2KYYA

Solution nmr structure of the n-terminal domain of putative atp-dependent dna helicase recg-related protein from nitrosomonas europaea, northeast structural genomics consortium target ner70a
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
153
structure length
153
Chain Sequence
MRSATDLLDELNAVDESARIEAKRASDMGKSVMETVIAFANEPGLDGGYLLLGVDWAINDKGDTVYRPVGLPDPDKVQRDLASQCASMLNVALRPEMQLEQVGGKTLLVVYVPEADVTHKPIYKKATGLPGGAYRRIGSSDQRCVLEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Possible ATP-dependent DNA helicase RecG-related protein
publication title Solution NMR Structure of the N-terminal Domain of Putative ATP-dependent DNA Helicase RecG-related Protein from Nitrosomonas europaea
rcsb
source organism Nitrosomonas europaea
total genus 27
structure length 153
sequence length 153
ec nomenclature
pdb deposition date 2010-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04326 AlbA_2 Putative DNA-binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.30 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2kyyA00
2KYYA 3LMMA
chains in the Genus database with same CATH superfamily
2EMRA 1WDEA 2E17A 2E8HA 2PCAA 2ED3A 2EK7A 2EKAA 2EEQA 2EJKA 2OWKA 2DXWA 1WYZA 2E0NA 2QBUA 1V9AA 2E8SA 3FFYA 2EH4A 2E7RA 2KYYA 2EK2A 2DV4A 2ELDA 2EJZA 2EGSA 2CBFA 2PCGA 2DV3A 2EL2A 1VCEA 2DXVA 1CBFA 3NUTA 1PJTA 2HR8A 2HUXA 2PCMA 2EN5A 2PCKA 1VA0A 2PB6A 2PCIA 2P6LA 1S4DA 1VE2A 5HW4A 2NPNA 2P5FA 2ENIA 2P6IA 2P5CA 2E8QA 3LMMA 2YBOA 2DSGA 2DV5A 2EL3A 2OWVA 2EJJA 2EHLA 1PJSA 2BB3A 3ND1A 2E8RA 2EK3A 3NDCA 2E4RA 2P6KA 2EMUA 2E16A 2PCHA 2Z6RA 1VHVA 2EGLA 2ZVBA 2EK4A 2ELEA 2DSHA 2ED5A 2DSIA 4E16A 2DV7A 2E08A 2DEKA 2EL0A 2PB4A 3I4TA 2OWUA 2DXXA 2ZVCA 2EL1A 2OWGA 2EH2A 2EH5A 2PB5A 2HUQA 2EHCA 2E15A 2E4NA 2P6DA 3KWPA 2YBQA 2P2XA 2E0KA 2P9DA 1WNGA 3FQ6A 2HUTA 2EGBA 2HUVA 3NEIA 2OWFA 1PJQA 2E07A
chains in the Genus database with same CATH topology
2EMRA 1WDEA 2E17A 2E8HA 2PCAA 2ED3A 2EK7A 2EKAA 2EEQA 2EJKA 2OWKA 2DXWA 1WYZA 2E0NA 2QBUA 1V9AA 2E8SA 3FFYA 2EH4A 2E7RA 2KYYA 2EK2A 2DV4A 2ELDA 2EJZA 2EGSA 2CBFA 2PCGA 2DV3A 2EL2A 1VCEA 2DXVA 1CBFA 3NUTA 1PJTA 2HR8A 2HUXA 2PCMA 2EN5A 2PCKA 1VA0A 2PB6A 2PCIA 2P6LA 1S4DA 1VE2A 5HW4A 2NPNA 2P5FA 2ENIA 2P6IA 2P5CA 2E8QA 3LMMA 2YBOA 2DSGA 2DV5A 2EL3A 2OWVA 2EJJA 2EHLA 1PJSA 2BB3A 3ND1A 2E8RA 2EK3A 3NDCA 2E4RA 2P6KA 2EMUA 2E16A 2PCHA 2Z6RA 1VHVA 2EGLA 2ZVBA 2EK4A 2ELEA 2DSHA 2ED5A 2DSIA 4E16A 2DV7A 2E08A 2DEKA 2EL0A 2PB4A 3I4TA 2OWUA 2DXXA 2ZVCA 2EL1A 2OWGA 2EH2A 2EH5A 2PB5A 2HUQA 2EHCA 2E15A 2E4NA 2P6DA 3KWPA 2YBQA 2P2XA 2E0KA 2P9DA 1WNGA 3FQ6A 2HUTA 2EGBA 2HUVA 3NEIA 2OWFA 1PJQA 2E07A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KYY A;  3LMM A; 
#chains in the Genus database with same CATH topology
 2EMR A;  1WDE A;  2E17 A;  2E8H A;  2PCA A;  2ED3 A;  2EK7 A;  2EKA A;  2EEQ A;  2EJK A;  2OWK A;  2DXW A;  1WYZ A;  2E0N A;  2QBU A;  1V9A A;  2E8S A;  3FFY A;  2EH4 A;  2E7R A;  2KYY A;  2EK2 A;  2DV4 A;  2ELD A;  2EJZ A;  2EGS A;  2CBF A;  2PCG A;  2DV3 A;  2EL2 A;  1VCE A;  2DXV A;  1CBF A;  3NUT A;  1PJT A;  2HR8 A;  2HUX A;  2PCM A;  2EN5 A;  2PCK A;  1VA0 A;  2PB6 A;  2PCI A;  2P6L A;  1S4D A;  1VE2 A;  5HW4 A;  2NPN A;  2P5F A;  2ENI A;  2P6I A;  2P5C A;  2E8Q A;  3LMM A;  2YBO A;  2DSG A;  2DV5 A;  2EL3 A;  2OWV A;  2EJJ A;  2EHL A;  1PJS A;  2BB3 A;  3ND1 A;  2E8R A;  2EK3 A;  3NDC A;  2E4R A;  2P6K A;  2EMU A;  2E16 A;  2PCH A;  2Z6R A;  1VHV A;  2EGL A;  2ZVB A;  2EK4 A;  2ELE A;  2DSH A;  2ED5 A;  2DSI A;  4E16 A;  2DV7 A;  2E08 A;  2DEK A;  2EL0 A;  2PB4 A;  3I4T A;  2OWU A;  2DXX A;  2ZVC A;  2EL1 A;  2OWG A;  2EH2 A;  2EH5 A;  2PB5 A;  2HUQ A;  2EHC A;  2E15 A;  2E4N A;  2P6D A;  3KWP A;  2YBQ A;  2P2X A;  2E0K A;  2P9D A;  1WNG A;  3FQ6 A;  2HUT A;  2EGB A;  2HUV A;  3NEI A;  2OWF A;  1PJQ A;  2E07 A; 
#chains in the Genus database with same CATH homology
 2EMR A;  1WDE A;  2E17 A;  2E8H A;  2PCA A;  2ED3 A;  2EK7 A;  2EKA A;  2EEQ A;  2EJK A;  2OWK A;  2DXW A;  1WYZ A;  2E0N A;  2QBU A;  1V9A A;  2E8S A;  3FFY A;  2EH4 A;  2E7R A;  2KYY A;  2EK2 A;  2DV4 A;  2ELD A;  2EJZ A;  2EGS A;  2CBF A;  2PCG A;  2DV3 A;  2EL2 A;  1VCE A;  2DXV A;  1CBF A;  3NUT A;  1PJT A;  2HR8 A;  2HUX A;  2PCM A;  2EN5 A;  2PCK A;  1VA0 A;  2PB6 A;  2PCI A;  2P6L A;  1S4D A;  1VE2 A;  5HW4 A;  2NPN A;  2P5F A;  2ENI A;  2P6I A;  2P5C A;  2E8Q A;  3LMM A;  2YBO A;  2DSG A;  2DV5 A;  2EL3 A;  2OWV A;  2EJJ A;  2EHL A;  1PJS A;  2BB3 A;  3ND1 A;  2E8R A;  2EK3 A;  3NDC A;  2E4R A;  2P6K A;  2EMU A;  2E16 A;  2PCH A;  2Z6R A;  1VHV A;  2EGL A;  2ZVB A;  2EK4 A;  2ELE A;  2DSH A;  2ED5 A;  2DSI A;  4E16 A;  2DV7 A;  2E08 A;  2DEK A;  2EL0 A;  2PB4 A;  3I4T A;  2OWU A;  2DXX A;  2ZVC A;  2EL1 A;  2OWG A;  2EH2 A;  2EH5 A;  2PB5 A;  2HUQ A;  2EHC A;  2E15 A;  2E4N A;  2P6D A;  3KWP A;  2YBQ A;  2P2X A;  2E0K A;  2P9D A;  1WNG A;  3FQ6 A;  2HUT A;  2EGB A;  2HUV A;  3NEI A;  2OWF A;  1PJQ A;  2E07 A; 
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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