2LGTA

Backbone 1h, 13c, and 15n chemical shift assignments for qfm(y)f
Total Genus 31
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
144
structure length
144
Chain Sequence
MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINQFMYFCDNKFHTEALTALLSDLE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Translation
molecule keywords Eukaryotic peptide chain release factor subunit 1
publication title Selectivity of stop codon recognition in translation termination is modulated by multiple conformations of GTS loop in eRF1
pubmed doi rcsb
source organism Homo sapiens
total genus 31
structure length 144
sequence length 144
ec nomenclature
pdb deposition date 2011-08-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03463 eRF1_1 eRF1 domain 1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.960.10 Alpha Beta 2-Layer Sandwich Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A, domain 1 2lgtA00
2LGTA 3E1YA 2LLXA 3VMFB 3E20B 1DT9A 2MQ9A 2MQ6A 3AGKA
chains in the Genus database with same CATH superfamily
2LGTA 3E1YA 2LLXA 3VMFB 3E20B 1DT9A 2MQ9A 2MQ6A 3AGKA
chains in the Genus database with same CATH topology
2LGTA 3E1YA 2LLXA 3VMFB 3E20B 1DT9A 2MQ9A 2MQ6A 3AGKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LGT A;  3E1Y A;  2LLX A;  3VMF B;  3E20 B;  1DT9 A;  2MQ9 A;  2MQ6 A;  3AGK A; 
#chains in the Genus database with same CATH topology
 2LGT A;  3E1Y A;  2LLX A;  3VMF B;  3E20 B;  1DT9 A;  2MQ9 A;  2MQ6 A;  3AGK A; 
#chains in the Genus database with same CATH homology
 2LGT A;  3E1Y A;  2LLX A;  3VMF B;  3E20 B;  1DT9 A;  2MQ9 A;  2MQ6 A;  3AGK A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...