2LFKA

Nmr solution structure of native tdpi-short
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
57
structure length
57
Chain Sequence
GDKEECTVPIGWSEPVKGLCKARFTRYYCMGNCCKVYEGCYTGGYSRMGECARNCPG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase inhibitor
molecule keywords Tryptase inhibitor
publication title Oxidative folding and structural analyses of a kunitz-related inhibitor and its disulfide intermediates: functional implications.
pubmed doi rcsb
source organism Rhipicephalus appendiculatus
total genus 3
structure length 57
sequence length 57
ec nomenclature
pdb deposition date 2011-07-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.410.10 Few Secondary Structures Irregular Factor Xa Inhibitor Pancreatic trypsin inhibitor Kunitz domain 2lfkA01
1BRCI 3BTMI 1UUAA 1BPTA 3U1JE 3UOUB 4Y10I 1T8NB 1UUBA 3BTGI 1AAPA 5PTIA 1OA55 1SHPA 1D0DB 1LD6A 1Y62A 3BTFI 2HEXA 3BTWI 2LFKA 4ISLB 3BYBA 3FP6I 3BTHI 3WNYA 3AUIA 8PTIA 1CBWD 1P2QB 1G6XA 3FP7J 3T62D 3AUHA 3AUCA 2LFLA 2DDJA 2FI5I 1YC0I 1FY8I 3AUBA 3UIRC 1CO7I 3CI7A 4WWYC 1FAKI 1BZXI 3BTTI 1T7CB 1KTHA 3BTQI 1BIKA 2W8XA 5JB4A 5JB5A 1BZ5A 4ISNB 1DENA 1QLQA 3M7QB 4DG4C 1T8OB 2IJOI 2J6DA 2PTCI 3BTKI 1TAPA 2CA7A 3AUGA 4TPII 4Y0YI 5JB6A 1KIGI 4NTXB 2ODYE 1KUNA 1P2MB 1YKTB 1DEMA 3TGII 1D0DA 4Y11I 1MTND 1B0CA 2KCRA 4NTYB 1P2NB 5C67C 2KAII 1AALA 2M01A 4U32X 1T8MB 6PTIA 2TGPI 7PTIA 4PTIA 1BTIA 2RA3C 1IRHA 1YLDB 1OA65 3GYMI 2FTLI 3AUEA 3D65I 3P92E 1BRBI 1DTKA 3BTEI 5JB7A 1JC6A 2R9PE 1BF0A 1TCPA 9PTIA 4NTWB 4WXVC 2KNTA 4BNRI 1JV8A 3L33E 1ADZA 3LDMA 1ZJDB 2ZJXA 2TPII 1LD5A 2UUYB 1TPAI 2ZVXA 3OTJI 1P2KI 1P2JI 1P2OB 4BD9B 1ZR0B 1EAWB 1TFXC 2JOTA 1DTXA 1BTHP 1JV9A 4DTGK 3BTDI 3LDJA 1T8LB 1TAWB 1YLCB 3P95E 1BHCA 2FI4I 1NAGA 1BUNB 1KNTA 1BPIA 4Y0ZI 1F5RI 3TPII 3OFWA 3TGKI 1CA0D 1F7ZI 1FANA 2M99A 1P2II 2FI3I 2FTMB 3L3TE 1EJMB 4ISOB 4BQDA 1PITA 3AUDA 4U30W 3LDIA 1TOCR 2UUXA 3FP8I 3TGJI 2DDIA 1K6UA
chains in the Genus database with same CATH superfamily
1BRCI 3BTMI 1UUAA 1BPTA 3U1JE 3UOUB 4Y10I 1T8NB 1UUBA 3BTGI 1AAPA 5PTIA 1OA55 1SHPA 1D0DB 1LD6A 1Y62A 3BTFI 2HEXA 3BTWI 2LFKA 4ISLB 3BYBA 3FP6I 3BTHI 3WNYA 3AUIA 8PTIA 1CBWD 1P2QB 1G6XA 3FP7J 3T62D 3AUHA 3AUCA 2LFLA 2DDJA 2FI5I 1YC0I 1FY8I 3AUBA 3UIRC 1CO7I 3CI7A 4WWYC 1FAKI 1BZXI 3BTTI 1T7CB 1KTHA 3BTQI 1BIKA 2W8XA 5JB4A 5JB5A 1BZ5A 4ISNB 1DENA 1QLQA 3M7QB 4DG4C 1T8OB 2IJOI 2J6DA 2PTCI 3BTKI 1TAPA 2CA7A 3AUGA 4TPII 4Y0YI 5JB6A 1KIGI 4NTXB 2ODYE 1KUNA 1P2MB 1YKTB 1DEMA 3TGII 1D0DA 4Y11I 1MTND 1B0CA 2KCRA 4NTYB 1P2NB 5C67C 2KAII 1AALA 2M01A 4U32X 1T8MB 6PTIA 2TGPI 7PTIA 4PTIA 1BTIA 2RA3C 1IRHA 1YLDB 1OA65 3GYMI 2FTLI 3AUEA 3D65I 3P92E 1BRBI 1DTKA 3BTEI 5JB7A 1JC6A 2R9PE 1BF0A 1TCPA 9PTIA 4NTWB 4WXVC 2KNTA 4BNRI 1JV8A 3L33E 1ADZA 3LDMA 1ZJDB 2ZJXA 2TPII 1LD5A 2UUYB 1TPAI 2ZVXA 3OTJI 1P2KI 1P2JI 1P2OB 4BD9B 1ZR0B 1EAWB 1TFXC 2JOTA 1DTXA 1BTHP 1JV9A 4DTGK 3BTDI 3LDJA 1T8LB 1TAWB 1YLCB 3P95E 1BHCA 2FI4I 1NAGA 1BUNB 1KNTA 1BPIA 4Y0ZI 1F5RI 3TPII 3OFWA 3TGKI 1CA0D 1F7ZI 1FANA 2M99A 1P2II 2FI3I 2FTMB 3L3TE 1EJMB 4ISOB 4BQDA 1PITA 3AUDA 4U30W 3LDIA 1TOCR 2UUXA 3FP8I 3TGJI 2DDIA 1K6UA
chains in the Genus database with same CATH topology
1BRCI 3BTMI 1UUAA 1BPTA 3U1JE 3UOUB 4Y10I 1T8NB 1UUBA 3BTGI 1AAPA 5PTIA 1OA55 1SHPA 1D0DB 1LD6A 1Y62A 3BTFI 2HEXA 3BTWI 2LFKA 4ISLB 3BYBA 3FP6I 3BTHI 3WNYA 3AUIA 8PTIA 1CBWD 1P2QB 1G6XA 3FP7J 3T62D 3AUHA 3AUCA 2LFLA 2DDJA 2FI5I 1YC0I 1FY8I 3AUBA 3UIRC 1CO7I 3CI7A 4WWYC 1FAKI 1BZXI 3BTTI 1T7CB 1KTHA 3BTQI 1BIKA 2W8XA 5JB4A 5JB5A 1BZ5A 4ISNB 1DENA 1QLQA 3M7QB 4DG4C 1T8OB 2IJOI 2J6DA 2PTCI 3BTKI 1TAPA 2CA7A 3AUGA 4TPII 4Y0YI 5JB6A 1KIGI 4NTXB 2ODYE 1KUNA 1P2MB 1YKTB 1DEMA 3TGII 1D0DA 4Y11I 1MTND 1B0CA 2KCRA 4NTYB 1P2NB 5C67C 2KAII 1AALA 2M01A 4U32X 1T8MB 6PTIA 2TGPI 7PTIA 4PTIA 1BTIA 2RA3C 1IRHA 1YLDB 1OA65 3GYMI 2FTLI 3AUEA 3D65I 3P92E 1BRBI 1DTKA 3BTEI 5JB7A 1JC6A 2R9PE 1BF0A 1TCPA 9PTIA 4NTWB 4WXVC 2KNTA 4BNRI 1JV8A 3L33E 1ADZA 3LDMA 1ZJDB 2ZJXA 2TPII 1LD5A 2UUYB 1TPAI 2ZVXA 3OTJI 1P2KI 1P2JI 1P2OB 4BD9B 1ZR0B 1EAWB 1TFXC 2JOTA 1DTXA 1BTHP 1JV9A 4DTGK 3BTDI 3LDJA 1T8LB 1TAWB 1YLCB 3P95E 1BHCA 2FI4I 1NAGA 1BUNB 1KNTA 1BPIA 4Y0ZI 1F5RI 3TPII 3OFWA 3TGKI 1CA0D 1F7ZI 1FANA 2M99A 1P2II 2FI3I 2FTMB 3L3TE 1EJMB 4ISOB 4BQDA 1PITA 3AUDA 4U30W 3LDIA 1TOCR 2UUXA 3FP8I 3TGJI 2DDIA 1K6UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BRC I;  3BTM I;  1UUA A;  1BPT A;  3U1J E;  3UOU B;  4Y10 I;  1T8N B;  1UUB A;  3BTG I;  1AAP A;  5PTI A;  1OA5 5;  1SHP A;  1D0D B;  1LD6 A;  1Y62 A;  3BTF I;  2HEX A;  3BTW I;  2LFK A;  4ISL B;  3BYB A;  3FP6 I;  3BTH I;  3WNY A;  3AUI A;  8PTI A;  1CBW D;  1P2Q B;  1G6X A;  3FP7 J;  3T62 D;  3AUH A;  3AUC A;  2LFL A;  2DDJ A;  2FI5 I;  1YC0 I;  1FY8 I;  3AUB A;  3UIR C;  1CO7 I;  3CI7 A;  4WWY C;  1FAK I;  1BZX I;  3BTT I;  1T7C B;  1KTH A;  3BTQ I;  1BIK A;  2W8X A;  5JB4 A;  5JB5 A;  1BZ5 A;  4ISN B;  1DEN A;  1QLQ A;  3M7Q B;  4DG4 C;  1T8O B;  2IJO I;  2J6D A;  2PTC I;  3BTK I;  1TAP A;  2CA7 A;  3AUG A;  4TPI I;  4Y0Y I;  5JB6 A;  1KIG I;  4NTX B;  2ODY E;  1KUN A;  1P2M B;  1YKT B;  1DEM A;  3TGI I;  1D0D A;  4Y11 I;  1MTN D;  1B0C A;  2KCR A;  4NTY B;  1P2N B;  5C67 C;  2KAI I;  1AAL A;  2M01 A;  4U32 X;  1T8M B;  6PTI A;  2TGP I;  7PTI A;  4PTI A;  1BTI A;  2RA3 C;  1IRH A;  1YLD B;  1OA6 5;  3GYM I;  2FTL I;  3AUE A;  3D65 I;  3P92 E;  1BRB I;  1DTK A;  3BTE I;  5JB7 A;  1JC6 A;  2R9P E;  1BF0 A;  1TCP A;  9PTI A;  4NTW B;  4WXV C;  2KNT A;  4BNR I;  1JV8 A;  3L33 E;  1ADZ A;  3LDM A;  1ZJD B;  2ZJX A;  2TPI I;  1LD5 A;  2UUY B;  1TPA I;  2ZVX A;  3OTJ I;  1P2K I;  1P2J I;  1P2O B;  4BD9 B;  1ZR0 B;  1EAW B;  1TFX C;  2JOT A;  1DTX A;  1BTH P;  1JV9 A;  4DTG K;  3BTD I;  3LDJ A;  1T8L B;  1TAW B;  1YLC B;  3P95 E;  1BHC A;  2FI4 I;  1NAG A;  1BUN B;  1KNT A;  1BPI A;  4Y0Z I;  1F5R I;  3TPI I;  3OFW A;  3TGK I;  1CA0 D;  1F7Z I;  1FAN A;  2M99 A;  1P2I I;  2FI3 I;  2FTM B;  3L3T E;  1EJM B;  4ISO B;  4BQD A;  1PIT A;  3AUD A;  4U30 W;  3LDI A;  1TOC R;  2UUX A;  3FP8 I;  3TGJ I;  2DDI A;  1K6U A; 
#chains in the Genus database with same CATH topology
 1BRC I;  3BTM I;  1UUA A;  1BPT A;  3U1J E;  3UOU B;  4Y10 I;  1T8N B;  1UUB A;  3BTG I;  1AAP A;  5PTI A;  1OA5 5;  1SHP A;  1D0D B;  1LD6 A;  1Y62 A;  3BTF I;  2HEX A;  3BTW I;  2LFK A;  4ISL B;  3BYB A;  3FP6 I;  3BTH I;  3WNY A;  3AUI A;  8PTI A;  1CBW D;  1P2Q B;  1G6X A;  3FP7 J;  3T62 D;  3AUH A;  3AUC A;  2LFL A;  2DDJ A;  2FI5 I;  1YC0 I;  1FY8 I;  3AUB A;  3UIR C;  1CO7 I;  3CI7 A;  4WWY C;  1FAK I;  1BZX I;  3BTT I;  1T7C B;  1KTH A;  3BTQ I;  1BIK A;  2W8X A;  5JB4 A;  5JB5 A;  1BZ5 A;  4ISN B;  1DEN A;  1QLQ A;  3M7Q B;  4DG4 C;  1T8O B;  2IJO I;  2J6D A;  2PTC I;  3BTK I;  1TAP A;  2CA7 A;  3AUG A;  4TPI I;  4Y0Y I;  5JB6 A;  1KIG I;  4NTX B;  2ODY E;  1KUN A;  1P2M B;  1YKT B;  1DEM A;  3TGI I;  1D0D A;  4Y11 I;  1MTN D;  1B0C A;  2KCR A;  4NTY B;  1P2N B;  5C67 C;  2KAI I;  1AAL A;  2M01 A;  4U32 X;  1T8M B;  6PTI A;  2TGP I;  7PTI A;  4PTI A;  1BTI A;  2RA3 C;  1IRH A;  1YLD B;  1OA6 5;  3GYM I;  2FTL I;  3AUE A;  3D65 I;  3P92 E;  1BRB I;  1DTK A;  3BTE I;  5JB7 A;  1JC6 A;  2R9P E;  1BF0 A;  1TCP A;  9PTI A;  4NTW B;  4WXV C;  2KNT A;  4BNR I;  1JV8 A;  3L33 E;  1ADZ A;  3LDM A;  1ZJD B;  2ZJX A;  2TPI I;  1LD5 A;  2UUY B;  1TPA I;  2ZVX A;  3OTJ I;  1P2K I;  1P2J I;  1P2O B;  4BD9 B;  1ZR0 B;  1EAW B;  1TFX C;  2JOT A;  1DTX A;  1BTH P;  1JV9 A;  4DTG K;  3BTD I;  3LDJ A;  1T8L B;  1TAW B;  1YLC B;  3P95 E;  1BHC A;  2FI4 I;  1NAG A;  1BUN B;  1KNT A;  1BPI A;  4Y0Z I;  1F5R I;  3TPI I;  3OFW A;  3TGK I;  1CA0 D;  1F7Z I;  1FAN A;  2M99 A;  1P2I I;  2FI3 I;  2FTM B;  3L3T E;  1EJM B;  4ISO B;  4BQD A;  1PIT A;  3AUD A;  4U30 W;  3LDI A;  1TOC R;  2UUX A;  3FP8 I;  3TGJ I;  2DDI A;  1K6U A; 
#chains in the Genus database with same CATH homology
 1BRC I;  3BTM I;  1UUA A;  1BPT A;  3U1J E;  3UOU B;  4Y10 I;  1T8N B;  1UUB A;  3BTG I;  1AAP A;  5PTI A;  1OA5 5;  1SHP A;  1D0D B;  1LD6 A;  1Y62 A;  3BTF I;  2HEX A;  3BTW I;  2LFK A;  4ISL B;  3BYB A;  3FP6 I;  3BTH I;  3WNY A;  3AUI A;  8PTI A;  1CBW D;  1P2Q B;  1G6X A;  3FP7 J;  3T62 D;  3AUH A;  3AUC A;  2LFL A;  2DDJ A;  2FI5 I;  1YC0 I;  1FY8 I;  3AUB A;  3UIR C;  1CO7 I;  3CI7 A;  4WWY C;  1FAK I;  1BZX I;  3BTT I;  1T7C B;  1KTH A;  3BTQ I;  1BIK A;  2W8X A;  5JB4 A;  5JB5 A;  1BZ5 A;  4ISN B;  1DEN A;  1QLQ A;  3M7Q B;  4DG4 C;  1T8O B;  2IJO I;  2J6D A;  2PTC I;  3BTK I;  1TAP A;  2CA7 A;  3AUG A;  4TPI I;  4Y0Y I;  5JB6 A;  1KIG I;  4NTX B;  2ODY E;  1KUN A;  1P2M B;  1YKT B;  1DEM A;  3TGI I;  1D0D A;  4Y11 I;  1MTN D;  1B0C A;  2KCR A;  4NTY B;  1P2N B;  5C67 C;  2KAI I;  1AAL A;  2M01 A;  4U32 X;  1T8M B;  6PTI A;  2TGP I;  7PTI A;  4PTI A;  1BTI A;  2RA3 C;  1IRH A;  1YLD B;  1OA6 5;  3GYM I;  2FTL I;  3AUE A;  3D65 I;  3P92 E;  1BRB I;  1DTK A;  3BTE I;  5JB7 A;  1JC6 A;  2R9P E;  1BF0 A;  1TCP A;  9PTI A;  4NTW B;  4WXV C;  2KNT A;  4BNR I;  1JV8 A;  3L33 E;  1ADZ A;  3LDM A;  1ZJD B;  2ZJX A;  2TPI I;  1LD5 A;  2UUY B;  1TPA I;  2ZVX A;  3OTJ I;  1P2K I;  1P2J I;  1P2O B;  4BD9 B;  1ZR0 B;  1EAW B;  1TFX C;  2JOT A;  1DTX A;  1BTH P;  1JV9 A;  4DTG K;  3BTD I;  3LDJ A;  1T8L B;  1TAW B;  1YLC B;  3P95 E;  1BHC A;  2FI4 I;  1NAG A;  1BUN B;  1KNT A;  1BPI A;  4Y0Z I;  1F5R I;  3TPI I;  3OFW A;  3TGK I;  1CA0 D;  1F7Z I;  1FAN A;  2M99 A;  1P2I I;  2FI3 I;  2FTM B;  3L3T E;  1EJM B;  4ISO B;  4BQD A;  1PIT A;  3AUD A;  4U30 W;  3LDI A;  1TOC R;  2UUX A;  3FP8 I;  3TGJ I;  2DDI A;  1K6U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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