2LD7B

Solution structure of the msin3a pah3-sap30 sid complex
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
75
structure length
75
Chain Sequence
SNASKHGVGTESLFFDKVRKALRSAEAYENFLRCLVIFNQEVISRAELVQLVSPFLGKFPELFNWFKNFLGYKES
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription
molecule keywords Histone deacetylase complex subunit SAP30
publication title Structure of the 30-kDa Sin3-associated protein (SAP30) in complex with the mammalian Sin3A corepressor and its role in nucleic acid binding.
pubmed doi rcsb
source organism Mus musculus
total genus 24
structure length 75
sequence length 75
ec nomenclature
pdb deposition date 2011-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02671 PAH Paired amphipathic helix repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1160.11 Mainly Alpha Up-down Bundle Paired amphipathic helix 2 (pah2 repeat) Paired amphipathic helix 2ld7B00
2L9SB 2RMSA 2CR7A 2CZYA 1PD7A 1S5RB 1G1EB 1S5QB 1E91A 2F05A 2RMRA 2LD7B
chains in the Genus database with same CATH superfamily
2RMSA 1PD7A 1S5RB 1G1EB 2KBRA 2L9SB 4YKCA 2CZYA 2F05A 2RMRA 2LD7B 2LSRA 1S5QB 4YL6A 3K1RA 2KBQA 5F3XA 4YKDA 4Y5OA 2CR7A 1E91A 4FQNA
chains in the Genus database with same CATH topology
2L9SB 2RMSA 2CR7A 2CZYA 1PD7A 1S5RB 1G1EB 1S5QB 1E91A 2F05A 2RMRA 2LD7B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2L9S B;  2RMS A;  2CR7 A;  2CZY A;  1PD7 A;  1S5R B;  1G1E B;  1S5Q B;  1E91 A;  2F05 A;  2RMR A;  2LD7 B; 
#chains in the Genus database with same CATH topology
 2RMS A;  1PD7 A;  1S5R B;  1G1E B;  2KBR A;  2L9S B;  4YKC A;  2CZY A;  2F05 A;  2RMR A;  2LD7 B;  2LSR A;  1S5Q B;  4YL6 A;  3K1R A;  2KBQ A;  5F3X A;  4YKD A;  4Y5O A;  2CR7 A;  1E91 A;  4FQN A; 
#chains in the Genus database with same CATH homology
 2L9S B;  2RMS A;  2CR7 A;  2CZY A;  1PD7 A;  1S5R B;  1G1E B;  1S5Q B;  1E91 A;  2F05 A;  2RMR A;  2LD7 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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