The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
22
|
sequence length |
81
|
structure length |
81
|
Chain Sequence |
GPLGSMNKFTDDEWNQLKQDFISGILENEQKDLVAKLTNSDPIMNQLDLLHKWLDRHRDMCEKWKSKEDILHKLNEQWNKD
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Cell adhesion
|
| molecule keywords |
Erythrocyte membrane protein 1 (PfEMP1)
|
| publication title |
Structural Analysis of the Plasmodium falciparum Erythrocyte Membrane Protein 1 (PfEMP1) Intracellular Domain Reveals a Conserved Interaction Epitope.
pubmed doi rcsb |
| source organism |
Plasmodium falciparum
|
| total genus |
22
|
| structure length |
81
|
| sequence length |
81
|
| ec nomenclature | |
| pdb deposition date | 2011-10-16 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | c-terminal domain of poly(a) binding protein | c-terminal domain of poly(a) binding protein |
#chains in the Genus database with same CATH superfamily 2LKL A; #chains in the Genus database with same CATH topology 4KXF B; 2LKL A; 3PKN A; 3KTP A; 2HH6 A; 3KUJ A; 2GHJ A; 2RQG B; 3PTH A; 3M92 A; 2X04 A; 2O4T A; 1IFW A; 3KUI A; 3KTR A; 2DYD A; 1NMR A; 1GYZ A; 2RQH B; 3KUT A; 1JH4 A; 1I2T A; 3KUR A; 2O3L A; 3NTW A; 1G9L A; 3KUS A; 1JGN A; 4IVE A; #chains in the Genus database with same CATH homology 4KXF B; 2LKL A; 3PKN A; 3KTP A; 2HH6 A; 3KUJ A; 2RQG B; 3PTH A; 3M92 A; 2X04 A; 2O4T A; 1IFW A; 3KUI A; 3KTR A; 2DYD A; 1NMR A; 2RQH B; 3KUT A; 1JH4 A; 1I2T A; 3KUR A; 2O3L A; 3NTW A; 1G9L A; 3KUS A; 1JGN A; 4IVE A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
