2LL4M

Haddock structure of tgmic4-a5/lacto-n-biose complex, based on noe-derived distance restraints
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
70
structure length
70
Chain Sequence
CVHTGNIGSKAQTIGEVKRASSLSECRARCQAEKECSHYTYNVKSGLCYPKRGKPQFYKYLGDMTGSRTC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell adhesion
molecule keywords Micronemal protein 4
publication title Galactose Recognition by the Apicomplexan Parasite Toxoplasma gondii.
pubmed doi rcsb
source organism Toxoplasma gondii
total genus 20
structure length 70
sequence length 70
ec nomenclature
pdb deposition date 2011-10-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 2ll4M00
2Y8RA 5EOKA 2J8LA 2LL4M 4APLA 4Z0FA 5CS3A 2Z8WA 5CT3A 4R1AA 3HMSA 3MKPA 1Z40A 3SRIA 4APMA 2J8JA 5CS1A 2QJ4A 5CP9A 2LL3A 5COEA 1NK1A 2YILA 4R1CA 4UV6A 2Z8VA 4R1BA 3SRJA 4DURA 1YXEA 4A5TS 2F83A 3SP8A 3HMTA 2Q8AA 2YIPA 3ZLEA 3HN4A 4UAOA 4R19A 4Z0DA 1GMNA 1HKYA 1GMOA 2K13X 3HMRA 5EODA 1GP9A 4IUAA 5CS5A 5CS9A 5I25A 4Z09A 2Q8BA 5CT1A 1W8KA 1W81A 5CSQA 3ZWZA 1I8NA 5CT2A 2QJ2A 2YIOA 4Z0EA 1BHTA 2X2ZA 2HGFA
chains in the Genus database with same CATH superfamily
2Y8RA 2KL5A 5EOKA 2J8LA 2LL4M 4APLA 4Z0FA 5CS3A 4YIZA 2Z8WA 5CT3A 4R1AA 3HMSA 3MKPA 1Z40A 3SRIA 4APMA 2J8JA 5CS1A 2QJ4A 5CP9A 2LL3A 5COEA 1NK1A 2YILA 4R1CA 4UV6A 2Z8VA 4R1BA 3SRJA 4DURA 1YXEA 4A5TS 2F83A 3SP8A 3HMTA 2Q8AA 2YIPA 3ZLEA 3HN4A 4UAOA 4R19A 4Z0DA 1GMNA 1HKYA 1GMOA 2K13X 3HMRA 5EODA 1GP9A 4IUAA 5CS5A 5CS9A 5I25A 4Z09A 2Q8BA 5CT1A 1W8KA 1W81A 5CSQA 3ZWZA 1I8NA 5CT2A 2QJ2A 2YIOA 4Z0EA 4YIVA 1BHTA 2X2ZA 2HGFA
chains in the Genus database with same CATH topology
2Y8RA 2KL5A 5EOKA 2J8LA 2LL4M 4APLA 4Z0FA 5CS3A 4YIZA 2Z8WA 5CT3A 4R1AA 3HMSA 3MKPA 1Z40A 3SRIA 4APMA 2J8JA 5CS1A 2QJ4A 5CP9A 2LL3A 5COEA 1NK1A 2YILA 4R1CA 4UV6A 2Z8VA 4R1BA 3SRJA 4DURA 1YXEA 4A5TS 2F83A 3SP8A 3HMTA 2Q8AA 2YIPA 3ZLEA 3HN4A 4UAOA 4R19A 4Z0DA 1GMNA 1HKYA 1GMOA 2K13X 3HMRA 5EODA 1GP9A 4IUAA 5CS5A 5CS9A 5I25A 4Z09A 2Q8BA 5CT1A 1W8KA 1W81A 5CSQA 3ZWZA 1I8NA 5CT2A 2QJ2A 2YIOA 4Z0EA 4YIVA 1BHTA 2X2ZA 2HGFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Y8R A;  5EOK A;  2J8L A;  2LL4 M;  4APL A;  4Z0F A;  5CS3 A;  2Z8W A;  5CT3 A;  4R1A A;  3HMS A;  3MKP A;  1Z40 A;  3SRI A;  4APM A;  2J8J A;  5CS1 A;  2QJ4 A;  5CP9 A;  2LL3 A;  5COE A;  1NK1 A;  2YIL A;  4R1C A;  4UV6 A;  2Z8V A;  4R1B A;  3SRJ A;  4DUR A;  1YXE A;  4A5T S;  2F83 A;  3SP8 A;  3HMT A;  2Q8A A;  2YIP A;  3ZLE A;  3HN4 A;  4UAO A;  4R19 A;  4Z0D A;  1GMN A;  1HKY A;  1GMO A;  2K13 X;  3HMR A;  5EOD A;  1GP9 A;  4IUA A;  5CS5 A;  5CS9 A;  5I25 A;  4Z09 A;  2Q8B A;  5CT1 A;  1W8K A;  1W81 A;  5CSQ A;  3ZWZ A;  1I8N A;  5CT2 A;  2QJ2 A;  2YIO A;  4Z0E A;  1BHT A;  2X2Z A;  2HGF A; 
#chains in the Genus database with same CATH topology
 2Y8R A;  2KL5 A;  5EOK A;  2J8L A;  2LL4 M;  4APL A;  4Z0F A;  5CS3 A;  4YIZ A;  2Z8W A;  5CT3 A;  4R1A A;  3HMS A;  3MKP A;  1Z40 A;  3SRI A;  4APM A;  2J8J A;  5CS1 A;  2QJ4 A;  5CP9 A;  2LL3 A;  5COE A;  1NK1 A;  2YIL A;  4R1C A;  4UV6 A;  2Z8V A;  4R1B A;  3SRJ A;  4DUR A;  1YXE A;  4A5T S;  2F83 A;  3SP8 A;  3HMT A;  2Q8A A;  2YIP A;  3ZLE A;  3HN4 A;  4UAO A;  4R19 A;  4Z0D A;  1GMN A;  1HKY A;  1GMO A;  2K13 X;  3HMR A;  5EOD A;  1GP9 A;  4IUA A;  5CS5 A;  5CS9 A;  5I25 A;  4Z09 A;  2Q8B A;  5CT1 A;  1W8K A;  1W81 A;  5CSQ A;  3ZWZ A;  1I8N A;  5CT2 A;  2QJ2 A;  2YIO A;  4Z0E A;  4YIV A;  1BHT A;  2X2Z A;  2HGF A; 
#chains in the Genus database with same CATH homology
 2Y8R A;  2KL5 A;  5EOK A;  2J8L A;  2LL4 M;  4APL A;  4Z0F A;  5CS3 A;  4YIZ A;  2Z8W A;  5CT3 A;  4R1A A;  3HMS A;  3MKP A;  1Z40 A;  3SRI A;  4APM A;  2J8J A;  5CS1 A;  2QJ4 A;  5CP9 A;  2LL3 A;  5COE A;  1NK1 A;  2YIL A;  4R1C A;  4UV6 A;  2Z8V A;  4R1B A;  3SRJ A;  4DUR A;  1YXE A;  4A5T S;  2F83 A;  3SP8 A;  3HMT A;  2Q8A A;  2YIP A;  3ZLE A;  3HN4 A;  4UAO A;  4R19 A;  4Z0D A;  1GMN A;  1HKY A;  1GMO A;  2K13 X;  3HMR A;  5EOD A;  1GP9 A;  4IUA A;  5CS5 A;  5CS9 A;  5I25 A;  4Z09 A;  2Q8B A;  5CT1 A;  1W8K A;  1W81 A;  5CSQ A;  3ZWZ A;  1I8N A;  5CT2 A;  2QJ2 A;  2YIO A;  4Z0E A;  4YIV A;  1BHT A;  2X2Z A;  2HGF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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