2L8VA

Solution nmr structure of the phycobilisome linker polypeptide domain of cpcc (20-153) from thermosynechococcus elongatus, northeast structural genomics consortium target ter219a
Total Genus 38
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
143
structure length
143
Chain Sequence
MPVELRANWSEEDLETVIRAVYRQVLGNDYVMASERLVSAESLLRNGKITVREFVRAVAKSELYKEKFLYGNFQTRVIELNYKHLLGRAPYDESEVIFHLDLYENEGFDADIDSYIDSPEYTNSFGDWVVPYYRGLEHHHHHH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Photosynthesis
molecule keywords Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-assoc
publication title Solution NMR structure of the phycobilisome linker polypeptide domain of CpcC (20-153) from Thermosynechococcus elongatus, Northeast Structural Genomics Consortium Target TeR219A
rcsb
source organism Thermosynechococcus elongatus
total genus 38
structure length 143
sequence length 143
ec nomenclature
pdb deposition date 2011-01-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00427 PBS_linker_poly Phycobilisome Linker polypeptide
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3130.20 Mainly Alpha Orthogonal Bundle serine acetyltransferase, domain 1 serine acetyltransferase, domain 1 2l8vA01
3NPHB 2L8VA 3OHWA 3PRUA 2L06A 3OSJA 2KY4A 2L3WA
chains in the Genus database with same CATH superfamily
3OHWA 3Q1XA 3P47A 3P1BA 2L06A 3NPHB 3PRUA 3MC4A 1T3DA 4N6AA 1SSMA 3OSJA 4H7OA 3F1XA 4N69A 2L3WA 1S80A 1SSTA 3GVDA 2L8VA 4HZDA 4HZCA 4N6BA 1SSQA 2KY4A
chains in the Genus database with same CATH topology
3OHWA 3Q1XA 3P47A 3P1BA 2L06A 3NPHB 3PRUA 3MC4A 1T3DA 4N6AA 1SSMA 3OSJA 4H7OA 3F1XA 4N69A 2L3WA 1S80A 1SSTA 3GVDA 2L8VA 4HZDA 4HZCA 4N6BA 1SSQA 2KY4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NPH B;  2L8V A;  3OHW A;  3PRU A;  2L06 A;  3OSJ A;  2KY4 A;  2L3W A; 
#chains in the Genus database with same CATH topology
 3OHW A;  3Q1X A;  3P47 A;  3P1B A;  2L06 A;  3NPH B;  3PRU A;  3MC4 A;  1T3D A;  4N6A A;  1SSM A;  3OSJ A;  4H7O A;  3F1X A;  4N69 A;  2L3W A;  1S80 A;  1SST A;  3GVD A;  2L8V A;  4HZD A;  4HZC A;  4N6B A;  1SSQ A;  2KY4 A; 
#chains in the Genus database with same CATH homology
 3OHW A;  3Q1X A;  3P47 A;  3P1B A;  2L06 A;  3NPH B;  3PRU A;  3MC4 A;  1T3D A;  4N6A A;  1SSM A;  3OSJ A;  4H7O A;  3F1X A;  4N69 A;  2L3W A;  1S80 A;  1SST A;  3GVD A;  2L8V A;  4HZD A;  4HZC A;  4N6B A;  1SSQ A;  2KY4 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...