2LFWA

Nmr structure of the phyrsl-nepr complex from sphingomonas sp. fr1
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
157
structure length
157
Chain Sequence
b'MSLGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRDVDPRLGLYRMFQGIWASANADGEAQTSQSDAEGTEAVARARLARMTPLSRQALLLTAMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRALELVPRGSHHHHHH'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords PhyR sigma-like domain
publication title Structural basis for sigma factor mimicry in the general stress response of Alphaproteobacteria.
pubmed doi rcsb
source organism Sphingomonas sp. fr1
molecule tags Signaling protein
total genus 44
structure length 157
sequence length 157
ec nomenclature
pdb deposition date 2011-07-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.140.160 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A; domain 3 2lfwA01
4QICA 1RP3A 1SC5A 4G97A 3N0RA 2LFWA
chains in the Genus database with same CATH superfamily
3LG1A 2Q8GA 5B5VA 1PK0A 4ZYJA 1W07A 2R0MA 4JIOA 5J6AA 3Q23A 4H81A 3NF4A 3MPIA 3D1IA 4Q0TA 4F0XA 1GKZA 2ZDYA 4J1VA 4LQQB 2PG0A 2YYLA 3MMOA 1T9GA 2QR4A 1GJVA 3D6BA 3HWCA 3C2PA 2REHA 4Q1OA 2BU8A 2XS1A 4KSAA 5K3IA 5K3JA 3C46A 1XFWA 3BNFA 2JBTA 4OO2A 4Q17A 2CJ8A 1IVHA 2YYJA 2YYGA 2Q8FA 3D9EA 4HR3A 1FS7A 1RX0A 4P13A 1FS9A 4NXLA 2AO2A 2CJ7A 1EGCA 2PO4A 3MDDA 4Q5BA 2OJQA 3B96A 1R3BA 4H7QA 1K8TA 4E01A 1XFZA 1RJ4A 3VKGA 3D9DA 1K93A 3MXLA 3UU9A 2JBRA 2BU7A 2D29A 2CJ4A 3LGQA 4O5MA 2Z1QA 2YYMA 4WJYA 2A1TA 2C12A 5J71A 3MDEA 3D9GA 3M9VA 4KTOA 4XVXA 3TZ0A 3CRLA 1BUCA 3BNGA 5GJVE 3TZ4A 2CJ6A 3VADA 1K90A 2GBBA 3EONA 3UBRA 4FF1A 4AKHA 3SCEA 2PNRA 5M4KA 3AFEA 1FS8A 2C0UA 3MKHA 4W9UA 5K3HA 1XG2B 3FO3A 4N5FA 3GM6A 1SK6A 2CX9A 1RJ1A 2IX6A 2OEVA 4G97A 2AZEA 1X91A 2XS8A 3TORA 2BU5A 1S26A 2DVLA 2ZDXA 2F6LA 2RDZA 1U8VA 4QICA 3Q22A 4KS9A 4V25A 1Y8OA 1QDBA 3PFDA 4H85A 3BNHA 4L1FA 5BRMA 5BRKA 3GNCA 4L3XA 2OR0A 4FF2A 4U83A 1SIQA 4ZXVA 2Q8IA 2E0AA 2R05A 4MP2A 4IV6A 3X29A 1XFVA 3EOMA 4DOYA 1SC5A 3N0RA 3L1TA 3P4TA 3II9A 4P79A 3S7WA 4E00A 4JEKA 2OT4A 3CRKA 1Y0VA 1GU6A 3KMLA 4X28A 4HKSA 4HKRA 5GJWE 1R2JA 2YGWA 2ZAFA 4AKGA 2VF1A 3R7KA 5M4NA 1GKXA 3BNJA 4M9AA 4Q5CA 3C3LA 1XFUA 2LFWA 2ZKJA 3GQTA 4JIZA 5B6BA 2BU6A 2Q8HA 1UKWA 2JBSA 1RP3A 2E81A 1WS9A 1X90A 5K3GA 4V26A 2JIFA 1IS2A 3CE2A 2R03A 4KSFA 1Y8NA 2EBHX 1Y8PA 4MPEA 2EBFX 2FP1A 2R0NA 4FF4A 4AI6A 1XFYA 2J7AA 3OWMA 4MPNA 2FP2A 3FCJA 2E80A 1X8ZA 3RKHA 4FZ4A 3F29A 4L3YA 2BTZA 2DDHA 3SWOA 2EC5A 3X0XA 3TZ2A 2UXWA 2RFQA 3MPJA 1EGEA 3TZ5A 3D2RA 2ZO5A 2VR0A 4IRNA 4RM7A 4KCFA 3AFFA 3TTBA 1LVCA 2VIGA 2OEXA 3X0YA 4DZYA 4FF3A 1JQIA 1UDYA 4L3ZA 2EBAA 2YYIA 1XFXA 4X28C 3Q24A 4L38A 1EGDA 2RF7A 1OAHA 3D9FA 2WBIA 5M4PA 2HJNA 2IX5A 2XQRB 4LQSB 4MP7A 1JM6A 4MPCA 3Q0AA 1SIRA 5B5WA 3SF6A 3SXQA 4E02A 4AKIA 3VKHA 3OIBA 2FONA 2CJ5A 2R02A 5M4MA 4G5EA 2YYKA 4Q4UA 2BU2A 3OWAA 1PI1A
chains in the Genus database with same CATH topology
1K93A 4FF4A 1PK0A 1XFYA 3X29A 1XFVA 3Q23A 2FP2A 1SC5A 3N0RA 4FZ4A 4F0XA 4P79A 2EC5A 2QR4A 3C2PA 4AI6A 1Y0VA 3KMLA 5GJVE 4HKSA 4HKRA 1K90A 2GBBA 1LVCA 4KSAA 5GJWE 4FF1A 4FF3A 4AKHA 2YGWA 4AKGA 2VF1A 1XFXA 3C46A 1XFWA 1SK6A 4G97A 3Q24A 3C3LA 1XFUA 2AZEA 2LFWA 3Q0AA 1S26A 2F6LA 4QICA 3Q22A 4KS9A 1RP3A 2AO2A 2PO4A 2EBHX 4AKIA 3VKHA 3CE2A 4FF2A 4KSFA 1K8TA 1XFZA 3VKGA 2EBFX 2FP1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QIC A;  1RP3 A;  1SC5 A;  4G97 A;  3N0R A;  2LFW A; 
#chains in the Genus database with same CATH topology
 3LG1 A;  2Q8G A;  5B5V A;  1PK0 A;  4ZYJ A;  1W07 A;  2R0M A;  4JIO A;  5J6A A;  3Q23 A;  4H81 A;  3NF4 A;  3MPI A;  3D1I A;  4Q0T A;  4F0X A;  1GKZ A;  2ZDY A;  4J1V A;  4LQQ B;  2PG0 A;  2YYL A;  3MMO A;  1T9G A;  2QR4 A;  1GJV A;  3D6B A;  3HWC A;  3C2P A;  2REH A;  4Q1O A;  2BU8 A;  2XS1 A;  4KSA A;  5K3I A;  5K3J A;  3C46 A;  1XFW A;  3BNF A;  2JBT A;  4OO2 A;  4Q17 A;  2CJ8 A;  1IVH A;  2YYJ A;  2YYG A;  2Q8F A;  3D9E A;  4HR3 A;  1FS7 A;  1RX0 A;  4P13 A;  1FS9 A;  4NXL A;  2AO2 A;  2CJ7 A;  1EGC A;  2PO4 A;  3MDD A;  4Q5B A;  2OJQ A;  3B96 A;  1R3B A;  4H7Q A;  1K8T A;  4E01 A;  1XFZ A;  1RJ4 A;  3VKG A;  3D9D A;  1K93 A;  3MXL A;  3UU9 A;  2JBR A;  2BU7 A;  2D29 A;  2CJ4 A;  3LGQ A;  4O5M A;  2Z1Q A;  2YYM A;  4WJY A;  2A1T A;  2C12 A;  5J71 A;  3MDE A;  3D9G A;  3M9V A;  4KTO A;  4XVX A;  3TZ0 A;  3CRL A;  1BUC A;  3BNG A;  5GJV E;  3TZ4 A;  2CJ6 A;  3VAD A;  1K90 A;  2GBB A;  3EON A;  3UBR A;  4FF1 A;  4AKH A;  3SCE A;  2PNR A;  5M4K A;  3AFE A;  1FS8 A;  2C0U A;  3MKH A;  4W9U A;  5K3H A;  1XG2 B;  3FO3 A;  4N5F A;  3GM6 A;  1SK6 A;  2CX9 A;  1RJ1 A;  2IX6 A;  2OEV A;  4G97 A;  2AZE A;  1X91 A;  2XS8 A;  3TOR A;  2BU5 A;  1S26 A;  2DVL A;  2ZDX A;  2F6L A;  2RDZ A;  1U8V A;  4QIC A;  3Q22 A;  4KS9 A;  4V25 A;  1Y8O A;  1QDB A;  3PFD A;  4H85 A;  3BNH A;  4L1F A;  5BRM A;  5BRK A;  3GNC A;  4L3X A;  2OR0 A;  4FF2 A;  4U83 A;  1SIQ A;  4ZXV A;  2Q8I A;  2E0A A;  2R05 A;  4MP2 A;  4IV6 A;  3X29 A;  1XFV A;  3EOM A;  4DOY A;  1SC5 A;  3N0R A;  3L1T A;  3P4T A;  3II9 A;  4P79 A;  3S7W A;  4E00 A;  4JEK A;  2OT4 A;  3CRK A;  1Y0V A;  1GU6 A;  3KML A;  4X28 A;  4HKS A;  4HKR A;  5GJW E;  1R2J A;  2YGW A;  2ZAF A;  4AKG A;  2VF1 A;  3R7K A;  5M4N A;  1GKX A;  3BNJ A;  4M9A A;  4Q5C A;  3C3L A;  1XFU A;  2LFW A;  2ZKJ A;  3GQT A;  4JIZ A;  5B6B A;  2BU6 A;  2Q8H A;  1UKW A;  2JBS A;  1RP3 A;  2E81 A;  1WS9 A;  1X90 A;  5K3G A;  4V26 A;  2JIF A;  1IS2 A;  3CE2 A;  2R03 A;  4KSF A;  1Y8N A;  2EBH X;  1Y8P A;  4MPE A;  2EBF X;  2FP1 A;  2R0N A;  4FF4 A;  4AI6 A;  1XFY A;  2J7A A;  3OWM A;  4MPN A;  2FP2 A;  3FCJ A;  2E80 A;  1X8Z A;  3RKH A;  4FZ4 A;  3F29 A;  4L3Y A;  2BTZ A;  2DDH A;  3SWO A;  2EC5 A;  3X0X A;  3TZ2 A;  2UXW A;  2RFQ A;  3MPJ A;  1EGE A;  3TZ5 A;  3D2R A;  2ZO5 A;  2VR0 A;  4IRN A;  4RM7 A;  4KCF A;  3AFF A;  3TTB A;  1LVC A;  2VIG A;  2OEX A;  3X0Y A;  4DZY A;  4FF3 A;  1JQI A;  1UDY A;  4L3Z A;  2EBA A;  2YYI A;  1XFX A;  4X28 C;  3Q24 A;  4L38 A;  1EGD A;  2RF7 A;  1OAH A;  3D9F A;  2WBI A;  5M4P A;  2HJN A;  2IX5 A;  2XQR B;  4LQS B;  4MP7 A;  1JM6 A;  4MPC A;  3Q0A A;  1SIR A;  5B5W A;  3SF6 A;  3SXQ A;  4E02 A;  4AKI A;  3VKH A;  3OIB A;  2FON A;  2CJ5 A;  2R02 A;  5M4M A;  4G5E A;  2YYK A;  4Q4U A;  2BU2 A;  3OWA A;  1PI1 A; 
#chains in the Genus database with same CATH homology
 1K93 A;  4FF4 A;  1PK0 A;  1XFY A;  3X29 A;  1XFV A;  3Q23 A;  2FP2 A;  1SC5 A;  3N0R A;  4FZ4 A;  4F0X A;  4P79 A;  2EC5 A;  2QR4 A;  3C2P A;  4AI6 A;  1Y0V A;  3KML A;  5GJV E;  4HKS A;  4HKR A;  1K90 A;  2GBB A;  1LVC A;  4KSA A;  5GJW E;  4FF1 A;  4FF3 A;  4AKH A;  2YGW A;  4AKG A;  2VF1 A;  1XFX A;  3C46 A;  1XFW A;  1SK6 A;  4G97 A;  3Q24 A;  3C3L A;  1XFU A;  2AZE A;  2LFW A;  3Q0A A;  1S26 A;  2F6L A;  4QIC A;  3Q22 A;  4KS9 A;  1RP3 A;  2AO2 A;  2PO4 A;  2EBH X;  4AKI A;  3VKH A;  3CE2 A;  4FF2 A;  4KSF A;  1K8T A;  1XFZ A;  3VKG A;  2EBF X;  2FP1 A; 
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similar chains in the Genus database (?% sequence similarity)
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