The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
10
|
sequence length |
96
|
structure length |
96
|
Chain Sequence |
YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGSGGDVMVVGEPTLMGG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Transcription regulation/oncoprotein
|
| source organism |
Mus musculus
|
| publication title |
Structural basis of simultaneous recruitment of the transcriptional regulators LMO2 and FOG1/ZFPM1 by the transcription factor GATA1
pubmed doi rcsb |
| molecule keywords |
Erythroid transcription factor
|
| total genus |
10
|
| structure length |
96
|
| sequence length |
96
|
| ec nomenclature | |
| pdb deposition date | 2010-12-01 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF00412 | LIM | LIM domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Ribbon | Cysteine Rich Protein | Cysteine Rich Protein |
#chains in the Genus database with same CATH superfamily 2L6Y B; 1M3V A; 1CTL A; 1G47 A; 2MBV A; 2L4Z A; 2O10 A; 2CUP A; 1CXX A; 1V6G A; 2MIU A; 1B8T A; 1IML A; 1NYP A; 2XJZ A; 1X61 A; 2CU8 A; 2CO8 A; 2DFY C; 2DJ7 A; 1X3H A; 2DAR A; 2O13 A; 4KFZ A; 4HI8 B; 2IYB E; 2D8Z A; 2YPA C; 2DLO A; 2XJY A; 2D8X A; 2COR A; 1WYH A; 2KBX B; 1X6A A; 1X68 A; 2L6Z C; 1X64 A; 2CUQ A; 2EHE A; 2JTN A; 3IXE B; 2EGQ A; 1U5S B; 1X62 A; 1A7I A; 2LXD A; 2D8Y A; 1X63 A; 2CUR A; 2LZU A; 1J2O A; 4HI9 B; 2XQN T; 1IBI A; 1WIG A; 1RUT X; 1X4L A; 4JCJ A; 3MMK A; 1QLI A; 3F6Q B; #chains in the Genus database with same CATH topology 3NIM A; 2L4Z A; 2MIU A; 5LKX A; 2XJZ A; 2DJ7 A; 5A1L A; 4KFZ A; 2L6Z C; 1X6A A; 1X68 A; 1X64 A; 5FY1 A; 3IXE B; 1U5S B; 1A7I A; 2D8Y A; 4HI9 B; 4ASK A; 5FXZ A; 3ZLI A; 3NIJ A; 3AVS A; 4UF0 A; 3ZPO A; 3NIL A; 1M3V A; 1CTL A; 1G47 A; 1B8T A; 5FXW A; 4EZ4 A; 2CO8 A; 5LKU A; 1X3H A; 2DAR A; 5FY0 A; 2LXD A; 2XQN T; 5FP3 A; 2MBV A; 1IML A; 2O10 A; 1V6G A; 4EZH A; 3NIS A; 1X61 A; 4HI8 B; 2IYB E; 2D8Z A; 2DLO A; 2XJY A; 2COR A; 1WYH A; 5FYM A; 3NIH A; 1X62 A; 5FY7 A; 1X63 A; 2CUR A; 2LZU A; 2XUE A; 1WIG A; 4EYU A; 1RUT X; 1X4L A; 2YPA C; 3F6Q B; 2L6Y B; 4UF0 B; 3NIK A; 2CUP A; 1CXX A; 1NYP A; 2CU8 A; 2DFY C; 3AVR A; 5FXX A; 2O13 A; 5LKZ A; 2D8X A; 2KBX B; 5LKT A; 2CUQ A; 2EHE A; 2JTN A; 2EGQ A; 5FXV A; 1J2O A; 1IBI A; 3NIN A; 4JCJ A; 4BHW A; 3MMK A; 1QLI A; #chains in the Genus database with same CATH homology 3NIM A; 2L4Z A; 2MIU A; 5LKX A; 2XJZ A; 2DJ7 A; 5A1L A; 4KFZ A; 2L6Z C; 1X6A A; 1X68 A; 1X64 A; 5FY1 A; 3IXE B; 1U5S B; 1A7I A; 2D8Y A; 4HI9 B; 4ASK A; 5FXZ A; 3ZLI A; 3NIJ A; 3AVS A; 4UF0 A; 3ZPO A; 3NIL A; 1M3V A; 1CTL A; 1G47 A; 1B8T A; 5FXW A; 4EZ4 A; 2CO8 A; 5LKU A; 1X3H A; 2DAR A; 5FY0 A; 2LXD A; 2XQN T; 5FP3 A; 2MBV A; 1IML A; 2O10 A; 1V6G A; 4EZH A; 3NIS A; 1X61 A; 4HI8 B; 2IYB E; 2D8Z A; 2DLO A; 2XJY A; 2COR A; 1WYH A; 5FYM A; 3NIH A; 1X62 A; 5FY7 A; 1X63 A; 2CUR A; 2LZU A; 2XUE A; 1WIG A; 4EYU A; 1RUT X; 1X4L A; 2YPA C; 3F6Q B; 2L6Y B; 4UF0 B; 3NIK A; 2CUP A; 1CXX A; 1NYP A; 2CU8 A; 2DFY C; 3AVR A; 5FXX A; 2O13 A; 5LKZ A; 2D8X A; 2KBX B; 5LKT A; 2CUQ A; 2EHE A; 2JTN A; 2EGQ A; 5FXV A; 1J2O A; 1IBI A; 3NIN A; 4JCJ A; 4BHW A; 3MMK A; 1QLI A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
