2L9SB

Solution structure of pf1 sid1-msin3a pah2 complex
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
94
structure length
94
Chain Sequence
SNASLQNNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSEFGQFLPDANS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription
molecule keywords PHD finger protein 12
publication title Solution Structure of the mSin3A PAH2-Pf1 SID1 Complex: A Mad1/Mxd1-Like Interaction Disrupted by MRG15 in the Rpd3S/Sin3S Complex.
pubmed doi rcsb
source organism Homo sapiens
total genus 26
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2011-02-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02671 PAH Paired amphipathic helix repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1160.11 Mainly Alpha Up-down Bundle Paired amphipathic helix 2 (pah2 repeat) Paired amphipathic helix 2l9sB00
1E91A 2CZYA 2F05A 2CR7A 2RMSA 1PD7A 1G1EB 2RMRA 2L9SB 1S5RB 2LD7B 1S5QB
chains in the Genus database with same CATH superfamily
4YL6A 2CZYA 1PD7A 2RMRA 4YKCA 2KBRA 4Y5OA 2LSRA 2KBQA 1E91A 2CR7A 2RMSA 5F3XA 2L9SB 1S5RB 2LD7B 2F05A 3K1RA 1G1EB 4FQNA 4YKDA 1S5QB
chains in the Genus database with same CATH topology
1E91A 2CZYA 2F05A 2CR7A 2RMSA 1PD7A 1G1EB 2RMRA 2L9SB 1S5RB 2LD7B 1S5QB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E91 A;  2CZY A;  2F05 A;  2CR7 A;  2RMS A;  1PD7 A;  1G1E B;  2RMR A;  2L9S B;  1S5R B;  2LD7 B;  1S5Q B; 
#chains in the Genus database with same CATH topology
 4YL6 A;  2CZY A;  1PD7 A;  2RMR A;  4YKC A;  2KBR A;  4Y5O A;  2LSR A;  2KBQ A;  1E91 A;  2CR7 A;  2RMS A;  5F3X A;  2L9S B;  1S5R B;  2LD7 B;  2F05 A;  3K1R A;  1G1E B;  4FQN A;  4YKD A;  1S5Q B; 
#chains in the Genus database with same CATH homology
 1E91 A;  2CZY A;  2F05 A;  2CR7 A;  2RMS A;  1PD7 A;  1G1E B;  2RMR A;  2L9S B;  1S5R B;  2LD7 B;  1S5Q B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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