2LCUA

Nmr structure of bc28.1
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
223
structure length
223
Chain Sequence
SSGIEGCTEDEKRDSVVEGATSVEASLKEQIDWLAERYSADLTNKDTSKWNTDEKVKELLNEKAVGIESRLLAIAKEFHKLKSVLCTGVNETPAHVANRVSPGDAISMLYVLSITHRELSSLKNKIDEWKKVKASEDGTKVIQNIKDDRTNTWFVAHGFKVAELNDVTLEKLATVVNELVSHKDMIYINDAMKQNVDKWTKEESERLAMMAEQGISGAKGKKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Bc28.1
publication title Structural and Functional Characterization of Bc28.1, Major Erythrocyte-binding Protein from Babesia canis Merozoite Surface.
pubmed doi rcsb
source organism Babesia canis
total genus 72
structure length 223
sequence length 223
ec nomenclature
pdb deposition date 2011-05-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.910.20 Mainly Alpha Up-down Bundle Heme Oxygenase; Chain A Heme Oxygenase; Chain A 2lcuA01
2LCUA
chains in the Genus database with same CATH superfamily
3OQLA 4GPHA 1TWRA 1DVGA 1V8XA 1WZDA 4GPFA 1S8CA 1UDDA 2QCXA 3TGMA 1OZEA 1WE1A 3NO6A 1XK0A 4GOHA 4WX0A 1UBBA 1IX4A 2Z68A 1IX3A 3B5OA 1OTVA 1WZGA 2Q4XA 1OTWA 1S13A 2GM7A 2QZCA 1P3TA 5BTQA 1TO9B 1YAFA 2DY5A 4G98A 1J77A 1IW1A 4G7PA 4G8PA 2RD3A 4WWZA 1IRMA 1WOWA 3I9UA 3MOOA 1OZRA 4G8UA 3I9TA 3HLXA 4G7UA 1WNXA 3B5PA 2GM8A 1OZWA 2A6BA 3HNHA 3I8RA 3IBXA 1XK3A 1RTWA 2E7EA 4FN6A 3DDEA 1TWNA 1WNWA 4WMHA 1P3UA 1N45A 4WWJA 1WWMA 3MVUA 1OYLA 3HMLA 4WD4A 4RAJA 1VGIA 1OZLA 1N3UA 4LQXA 4G8WA 4NY7A 1NI6A 2ZVUA 1ULXA 1XK1A 3BJDA 1J02A 3RM5A 2A2MA 1SK7A 1TYHA 1TO9A 2Q32A 2LCUA 1OYKA 4G7LA 4GPCA 1IVJA 3K4FA 1XK2A 3HOKA 1WOVA 3CZYA 1YAKA 1WZFA 4G99A 2A2OA 1J2CA 1WNVA 1Z72A 2RGZA 1P3VA 1T5PA 1RCWA 1WOXA 2QPPA 1XJZA 4G7TA 4MECA 2F2GA 1DVEA 1IW0A
chains in the Genus database with same CATH topology
2LCUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LCU A; 
#chains in the Genus database with same CATH topology
 3OQL A;  4GPH A;  1TWR A;  1DVG A;  1V8X A;  1WZD A;  4GPF A;  1S8C A;  1UDD A;  2QCX A;  3TGM A;  1OZE A;  1WE1 A;  3NO6 A;  1XK0 A;  4GOH A;  4WX0 A;  1UBB A;  1IX4 A;  2Z68 A;  1IX3 A;  3B5O A;  1OTV A;  1WZG A;  2Q4X A;  1OTW A;  1S13 A;  2GM7 A;  2QZC A;  1P3T A;  5BTQ A;  1TO9 B;  1YAF A;  2DY5 A;  4G98 A;  1J77 A;  1IW1 A;  4G7P A;  4G8P A;  2RD3 A;  4WWZ A;  1IRM A;  1WOW A;  3I9U A;  3MOO A;  1OZR A;  4G8U A;  3I9T A;  3HLX A;  4G7U A;  1WNX A;  3B5P A;  2GM8 A;  1OZW A;  2A6B A;  3HNH A;  3I8R A;  3IBX A;  1XK3 A;  1RTW A;  2E7E A;  4FN6 A;  3DDE A;  1TWN A;  1WNW A;  4WMH A;  1P3U A;  1N45 A;  4WWJ A;  1WWM A;  3MVU A;  1OYL A;  3HML A;  4WD4 A;  4RAJ A;  1VGI A;  1OZL A;  1N3U A;  4LQX A;  4G8W A;  4NY7 A;  1NI6 A;  2ZVU A;  1ULX A;  1XK1 A;  3BJD A;  1J02 A;  3RM5 A;  2A2M A;  1SK7 A;  1TYH A;  1TO9 A;  2Q32 A;  2LCU A;  1OYK A;  4G7L A;  4GPC A;  1IVJ A;  3K4F A;  1XK2 A;  3HOK A;  1WOV A;  3CZY A;  1YAK A;  1WZF A;  4G99 A;  2A2O A;  1J2C A;  1WNV A;  1Z72 A;  2RGZ A;  1P3V A;  1T5P A;  1RCW A;  1WOX A;  2QPP A;  1XJZ A;  4G7T A;  4MEC A;  2F2G A;  1DVE A;  1IW0 A; 
#chains in the Genus database with same CATH homology
 2LCU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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