2LKFA

Leukocidin f (hlgb) from staphylococcus aureus
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
299
structure length
296
Chain Sequence
EGKITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVLKATGNINSGFVKPNPNDYDFSKLYWGAKYNVSISSQSNDSVNVVDYAPKNQNEEFQVQNTLGYTFGGDISISNGLLNGNTAFSETINYKQESYRTTLSRNTNYKNVGWGVEAHKIMNNGWGPYGRDSFHPTYGNELFLAGRQSSAYAGQNFIAQHQMPLLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDLYQIRWNGFYWAGANYKNFKTRTFKSTYEIDWENHKVKLLDTKETENNK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords LEUKOCIDIN F SUBUNIT
publication title Crystal structure of staphylococcal LukF delineates conformational changes accompanying formation of a transmembrane channel.
pubmed doi rcsb
source organism Staphylococcus aureus
total genus 77
structure length 296
sequence length 299
ec nomenclature
pdb deposition date 1998-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07968 Leukocidin Leukocidin/Hemolysin toxin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.240.10 Mainly Beta Distorted Sandwich Leukocidin-like Leukocidin/porin MspA 2lkfA00
4YHDA 4IDJA 4P1XA 3M4DA 4IYTA 3B07A 3ROHA 2QK7B 3M4EA 5K59A 4J0OA 4P1YB 2QK7A 4TW1B 4U6VA 2LKFA 4IYCA 3M2LA 2YGTA 3LKFA 4P1YA 4P24A 4TW1A 4I0NA 1LKFA 7AHLA 3O44A 3ANZA 5K59C 1PVLA 4P1XB 3M3RA 4H56A 3B07B 4IZLA 4Q7GA 4IYAA 1T5RA
chains in the Genus database with same CATH superfamily
4YHDA 4IDJA 4P1XA 3M4DA 4IYAA 4IYTA 3B07A 3ROHA 2QK7B 3M4EA 5K59A 4J0OA 4P1YB 2QK7A 4TW1B 4U6VA 2LKFA 4IYCA 3M2LA 2YGTA 3LKFA 4P1YA 4P24A 4TW1A 4I0NA 1LKFA 7AHLA 3O44A 3ANZA 5K59C 1PVLA 4P1XB 3M3RA 4H56A 3B07B 4IZLA 4Q7GA 1XEZA 1T5RA
chains in the Genus database with same CATH topology
4YHDA 4IDJA 4P1XA 3M4DA 4IYTA 3B07A 3ROHA 2QK7B 3M4EA 5K59A 4J0OA 4P1YB 2QK7A 4TW1B 4U6VA 2LKFA 4IYCA 3M2LA 2YGTA 3LKFA 4P1YA 4P24A 4TW1A 4I0NA 1LKFA 7AHLA 3O44A 3ANZA 5K59C 1PVLA 4P1XB 3M3RA 4H56A 3B07B 4IZLA 4Q7GA 4IYAA 1T5RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YHD A;  4IDJ A;  4P1X A;  3M4D A;  4IYT A;  3B07 A;  3ROH A;  2QK7 B;  3M4E A;  5K59 A;  4J0O A;  4P1Y B;  2QK7 A;  4TW1 B;  4U6V A;  2LKF A;  4IYC A;  3M2L A;  2YGT A;  3LKF A;  4P1Y A;  4P24 A;  4TW1 A;  4I0N A;  1LKF A;  7AHL A;  3O44 A;  3ANZ A;  5K59 C;  1PVL A;  4P1X B;  3M3R A;  4H56 A;  3B07 B;  4IZL A;  4Q7G A;  4IYA A;  1T5R A; 
#chains in the Genus database with same CATH topology
 4YHD A;  4IDJ A;  4P1X A;  3M4D A;  4IYA A;  4IYT A;  3B07 A;  3ROH A;  2QK7 B;  3M4E A;  5K59 A;  4J0O A;  4P1Y B;  2QK7 A;  4TW1 B;  4U6V A;  2LKF A;  4IYC A;  3M2L A;  2YGT A;  3LKF A;  4P1Y A;  4P24 A;  4TW1 A;  4I0N A;  1LKF A;  7AHL A;  3O44 A;  3ANZ A;  5K59 C;  1PVL A;  4P1X B;  3M3R A;  4H56 A;  3B07 B;  4IZL A;  4Q7G A;  1XEZ A;  1T5R A; 
#chains in the Genus database with same CATH homology
 4YHD A;  4IDJ A;  4P1X A;  3M4D A;  4IYT A;  3B07 A;  3ROH A;  2QK7 B;  3M4E A;  5K59 A;  4J0O A;  4P1Y B;  2QK7 A;  4TW1 B;  4U6V A;  2LKF A;  4IYC A;  3M2L A;  2YGT A;  3LKF A;  4P1Y A;  4P24 A;  4TW1 A;  4I0N A;  1LKF A;  7AHL A;  3O44 A;  3ANZ A;  5K59 C;  1PVL A;  4P1X B;  3M3R A;  4H56 A;  3B07 B;  4IZL A;  4Q7G A;  4IYA A;  1T5R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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