2KY4A

Solution nmr structure of the pbs linker domain of phycobilisome linker polypeptide from anabaena sp. northeast structural genomics consortium target nsr123e
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
149
structure length
149
Chain Sequence
MKVFKRVAGIKDKAAIKTLISAAYRQIFERDIAPYIAQNEFSGWESKLGNGEITVKEFIEGLGYSNLYLKEFYTPYPNTKVIELGTKHFLGRAPIDQAEIRKYNQILATQGIRAFINALVNSQEYNEVFGEDTVPYRRFPTLEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Phycobilisome linker polypeptide
publication title Solution NMR structure of the PBS linker domain of phycobilisome linker polypeptide from Anabaena sp. Northeast Structural Genomics Consortium Target NsR123E
rcsb
source organism Nostoc sp.
molecule tags Photosynthesis
total genus 42
structure length 149
sequence length 149
ec nomenclature
pdb deposition date 2010-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00427 PBS_linker_poly Phycobilisome Linker polypeptide
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3130.20 Mainly Alpha Orthogonal Bundle serine acetyltransferase, domain 1 serine acetyltransferase, domain 1 2ky4A01
3OSJA 3NPHB 2KY4A 3PRUA 2L3WA 2L06A 2L8VA 3OHWA
chains in the Genus database with same CATH superfamily
3GVDA 3P1BA 3OSJA 1S80A 1SSMA 4HZCA 3PRUA 2L3WA 2L8VA 3OHWA 1SSTA 1T3DA 4H7OA 3Q1XA 4N6BA 3P47A 4HZDA 2L06A 3F1XA 3MC4A 2KY4A 3NPHB 1SSQA 4N6AA 4N69A
chains in the Genus database with same CATH topology
3GVDA 3P1BA 3OSJA 1S80A 1SSMA 4HZCA 3PRUA 2L3WA 2L8VA 3OHWA 1SSTA 1T3DA 4H7OA 3Q1XA 4N6BA 3P47A 4HZDA 2L06A 3F1XA 3MC4A 2KY4A 3NPHB 1SSQA 4N6AA 4N69A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OSJ A;  3NPH B;  2KY4 A;  3PRU A;  2L3W A;  2L06 A;  2L8V A;  3OHW A; 
#chains in the Genus database with same CATH topology
 3GVD A;  3P1B A;  3OSJ A;  1S80 A;  1SSM A;  4HZC A;  3PRU A;  2L3W A;  2L8V A;  3OHW A;  1SST A;  1T3D A;  4H7O A;  3Q1X A;  4N6B A;  3P47 A;  4HZD A;  2L06 A;  3F1X A;  3MC4 A;  2KY4 A;  3NPH B;  1SSQ A;  4N6A A;  4N69 A; 
#chains in the Genus database with same CATH homology
 3GVD A;  3P1B A;  3OSJ A;  1S80 A;  1SSM A;  4HZC A;  3PRU A;  2L3W A;  2L8V A;  3OHW A;  1SST A;  1T3D A;  4H7O A;  3Q1X A;  4N6B A;  3P47 A;  4HZD A;  2L06 A;  3F1X A;  3MC4 A;  2KY4 A;  3NPH B;  1SSQ A;  4N6A A;  4N69 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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