2LFWA

Nmr structure of the phyrsl-nepr complex from sphingomonas sp. fr1
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
157
structure length
157
Chain Sequence
MSLGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRDVDPRLGLYRMFQGIWASANADGEAQTSQSDAEGTEAVARARLARMTPLSRQALLLTAMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRALELVPRGSHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords PhyR sigma-like domain
publication title Structural basis for sigma factor mimicry in the general stress response of Alphaproteobacteria.
pubmed doi rcsb
source organism Sphingomonas sp. fr1
molecule tags Signaling protein
total genus 44
structure length 157
sequence length 157
ec nomenclature
pdb deposition date 2011-07-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.140.160 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A; domain 3 2lfwA01
4QICA 2LFWA 4G97A 3N0RA 1RP3A 1SC5A
chains in the Genus database with same CATH superfamily
1FS8A 2CJ6A 4HKRA 4AKHA 4KTOA 3SCEA 3II9A 4AI6A 4IV6A 4H85A 4DOYA 3TZ5A 3C2PA 4L3YA 2UXWA 2OEVA 2XS8A 1X90A 4AKIA 5M4KA 4Q5CA 3MMOA 4FF3A 2GBBA 1U8VA 2JBSA 4LQSB 2YYLA 1OAHA 3Q0AA 4N5FA 1GKZA 1GU6A 1QDBA 2Q8HA 3C3LA 4FF2A 2CJ7A 3MXLA 2E80A 3BNJA 4FZ4A 1PI1A 3GNCA 5M4NA 2ZDXA 1R3BA 2BU6A 4X28C 2AZEA 3R7KA 3VADA 3MPIA 2OEXA 4L38A 2XS1A 3CRKA 2WBIA 5B5VA 3X0YA 2CJ8A 3D9FA 1FS7A 1WS9A 1XFZA 2BU2A 1XG2B 2VIGA 2YYMA 3TTBA 1FS9A 2IX6A 3SXQA 1SIQA 3D1IA 3S7WA 4XVXA 3OWMA 2OT4A 2RDZA 2R0MA 4KSAA 3M9VA 4QICA 2Q8FA 1XFVA 2YYKA 4MP7A 4Q0TA 4V25A 2DDHA 3RKHA 3MDDA 4MPCA 3MKHA 2E0AA 2ZKJA 2R0NA 4E01A 3VKHA 5B5WA 3D6BA 4NXLA 4KSFA 2D29A 2FONA 3L1TA 5BRMA 2LFWA 2EC5A 4KCFA 1BUCA 2A1TA 4H81A 1S26A 2FP1A 4W9UA 5K3GA 1GKXA 3C46A 2JBRA 1PK0A 4FF1A 2CJ4A 4Q4UA 2R03A 2AO2A 2QR4A 4WJYA 3D9GA 3PFDA 3FCJA 1IVHA 2PNRA 3CRLA 3D2RA 3TORA 3LGQA 2EBFX 2VF1A 2YYJA 1Y8NA 2YYIA 4G5EA 5GJWE 2ZO5A 2RFQA 3CE2A 3KMLA 3BNGA 4G97A 4MPEA 5J6AA 2C12A 2XQRB 3AFFA 3TZ4A 3D9DA 4IRNA 3X29A 3D9EA 4X28A 3BNFA 2BU7A 4H7QA 4LQQB 1SK6A 2JIFA 4RM7A 2VR0A 4L1FA 3UU9A 4JEKA 1RP3A 3LG1A 1SC5A 4L3ZA 2BTZA 1XFUA 3NF4A 5K3IA 2F6LA 4MP2A 2OJQA 1UDYA 3X0XA 1LVCA 5BRKA 3B96A 4DZYA 1EGDA 3Q23A 1RJ4A 2IX5A 1R2JA 2E81A 2PO4A 2ZDYA 4HR3A 1UKWA 3GQTA 3TZ2A 4OO2A 1Y0VA 3SWOA 2CJ5A 2JBTA 4ZYJA 4Q1OA 1EGCA 3N0RA 1K90A 2J7AA 5GJVE 4F0XA 3SF6A 2OR0A 1Y8OA 3OWAA 2Q8GA 2REHA 4MPNA 4AKGA 1RJ1A 1XFXA 1X8ZA 2FP2A 2DVLA 4L3XA 2R02A 5J71A 5M4PA 2Z1QA 4E02A 1XFYA 1JQIA 4ZXVA 1T9GA 3F29A 3UBRA 4O5MA 2YGWA 3EOMA 3FO3A 2C0UA 2BU8A 3MPJA 1XFWA 4JIOA 1JM6A 4Q17A 3OIBA 3TZ0A 2EBHX 2YYGA 4V26A 4U83A 3BNHA 3P4TA 5K3JA 4E00A 5B6BA 2R05A 4FF4A 3AFEA 2RF7A 5K3HA 4J1VA 3MDEA 2EBAA 3HWCA 4KS9A 1K93A 4Q5BA 2Q8IA 4HKSA 2CX9A 2PG0A 1X91A 2HJNA 1W07A 4M9AA 3Q22A 3VKGA 4JIZA 5M4MA 1IS2A 3GM6A 1SIRA 1Y8PA 2BU5A 1K8TA 3Q24A 4P79A 1GJVA 3EONA 4P13A 1RX0A 1EGEA 2ZAFA
chains in the Genus database with same CATH topology
4HKRA 4KSAA 4AKHA 4QICA 1XFXA 1XFVA 2FP2A 4AI6A 1SK6A 4P79A 3C2PA 1XFYA 3VKHA 1RP3A 1SC5A 4KSFA 4AKIA 4FF3A 2YGWA 1XFUA 2LFWA 2EC5A 2F6LA 2GBBA 1S26A 2FP1A 1XFWA 3Q0AA 3C46A 4FF1A 1PK0A 3C3LA 4FF2A 4FZ4A 1LVCA 2EBHX 4FF4A 3Q23A 2AO2A 2QR4A 2PO4A 2AZEA 4KS9A 1K93A 2EBFX 1Y0VA 2VF1A 4HKSA 3Q22A 3VKGA 3CE2A 3KMLA 1XFZA 4G97A 3Q24A 1K8TA 3N0RA 1K90A 4F0XA 5GJVE 3X29A 5GJWE 4AKGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QIC A;  2LFW A;  4G97 A;  3N0R A;  1RP3 A;  1SC5 A; 
#chains in the Genus database with same CATH topology
 1FS8 A;  2CJ6 A;  4HKR A;  4AKH A;  4KTO A;  3SCE A;  3II9 A;  4AI6 A;  4IV6 A;  4H85 A;  4DOY A;  3TZ5 A;  3C2P A;  4L3Y A;  2UXW A;  2OEV A;  2XS8 A;  1X90 A;  4AKI A;  5M4K A;  4Q5C A;  3MMO A;  4FF3 A;  2GBB A;  1U8V A;  2JBS A;  4LQS B;  2YYL A;  1OAH A;  3Q0A A;  4N5F A;  1GKZ A;  1GU6 A;  1QDB A;  2Q8H A;  3C3L A;  4FF2 A;  2CJ7 A;  3MXL A;  2E80 A;  3BNJ A;  4FZ4 A;  1PI1 A;  3GNC A;  5M4N A;  2ZDX A;  1R3B A;  2BU6 A;  4X28 C;  2AZE A;  3R7K A;  3VAD A;  3MPI A;  2OEX A;  4L38 A;  2XS1 A;  3CRK A;  2WBI A;  5B5V A;  3X0Y A;  2CJ8 A;  3D9F A;  1FS7 A;  1WS9 A;  1XFZ A;  2BU2 A;  1XG2 B;  2VIG A;  2YYM A;  3TTB A;  1FS9 A;  2IX6 A;  3SXQ A;  1SIQ A;  3D1I A;  3S7W A;  4XVX A;  3OWM A;  2OT4 A;  2RDZ A;  2R0M A;  4KSA A;  3M9V A;  4QIC A;  2Q8F A;  1XFV A;  2YYK A;  4MP7 A;  4Q0T A;  4V25 A;  2DDH A;  3RKH A;  3MDD A;  4MPC A;  3MKH A;  2E0A A;  2ZKJ A;  2R0N A;  4E01 A;  3VKH A;  5B5W A;  3D6B A;  4NXL A;  4KSF A;  2D29 A;  2FON A;  3L1T A;  5BRM A;  2LFW A;  2EC5 A;  4KCF A;  1BUC A;  2A1T A;  4H81 A;  1S26 A;  2FP1 A;  4W9U A;  5K3G A;  1GKX A;  3C46 A;  2JBR A;  1PK0 A;  4FF1 A;  2CJ4 A;  4Q4U A;  2R03 A;  2AO2 A;  2QR4 A;  4WJY A;  3D9G A;  3PFD A;  3FCJ A;  1IVH A;  2PNR A;  3CRL A;  3D2R A;  3TOR A;  3LGQ A;  2EBF X;  2VF1 A;  2YYJ A;  1Y8N A;  2YYI A;  4G5E A;  5GJW E;  2ZO5 A;  2RFQ A;  3CE2 A;  3KML A;  3BNG A;  4G97 A;  4MPE A;  5J6A A;  2C12 A;  2XQR B;  3AFF A;  3TZ4 A;  3D9D A;  4IRN A;  3X29 A;  3D9E A;  4X28 A;  3BNF A;  2BU7 A;  4H7Q A;  4LQQ B;  1SK6 A;  2JIF A;  4RM7 A;  2VR0 A;  4L1F A;  3UU9 A;  4JEK A;  1RP3 A;  3LG1 A;  1SC5 A;  4L3Z A;  2BTZ A;  1XFU A;  3NF4 A;  5K3I A;  2F6L A;  4MP2 A;  2OJQ A;  1UDY A;  3X0X A;  1LVC A;  5BRK A;  3B96 A;  4DZY A;  1EGD A;  3Q23 A;  1RJ4 A;  2IX5 A;  1R2J A;  2E81 A;  2PO4 A;  2ZDY A;  4HR3 A;  1UKW A;  3GQT A;  3TZ2 A;  4OO2 A;  1Y0V A;  3SWO A;  2CJ5 A;  2JBT A;  4ZYJ A;  4Q1O A;  1EGC A;  3N0R A;  1K90 A;  2J7A A;  5GJV E;  4F0X A;  3SF6 A;  2OR0 A;  1Y8O A;  3OWA A;  2Q8G A;  2REH A;  4MPN A;  4AKG A;  1RJ1 A;  1XFX A;  1X8Z A;  2FP2 A;  2DVL A;  4L3X A;  2R02 A;  5J71 A;  5M4P A;  2Z1Q A;  4E02 A;  1XFY A;  1JQI A;  4ZXV A;  1T9G A;  3F29 A;  3UBR A;  4O5M A;  2YGW A;  3EOM A;  3FO3 A;  2C0U A;  2BU8 A;  3MPJ A;  1XFW A;  4JIO A;  1JM6 A;  4Q17 A;  3OIB A;  3TZ0 A;  2EBH X;  2YYG A;  4V26 A;  4U83 A;  3BNH A;  3P4T A;  5K3J A;  4E00 A;  5B6B A;  2R05 A;  4FF4 A;  3AFE A;  2RF7 A;  5K3H A;  4J1V A;  3MDE A;  2EBA A;  3HWC A;  4KS9 A;  1K93 A;  4Q5B A;  2Q8I A;  4HKS A;  2CX9 A;  2PG0 A;  1X91 A;  2HJN A;  1W07 A;  4M9A A;  3Q22 A;  3VKG A;  4JIZ A;  5M4M A;  1IS2 A;  3GM6 A;  1SIR A;  1Y8P A;  2BU5 A;  1K8T A;  3Q24 A;  4P79 A;  1GJV A;  3EON A;  4P13 A;  1RX0 A;  1EGE A;  2ZAF A; 
#chains in the Genus database with same CATH homology
 4HKR A;  4KSA A;  4AKH A;  4QIC A;  1XFX A;  1XFV A;  2FP2 A;  4AI6 A;  1SK6 A;  4P79 A;  3C2P A;  1XFY A;  3VKH A;  1RP3 A;  1SC5 A;  4KSF A;  4AKI A;  4FF3 A;  2YGW A;  1XFU A;  2LFW A;  2EC5 A;  2F6L A;  2GBB A;  1S26 A;  2FP1 A;  1XFW A;  3Q0A A;  3C46 A;  4FF1 A;  1PK0 A;  3C3L A;  4FF2 A;  4FZ4 A;  1LVC A;  2EBH X;  4FF4 A;  3Q23 A;  2AO2 A;  2QR4 A;  2PO4 A;  2AZE A;  4KS9 A;  1K93 A;  2EBF X;  1Y0V A;  2VF1 A;  4HKS A;  3Q22 A;  3VKG A;  3CE2 A;  3KML A;  1XFZ A;  4G97 A;  3Q24 A;  1K8T A;  3N0R A;  1K90 A;  4F0X A;  5GJV E;  3X29 A;  5GJW E;  4AKG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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