2L03A

Spatial structure of water-soluble lynx1
Total Genus 9
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
74
structure length
74
Chain Sequence
MLDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTPTRMKVSKSCVPRCFETVYDGYSKHASTTSCCQYDLCNG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Neuropeptide
molecule keywords Ly-6/neurotoxin-like protein 1
publication title NMR structure and action on nicotinic acetylcholine receptors of water-soluble domain of human LYNX1
pubmed doi rcsb
source organism Homo sapiens
total genus 9
structure length 74
sequence length 74
ec nomenclature
pdb deposition date 2010-06-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00021 UPAR_LY6 u-PAR/Ly-6 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 2l03A00
2MJ4A 2X8BB 2PJYC 1ERGA 2H8UA 1B41B 1KU6B 1RGJA 1JE9A 1DRSA 3BT2U 3BT1U 1TFSA 4P7UA 2FD6U 2LCRA 1LXHA 1CDTA 1TXAA 2QJBC 3NEQA 1W6BA 1TXBA 2HLQA 1HC9A 1NYUA 1L4WA 2CRTA 4ZQYA 1G6MA 2ERAA 2H64B 4EY8B 1MR6A 1CCQA 2CTXA 1F8UB 1NYSA 2OFSA 2PJYB 2QC1A 4OM4A 1CVOA 1PLOA 1NTXA 1IK8A 1ERAA 2MJ0A 4XJJA 2UX2A 1LJZA 4FAOE 1KC4A 1NORA 1CDSA 2I9BE 1BTEA 2BTXA 4AEAA 2MJYA 2MHYA 1MAHF 2HLRA 5DZ5A 1KTZB 1CODA 5IMYC 1QM7A 1LX5B 2L03A 5DO6A 1VB0A 1KXIA 1H0JA 2QJAC 1FFJA 3EVSC 1CB9A 1IKCA 3KFDI 1ES7B 2CRSA 4UY2C 1CXOA 2JVEA 1XT3A 1CREA 1NEAA 4RUDA 1CHVS 1CXNA 1RL5A 1LSIA 4IYEA 2VLWA 1FRAA 3KFDE 5DU1A 4QTIU 2CDXA 3QB4B 1HAAA 3HH7A 1IJCA 3U73U 4DO8A 4LFTA 4HQPF 1HOYA 1ONJA 2K3GA 3NDSA 2H7ZB 2GOOC 4BDTB 3EBXA 3FEVA 1KBAA 1BXPA 1HC9B 1QKEA 1CDRA 1LXGA 1KFHA 1CTXA 2MUPA 1IDIA 3VTSA 2UWRA 1FF4A 2H62C 2NBTA 1IDHA 2ABXA 2LA1A 1HAJA 2MUOA 1UG4A 1NTNA 3PLCA 1I02A 4BIKB 2J8BA 1REWC 1FSSB 1IQ9A 1KS6A 1M9ZA 2H62D 2CCXA 1JGKA 2GOOB 5IMTD 1QKDA 5EBXA 2N99A 1TGXA 2L5SA 2H7ZA 3ERAA 1IDLA 1YWHA 1S4YA 3LAQU 1F94A 6EBXA 3NH7A 1COEA 2JQPA 2QJ9C 1KL8A 2BHIA 1ABTA 1V6PA 1ZADA 1FSCA 1FASA 3U74U 1IDGA 1CRFA 1NXBA 2H64C 2MFAA 4OM5A 1JBDA 2H5FA 4FAOC 1KBTA 1KBSA 1CDQA
chains in the Genus database with same CATH superfamily
2MJ4A 2X8BB 2PJYC 1ERGA 2H8UA 1B41B 1KU6B 1RGJA 1JE9A 1DRSA 3BT2U 3BT1U 1TFSA 4P7UA 2FD6U 2LCRA 1LXHA 1CDTA 1TXAA 2QJBC 3NEQA 1W6BA 1TXBA 2HLQA 1HC9A 1NYUA 1L4WA 2CRTA 4ZQYA 1G6MA 2ERAA 2H64B 4EY8B 1MR6A 1CCQA 2CTXA 1F8UB 1NYSA 2OFSA 2PJYB 2QC1A 4KSNA 4OM4A 1CVOA 1PLOA 1NTXA 1IK8A 1ERAA 2MJ0A 4XJJA 2UX2A 1LJZA 4FAOE 1KC4A 1NORA 1CDSA 2I9BE 1BTEA 2BTXA 4AEAA 2MJYA 2MHYA 1MAHF 2HLRA 5DZ5A 1KTZB 1CODA 5IMYC 1QM7A 1LX5B 2L03A 5DO6A 1VB0A 1KXIA 1H0JA 2QJAC 1FFJA 3EVSC 1CB9A 1IKCA 3KFDI 1ES7B 2CRSA 4UY2C 1CXOA 2JVEA 1XT3A 1CREA 1NEAA 4RUDA 1CHVS 1CXNA 1RL5A 1LSIA 4IYEA 2VLWA 1FRAA 3KFDE 5DU1A 4QTIU 2CDXA 3QB4B 1HAAA 3HH7A 1IJCA 3U73U 4DO8A 4LFTA 4HQPF 1HOYA 1ONJA 2K3GA 3NDSA 2H7ZB 2GOOC 4BDTB 3EBXA 3FEVA 1KBAA 1BXPA 1HC9B 1QKEA 1CDRA 1LXGA 1KFHA 1CTXA 2MUPA 1IDIA 3VTSA 2UWRA 1FF4A 2H62C 2NBTA 1IDHA 2ABXA 2LA1A 1HAJA 2MUOA 1UG4A 1NTNA 3PLCA 1I02A 4BIKB 2J8BA 1REWC 1FSSB 1IQ9A 1KS6A 1M9ZA 2H62D 2CCXA 1JGKA 2GOOB 5IMTD 1QKDA 5EBXA 2N99A 1TGXA 2L5SA 2H7ZA 3ERAA 1IDLA 1YWHA 1S4YA 3LAQU 1F94A 6EBXA 3NH7A 1COEA 2JQPA 2QJ9C 1KL8A 2BHIA 1ABTA 1V6PA 1ZADA 1FSCA 1FASA 3U74U 1IDGA 1CRFA 1NXBA 2H64C 2MFAA 4OM5A 1JBDA 2H5FA 4FAOC 1KBTA 1KBSA 1CDQA
chains in the Genus database with same CATH topology
2MJ4A 2X8BB 2PJYC 1ERGA 2H8UA 1B41B 1KU6B 1RGJA 1JE9A 1DRSA 3BT2U 3BT1U 1TFSA 4P7UA 2FD6U 2LCRA 1LXHA 1CDTA 1TXAA 2QJBC 3NEQA 1W6BA 1TXBA 2HLQA 1HC9A 1NYUA 1L4WA 2CRTA 4ZQYA 1G6MA 2ERAA 2H64B 4EY8B 1MR6A 1CCQA 2CTXA 1F8UB 1NYSA 2OFSA 2PJYB 2QC1A 4KSNA 4OM4A 1CVOA 1PLOA 1NTXA 1IK8A 1ERAA 2MJ0A 4XJJA 2UX2A 1LJZA 4FAOE 1KC4A 1NORA 1CDSA 2I9BE 1BTEA 2BTXA 4AEAA 2MJYA 2MHYA 1MAHF 2HLRA 5DZ5A 1KTZB 1CODA 5IMYC 1QM7A 1LX5B 2L03A 5DO6A 1VB0A 1KXIA 1H0JA 2QJAC 1FFJA 3EVSC 1CB9A 1IKCA 3KFDI 1ES7B 2CRSA 4UY2C 1CXOA 2JVEA 1XT3A 1CREA 1NEAA 4RUDA 1CHVS 1CXNA 1RL5A 1LSIA 4IYEA 2VLWA 1FRAA 3KFDE 5DU1A 4QTIU 2CDXA 3QB4B 1HAAA 3HH7A 1IJCA 3U73U 4DO8A 4LFTA 4HQPF 1HOYA 1ONJA 2K3GA 3NDSA 2H7ZB 2GOOC 4BDTB 3EBXA 3FEVA 1KBAA 1BXPA 1HC9B 1QKEA 1CDRA 1LXGA 1KFHA 1CTXA 2MUPA 1IDIA 3VTSA 2UWRA 1FF4A 2H62C 2NBTA 1IDHA 2ABXA 2LA1A 1HAJA 2MUOA 1UG4A 1NTNA 3PLCA 1I02A 4BIKB 2J8BA 1REWC 1FSSB 1IQ9A 1KS6A 1M9ZA 2H62D 2CCXA 1JGKA 2GOOB 5IMTD 1QKDA 5EBXA 2N99A 1TGXA 2L5SA 2H7ZA 3ERAA 1IDLA 1YWHA 1S4YA 3LAQU 1F94A 6EBXA 3NH7A 1COEA 2JQPA 2QJ9C 1KL8A 2BHIA 1ABTA 1V6PA 1ZADA 1FSCA 1FASA 3U74U 1IDGA 1CRFA 1NXBA 2H64C 2MFAA 4OM5A 1JBDA 2H5FA 4FAOC 1KBTA 1KBSA 1CDQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MJ4 A;  2X8B B;  2PJY C;  1ERG A;  2H8U A;  1B41 B;  1KU6 B;  1RGJ A;  1JE9 A;  1DRS A;  3BT2 U;  3BT1 U;  1TFS A;  4P7U A;  2FD6 U;  2LCR A;  1LXH A;  1CDT A;  1TXA A;  2QJB C;  3NEQ A;  1W6B A;  1TXB A;  2HLQ A;  1HC9 A;  1NYU A;  1L4W A;  2CRT A;  4ZQY A;  1G6M A;  2ERA A;  2H64 B;  4EY8 B;  1MR6 A;  1CCQ A;  2CTX A;  1F8U B;  1NYS A;  2OFS A;  2PJY B;  2QC1 A;  4OM4 A;  1CVO A;  1PLO A;  1NTX A;  1IK8 A;  1ERA A;  2MJ0 A;  4XJJ A;  2UX2 A;  1LJZ A;  4FAO E;  1KC4 A;  1NOR A;  1CDS A;  2I9B E;  1BTE A;  2BTX A;  4AEA A;  2MJY A;  2MHY A;  1MAH F;  2HLR A;  5DZ5 A;  1KTZ B;  1COD A;  5IMY C;  1QM7 A;  1LX5 B;  2L03 A;  5DO6 A;  1VB0 A;  1KXI A;  1H0J A;  2QJA C;  1FFJ A;  3EVS C;  1CB9 A;  1IKC A;  3KFD I;  1ES7 B;  2CRS A;  4UY2 C;  1CXO A;  2JVE A;  1XT3 A;  1CRE A;  1NEA A;  4RUD A;  1CHV S;  1CXN A;  1RL5 A;  1LSI A;  4IYE A;  2VLW A;  1FRA A;  3KFD E;  5DU1 A;  4QTI U;  2CDX A;  3QB4 B;  1HAA A;  3HH7 A;  1IJC A;  3U73 U;  4DO8 A;  4LFT A;  4HQP F;  1HOY A;  1ONJ A;  2K3G A;  3NDS A;  2H7Z B;  2GOO C;  4BDT B;  3EBX A;  3FEV A;  1KBA A;  1BXP A;  1HC9 B;  1QKE A;  1CDR A;  1LXG A;  1KFH A;  1CTX A;  2MUP A;  1IDI A;  3VTS A;  2UWR A;  1FF4 A;  2H62 C;  2NBT A;  1IDH A;  2ABX A;  2LA1 A;  1HAJ A;  2MUO A;  1UG4 A;  1NTN A;  3PLC A;  1I02 A;  4BIK B;  2J8B A;  1REW C;  1FSS B;  1IQ9 A;  1KS6 A;  1M9Z A;  2H62 D;  2CCX A;  1JGK A;  2GOO B;  5IMT D;  1QKD A;  5EBX A;  2N99 A;  1TGX A;  2L5S A;  2H7Z A;  3ERA A;  1IDL A;  1YWH A;  1S4Y A;  3LAQ U;  1F94 A;  6EBX A;  3NH7 A;  1COE A;  2JQP A;  2QJ9 C;  1KL8 A;  2BHI A;  1ABT A;  1V6P A;  1ZAD A;  1FSC A;  1FAS A;  3U74 U;  1IDG A;  1CRF A;  1NXB A;  2H64 C;  2MFA A;  4OM5 A;  1JBD A;  2H5F A;  4FAO C;  1KBT A;  1KBS A;  1CDQ A; 
#chains in the Genus database with same CATH topology
 2MJ4 A;  2X8B B;  2PJY C;  1ERG A;  2H8U A;  1B41 B;  1KU6 B;  1RGJ A;  1JE9 A;  1DRS A;  3BT2 U;  3BT1 U;  1TFS A;  4P7U A;  2FD6 U;  2LCR A;  1LXH A;  1CDT A;  1TXA A;  2QJB C;  3NEQ A;  1W6B A;  1TXB A;  2HLQ A;  1HC9 A;  1NYU A;  1L4W A;  2CRT A;  4ZQY A;  1G6M A;  2ERA A;  2H64 B;  4EY8 B;  1MR6 A;  1CCQ A;  2CTX A;  1F8U B;  1NYS A;  2OFS A;  2PJY B;  2QC1 A;  4KSN A;  4OM4 A;  1CVO A;  1PLO A;  1NTX A;  1IK8 A;  1ERA A;  2MJ0 A;  4XJJ A;  2UX2 A;  1LJZ A;  4FAO E;  1KC4 A;  1NOR A;  1CDS A;  2I9B E;  1BTE A;  2BTX A;  4AEA A;  2MJY A;  2MHY A;  1MAH F;  2HLR A;  5DZ5 A;  1KTZ B;  1COD A;  5IMY C;  1QM7 A;  1LX5 B;  2L03 A;  5DO6 A;  1VB0 A;  1KXI A;  1H0J A;  2QJA C;  1FFJ A;  3EVS C;  1CB9 A;  1IKC A;  3KFD I;  1ES7 B;  2CRS A;  4UY2 C;  1CXO A;  2JVE A;  1XT3 A;  1CRE A;  1NEA A;  4RUD A;  1CHV S;  1CXN A;  1RL5 A;  1LSI A;  4IYE A;  2VLW A;  1FRA A;  3KFD E;  5DU1 A;  4QTI U;  2CDX A;  3QB4 B;  1HAA A;  3HH7 A;  1IJC A;  3U73 U;  4DO8 A;  4LFT A;  4HQP F;  1HOY A;  1ONJ A;  2K3G A;  3NDS A;  2H7Z B;  2GOO C;  4BDT B;  3EBX A;  3FEV A;  1KBA A;  1BXP A;  1HC9 B;  1QKE A;  1CDR A;  1LXG A;  1KFH A;  1CTX A;  2MUP A;  1IDI A;  3VTS A;  2UWR A;  1FF4 A;  2H62 C;  2NBT A;  1IDH A;  2ABX A;  2LA1 A;  1HAJ A;  2MUO A;  1UG4 A;  1NTN A;  3PLC A;  1I02 A;  4BIK B;  2J8B A;  1REW C;  1FSS B;  1IQ9 A;  1KS6 A;  1M9Z A;  2H62 D;  2CCX A;  1JGK A;  2GOO B;  5IMT D;  1QKD A;  5EBX A;  2N99 A;  1TGX A;  2L5S A;  2H7Z A;  3ERA A;  1IDL A;  1YWH A;  1S4Y A;  3LAQ U;  1F94 A;  6EBX A;  3NH7 A;  1COE A;  2JQP A;  2QJ9 C;  1KL8 A;  2BHI A;  1ABT A;  1V6P A;  1ZAD A;  1FSC A;  1FAS A;  3U74 U;  1IDG A;  1CRF A;  1NXB A;  2H64 C;  2MFA A;  4OM5 A;  1JBD A;  2H5F A;  4FAO C;  1KBT A;  1KBS A;  1CDQ A; 
#chains in the Genus database with same CATH homology
 2MJ4 A;  2X8B B;  2PJY C;  1ERG A;  2H8U A;  1B41 B;  1KU6 B;  1RGJ A;  1JE9 A;  1DRS A;  3BT2 U;  3BT1 U;  1TFS A;  4P7U A;  2FD6 U;  2LCR A;  1LXH A;  1CDT A;  1TXA A;  2QJB C;  3NEQ A;  1W6B A;  1TXB A;  2HLQ A;  1HC9 A;  1NYU A;  1L4W A;  2CRT A;  4ZQY A;  1G6M A;  2ERA A;  2H64 B;  4EY8 B;  1MR6 A;  1CCQ A;  2CTX A;  1F8U B;  1NYS A;  2OFS A;  2PJY B;  2QC1 A;  4KSN A;  4OM4 A;  1CVO A;  1PLO A;  1NTX A;  1IK8 A;  1ERA A;  2MJ0 A;  4XJJ A;  2UX2 A;  1LJZ A;  4FAO E;  1KC4 A;  1NOR A;  1CDS A;  2I9B E;  1BTE A;  2BTX A;  4AEA A;  2MJY A;  2MHY A;  1MAH F;  2HLR A;  5DZ5 A;  1KTZ B;  1COD A;  5IMY C;  1QM7 A;  1LX5 B;  2L03 A;  5DO6 A;  1VB0 A;  1KXI A;  1H0J A;  2QJA C;  1FFJ A;  3EVS C;  1CB9 A;  1IKC A;  3KFD I;  1ES7 B;  2CRS A;  4UY2 C;  1CXO A;  2JVE A;  1XT3 A;  1CRE A;  1NEA A;  4RUD A;  1CHV S;  1CXN A;  1RL5 A;  1LSI A;  4IYE A;  2VLW A;  1FRA A;  3KFD E;  5DU1 A;  4QTI U;  2CDX A;  3QB4 B;  1HAA A;  3HH7 A;  1IJC A;  3U73 U;  4DO8 A;  4LFT A;  4HQP F;  1HOY A;  1ONJ A;  2K3G A;  3NDS A;  2H7Z B;  2GOO C;  4BDT B;  3EBX A;  3FEV A;  1KBA A;  1BXP A;  1HC9 B;  1QKE A;  1CDR A;  1LXG A;  1KFH A;  1CTX A;  2MUP A;  1IDI A;  3VTS A;  2UWR A;  1FF4 A;  2H62 C;  2NBT A;  1IDH A;  2ABX A;  2LA1 A;  1HAJ A;  2MUO A;  1UG4 A;  1NTN A;  3PLC A;  1I02 A;  4BIK B;  2J8B A;  1REW C;  1FSS B;  1IQ9 A;  1KS6 A;  1M9Z A;  2H62 D;  2CCX A;  1JGK A;  2GOO B;  5IMT D;  1QKD A;  5EBX A;  2N99 A;  1TGX A;  2L5S A;  2H7Z A;  3ERA A;  1IDL A;  1YWH A;  1S4Y A;  3LAQ U;  1F94 A;  6EBX A;  3NH7 A;  1COE A;  2JQP A;  2QJ9 C;  1KL8 A;  2BHI A;  1ABT A;  1V6P A;  1ZAD A;  1FSC A;  1FAS A;  3U74 U;  1IDG A;  1CRF A;  1NXB A;  2H64 C;  2MFA A;  4OM5 A;  1JBD A;  2H5F A;  4FAO C;  1KBT A;  1KBS A;  1CDQ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...