2LGRA

Solution structure of human protein c6orf130, a putative macro domain
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
152
structure length
152
Chain Sequence
EASSLNEDPEGSRITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKFGGVQELLNQQKKSGEVAVLKRDGRYIYYLITKKRASHKPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEATDIKITVYTL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Homo sapiens
publication title Orphan Macrodomain Protein (Human C6orf130) Is an O-Acyl-ADP-ribose Deacylase: SOLUTION STRUCTURE AND CATALYTIC PROPERTIES.
pubmed doi rcsb
molecule keywords Uncharacterized protein C6orf130
total genus 41
structure length 152
sequence length 152
ec nomenclature
pdb deposition date 2011-08-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 2lgrA01
4ZI6A 5FSZA 4J5SA 3Q6ZA 2LGRA 2BFRA 3EJGA 4JLLA 4ABLA 3EWOA 4R6TA 4ZY1A 3EKEA 3KQXA 4GVVA 1LAMA 4KYBA 1LAPA 5FSYA 3VFQA 3JRUA 4J5RA 2J9AA 3KR4A 2AFCA 4R7MA 3SIGA 4TU0A 3IJ3A 4ZX8A 3IIFA 3SIIA 4JCAA 4ETJA 3JZTA 3H8FA 3H8EA 3KR5A 2FAVA 3EWPA 4J5QA 4K3NA 5FSUA 1YD9A 3EJFA 4X2TA 4ABKA 1NJRA 5D8NA 5HOLA 4UMLA 3GQEA 4ESSA 4ZY0A 2L8RA 5FSVA 4GVWA 3GPQA 3EWQA 2ACFA 4R76A 2XD7A 1VHUA 1SPVA 5CMSA 3PEIA 3V45A 3GQOA 1HJZA 2EWBA 1GYTA 1ZR5A 5CB5A 3H8GA 4GUAA 1BPMA 4J4ZA 4ZYQA 4KSIA 3SIHA 3EW5A 1BLLE 1TXZA 3SIJA 2FXKA 3GPOA 3T8WA 1TY8A 4D86A 4JGKA 2X47A 3Q71A 5CBMA 5E3BA 4ZY2A 1ZR3A 1LANA 2FG1A 3KQZA 1BPNA 5CB3A 5HIHA 3KZWA 3IIDA 5FSXA 2VRIA 4ETKA 4K0CA 3V2BA 4JVVA 4IQYA 1LCPA 2EEEA 5DUSA 2BFQA 3GPGA 4ZX9A 2DX6A 3EWRA 3ETIA 5AILA
chains in the Genus database with same CATH superfamily
4ZI6A 5FSZA 4J5SA 3Q6ZA 2LGRA 2BFRA 3EJGA 4JLLA 4ABLA 3EWOA 4R6TA 4ZY1A 3EKEA 3KQXA 4GVVA 1LAMA 4KYBA 1LAPA 5FSYA 3VFQA 3JRUA 4J5RA 2J9AA 3KR4A 2AFCA 2JZDA 4R7MA 3SIGA 4TU0A 2JZEA 3IJ3A 4ZX8A 3IIFA 3SIIA 4JCAA 4ETJA 3JZTA 3H8FA 3H8EA 3KR5A 2FAVA 3EWPA 4J5QA 4K3NA 5FSUA 1YD9A 3EJFA 4X2TA 4ABKA 1NJRA 5D8NA 5HOLA 4UMLA 3GQEA 4ESSA 4ZY0A 2L8RA 5FSVA 4GVWA 3GPQA 3EWQA 2ACFA 4R76A 2XD7A 1VHUA 1SPVA 5CMSA 3PEIA 3V45A 3GQOA 1HJZA 2EWBA 1GYTA 1ZR5A 5CB5A 3H8GA 4GUAA 1BPMA 4J4ZA 4ZYQA 4KSIA 3SIHA 3EW5A 1BLLE 1TXZA 3SIJA 2RNKA 2FXKA 2KQVA 3GPOA 3T8WA 1TY8A 4D86A 4JGKA 2X47A 3Q71A 5CBMA 5E3BA 4ZY2A 2W2GA 1ZR3A 1LANA 2FG1A 3KQZA 1BPNA 5CB3A 5HIHA 3KZWA 3IIDA 2JZFA 5FSXA 2VRIA 4ETKA 4K0CA 2WCTA 4JVVA 3V2BA 4IQYA 1LCPA 2EEEA 5DUSA 2BFQA 3GPGA 4ZX9A 2DX6A 3EWRA 3ETIA 5AILA
chains in the Genus database with same CATH topology
4ZI6A 5FSZA 4J5SA 3Q6ZA 2LGRA 2BFRA 3EJGA 4JLLA 4ABLA 3EWOA 4R6TA 4ZY1A 3EKEA 3KQXA 4GVVA 1LAMA 4KYBA 1LAPA 5FSYA 3VFQA 3JRUA 4J5RA 2J9AA 3KR4A 2AFCA 4R7MA 3SIGA 4TU0A 3IJ3A 4ZX8A 3IIFA 3SIIA 4JCAA 4ETJA 3JZTA 3H8FA 3H8EA 3KR5A 2FAVA 3EWPA 4J5QA 4K3NA 5FSUA 1YD9A 3EJFA 4X2TA 4ABKA 1NJRA 5D8NA 5HOLA 4UMLA 3GQEA 4ESSA 4ZY0A 2L8RA 5FSVA 4GVWA 3GPQA 3EWQA 2ACFA 4R76A 2XD7A 1VHUA 1SPVA 5CMSA 3PEIA 3V45A 3GQOA 1HJZA 2EWBA 1GYTA 1ZR5A 5CB5A 3H8GA 4GUAA 1BPMA 4J4ZA 4ZYQA 4KSIA 3SIHA 3EW5A 1BLLE 1TXZA 3SIJA 2FXKA 3GPOA 3T8WA 1TY8A 4D86A 4JGKA 2X47A 3Q71A 5CBMA 5E3BA 4ZY2A 1ZR3A 1LANA 2FG1A 3KQZA 1BPNA 5CB3A 5HIHA 3KZWA 3IIDA 5FSXA 2VRIA 4ETKA 4K0CA 3V2BA 4JVVA 4IQYA 1LCPA 2EEEA 5DUSA 2BFQA 3GPGA 4ZX9A 2DX6A 3EWRA 3ETIA 5AILA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZI6 A;  5FSZ A;  4J5S A;  3Q6Z A;  2LGR A;  2BFR A;  3EJG A;  4JLL A;  4ABL A;  3EWO A;  4R6T A;  4ZY1 A;  3EKE A;  3KQX A;  4GVV A;  1LAM A;  4KYB A;  1LAP A;  5FSY A;  3VFQ A;  3JRU A;  4J5R A;  2J9A A;  3KR4 A;  2AFC A;  4R7M A;  3SIG A;  4TU0 A;  3IJ3 A;  4ZX8 A;  3IIF A;  3SII A;  4JCA A;  4ETJ A;  3JZT A;  3H8F A;  3H8E A;  3KR5 A;  2FAV A;  3EWP A;  4J5Q A;  4K3N A;  5FSU A;  1YD9 A;  3EJF A;  4X2T A;  4ABK A;  1NJR A;  5D8N A;  5HOL A;  4UML A;  3GQE A;  4ESS A;  4ZY0 A;  2L8R A;  5FSV A;  4GVW A;  3GPQ A;  3EWQ A;  2ACF A;  4R76 A;  2XD7 A;  1VHU A;  1SPV A;  5CMS A;  3PEI A;  3V45 A;  3GQO A;  1HJZ A;  2EWB A;  1GYT A;  1ZR5 A;  5CB5 A;  3H8G A;  4GUA A;  1BPM A;  4J4Z A;  4ZYQ A;  4KSI A;  3SIH A;  3EW5 A;  1BLL E;  1TXZ A;  3SIJ A;  2FXK A;  3GPO A;  3T8W A;  1TY8 A;  4D86 A;  4JGK A;  2X47 A;  3Q71 A;  5CBM A;  5E3B A;  4ZY2 A;  1ZR3 A;  1LAN A;  2FG1 A;  3KQZ A;  1BPN A;  5CB3 A;  5HIH A;  3KZW A;  3IID A;  5FSX A;  2VRI A;  4ETK A;  4K0C A;  3V2B A;  4JVV A;  4IQY A;  1LCP A;  2EEE A;  5DUS A;  2BFQ A;  3GPG A;  4ZX9 A;  2DX6 A;  3EWR A;  3ETI A;  5AIL A; 
#chains in the Genus database with same CATH topology
 4ZI6 A;  5FSZ A;  4J5S A;  3Q6Z A;  2LGR A;  2BFR A;  3EJG A;  4JLL A;  4ABL A;  3EWO A;  4R6T A;  4ZY1 A;  3EKE A;  3KQX A;  4GVV A;  1LAM A;  4KYB A;  1LAP A;  5FSY A;  3VFQ A;  3JRU A;  4J5R A;  2J9A A;  3KR4 A;  2AFC A;  2JZD A;  4R7M A;  3SIG A;  4TU0 A;  2JZE A;  3IJ3 A;  4ZX8 A;  3IIF A;  3SII A;  4JCA A;  4ETJ A;  3JZT A;  3H8F A;  3H8E A;  3KR5 A;  2FAV A;  3EWP A;  4J5Q A;  4K3N A;  5FSU A;  1YD9 A;  3EJF A;  4X2T A;  4ABK A;  1NJR A;  5D8N A;  5HOL A;  4UML A;  3GQE A;  4ESS A;  4ZY0 A;  2L8R A;  5FSV A;  4GVW A;  3GPQ A;  3EWQ A;  2ACF A;  4R76 A;  2XD7 A;  1VHU A;  1SPV A;  5CMS A;  3PEI A;  3V45 A;  3GQO A;  1HJZ A;  2EWB A;  1GYT A;  1ZR5 A;  5CB5 A;  3H8G A;  4GUA A;  1BPM A;  4J4Z A;  4ZYQ A;  4KSI A;  3SIH A;  3EW5 A;  1BLL E;  1TXZ A;  3SIJ A;  2RNK A;  2FXK A;  2KQV A;  3GPO A;  3T8W A;  1TY8 A;  4D86 A;  4JGK A;  2X47 A;  3Q71 A;  5CBM A;  5E3B A;  4ZY2 A;  2W2G A;  1ZR3 A;  1LAN A;  2FG1 A;  3KQZ A;  1BPN A;  5CB3 A;  5HIH A;  3KZW A;  3IID A;  2JZF A;  5FSX A;  2VRI A;  4ETK A;  4K0C A;  2WCT A;  4JVV A;  3V2B A;  4IQY A;  1LCP A;  2EEE A;  5DUS A;  2BFQ A;  3GPG A;  4ZX9 A;  2DX6 A;  3EWR A;  3ETI A;  5AIL A; 
#chains in the Genus database with same CATH homology
 4ZI6 A;  5FSZ A;  4J5S A;  3Q6Z A;  2LGR A;  2BFR A;  3EJG A;  4JLL A;  4ABL A;  3EWO A;  4R6T A;  4ZY1 A;  3EKE A;  3KQX A;  4GVV A;  1LAM A;  4KYB A;  1LAP A;  5FSY A;  3VFQ A;  3JRU A;  4J5R A;  2J9A A;  3KR4 A;  2AFC A;  4R7M A;  3SIG A;  4TU0 A;  3IJ3 A;  4ZX8 A;  3IIF A;  3SII A;  4JCA A;  4ETJ A;  3JZT A;  3H8F A;  3H8E A;  3KR5 A;  2FAV A;  3EWP A;  4J5Q A;  4K3N A;  5FSU A;  1YD9 A;  3EJF A;  4X2T A;  4ABK A;  1NJR A;  5D8N A;  5HOL A;  4UML A;  3GQE A;  4ESS A;  4ZY0 A;  2L8R A;  5FSV A;  4GVW A;  3GPQ A;  3EWQ A;  2ACF A;  4R76 A;  2XD7 A;  1VHU A;  1SPV A;  5CMS A;  3PEI A;  3V45 A;  3GQO A;  1HJZ A;  2EWB A;  1GYT A;  1ZR5 A;  5CB5 A;  3H8G A;  4GUA A;  1BPM A;  4J4Z A;  4ZYQ A;  4KSI A;  3SIH A;  3EW5 A;  1BLL E;  1TXZ A;  3SIJ A;  2FXK A;  3GPO A;  3T8W A;  1TY8 A;  4D86 A;  4JGK A;  2X47 A;  3Q71 A;  5CBM A;  5E3B A;  4ZY2 A;  1ZR3 A;  1LAN A;  2FG1 A;  3KQZ A;  1BPN A;  5CB3 A;  5HIH A;  3KZW A;  3IID A;  5FSX A;  2VRI A;  4ETK A;  4K0C A;  3V2B A;  4JVV A;  4IQY A;  1LCP A;  2EEE A;  5DUS A;  2BFQ A;  3GPG A;  4ZX9 A;  2DX6 A;  3EWR A;  3ETI A;  5AIL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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