2KY4A

Solution nmr structure of the pbs linker domain of phycobilisome linker polypeptide from anabaena sp. northeast structural genomics consortium target nsr123e
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
149
structure length
149
Chain Sequence
MKVFKRVAGIKDKAAIKTLISAAYRQIFERDIAPYIAQNEFSGWESKLGNGEITVKEFIEGLGYSNLYLKEFYTPYPNTKVIELGTKHFLGRAPIDQAEIRKYNQILATQGIRAFINALVNSQEYNEVFGEDTVPYRRFPTLEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Photosynthesis
molecule keywords Phycobilisome linker polypeptide
publication title Solution NMR structure of the PBS linker domain of phycobilisome linker polypeptide from Anabaena sp. Northeast Structural Genomics Consortium Target NsR123E
rcsb
source organism Nostoc sp.
total genus 42
structure length 149
sequence length 149
ec nomenclature
pdb deposition date 2010-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00427 PBS_linker_poly Phycobilisome Linker polypeptide
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3130.20 Mainly Alpha Orthogonal Bundle serine acetyltransferase, domain 1 serine acetyltransferase, domain 1 2ky4A01
2KY4A 2L8VA 3OHWA 3PRUA 2L06A 3OSJA 2L3WA 3NPHB
chains in the Genus database with same CATH superfamily
2L8VA 3GVDA 3Q1XA 1SSMA 3P47A 4N69A 4HZCA 4HZDA 3NPHB 1SSQA 4N6BA 1SSTA 3MC4A 3P1BA 3OSJA 3F1XA 3OHWA 2L3WA 2KY4A 1S80A 1T3DA 4N6AA 4H7OA 3PRUA 2L06A
chains in the Genus database with same CATH topology
2L8VA 3GVDA 3Q1XA 1SSMA 3P47A 4N69A 4HZCA 4HZDA 3NPHB 1SSQA 4N6BA 1SSTA 3MC4A 3P1BA 3OSJA 3F1XA 3OHWA 2L3WA 2KY4A 1S80A 1T3DA 4N6AA 4H7OA 3PRUA 2L06A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KY4 A;  2L8V A;  3OHW A;  3PRU A;  2L06 A;  3OSJ A;  2L3W A;  3NPH B; 
#chains in the Genus database with same CATH topology
 2L8V A;  3GVD A;  3Q1X A;  1SSM A;  3P47 A;  4N69 A;  4HZC A;  4HZD A;  3NPH B;  1SSQ A;  4N6B A;  1SST A;  3MC4 A;  3P1B A;  3OSJ A;  3F1X A;  3OHW A;  2L3W A;  2KY4 A;  1S80 A;  1T3D A;  4N6A A;  4H7O A;  3PRU A;  2L06 A; 
#chains in the Genus database with same CATH homology
 2L8V A;  3GVD A;  3Q1X A;  1SSM A;  3P47 A;  4N69 A;  4HZC A;  4HZD A;  3NPH B;  1SSQ A;  4N6B A;  1SST A;  3MC4 A;  3P1B A;  3OSJ A;  3F1X A;  3OHW A;  2L3W A;  2KY4 A;  1S80 A;  1T3D A;  4N6A A;  4H7O A;  3PRU A;  2L06 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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