N59 A;  3T0S A;  4B61 A;  2K4T A;  3AA1 B;  1HXU A;  2N2M A;  3LK4 2;  4GCP A;  4RLC A;  3AAE A;  2Q0T A;  2XTQ A;  4AYN A;  3AA0 B;  2W80 C;  3HOE A;  4FUV A;  4AYD C;  2XE2 A;  4JCH A;  3G7G A;  4E1S A;  3QRA A;  3RBH A;  3LK2 A;  3AAA B;  3VE2 A;  2PRR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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