2LMLA

Solution nmr structure of holo acyl carrier protein from geobacter metallireducens refined with nh rdcs, northeast structural genomics consortium target gmr141
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
87
structure length
87
Chain Sequence
MPTLDALTPIFRQVFDDDSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALGELQKLKNVGDLADLVDKKLARKLEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords Putative acyl carrier protein
publication title Solution structure of 4'-phosphopantetheine - GmACP3 from Geobacter metallireducens: a specialized acyl carrier protein with atypical structural features and a putative role in lipopolysaccharide biosynthesis.
pubmed doi rcsb
source organism Geobacter metallireducens
total genus 26
structure length 87
sequence length 87
ec nomenclature
pdb deposition date 2011-12-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00550 PP-binding Phosphopantetheine attachment site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.10 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A ACP-like 2lmlA00
2MY5A 2ROQA 2EHTA 2AFEA 4H2XC 2KOOA 3LMOA 3GZMA 4BPFA 2CG5B 3EJEA 2K0YA 5HV8A 3RG2A 1DNYA 2GDWA 2K0XA 2LOLA 2MF4A 3GZLA 4BPHA 1AF8A 2CGQA 2KGEA 4HKGA 5KP8B 2JU1A 2MVVA 2L0QA 2LTEA 2N5IA 2LKIA 1HQBA 2FQ0A 2KOSA 2QNWA 2KOPA 2AF8A 2KW2A 2MR7A 2FVEA 2KGAA 4NEOA 2PNGA 2CNRA 2FACA 1L0IA 2GDYA 2MVUA 2FAEA 4BPGA 5KP6B 2L9FA 2XZ0D 1X3OA 1L0HA 2GDXA 2K92A 2FVAA 2KOQA 2N6YA 1F80D 4H2WC 2KG6A 2AFDA 2X2BA 4PWVB 2XZ1C 2FQ1A 1NQ4A 2JU2A 2KGCA 2FHSC 2FVFA 2LL8A 4PXHB 2DNWA 2N98A 2JGPA 4H2YC 1OR5A 5HVCA 1VKUA 2L4BA 2MR8A 2KR5A 2KG8A 1HY8A 2N50A 2KORA 1DV5A 2KWLA 3CE7A 3EJDA 2AVAA 4MRTC 4DG9A 2N6ZA 2M5RA 2N5HA 2MD9A 3EJBA 5EJDA 2L22A 5KP7B 4R0MA 2K94A 2LMLA 1ACPA 5CZDB 2JQ4A 2EHSA 1T8KA 2LPKA 2LIUA 2LIWA 2FQ2A 2FADA 2K2QA 4IZ6A 2VSQA 2KGDA 2KG9A 3NY7B 2K93A 4CA3A 1KLPA 2CQ8A
chains in the Genus database with same CATH superfamily
2ROQA 1VQ4P 3G1GA 2KOOA 4GR2A 4BPFA 2LF4A 2XXMA 1M1KQ 2K0YA 1QRJA 3B4QA 4QKOA 2N5IA 5HGNA 1HQBA 3LRYA 3CC4P 2MR7A 4COCA 2KGAA 2PNGA 1ZMBA 2FACA 3I55P 3E2DA 2VLOA 4BPGA 1IMQA 2N6YA 4H2WC 2KG6A 2JB0A 1YHQP 2AFDA 7CEIA 3H0DA 1VHNA 1YJ9P 3CXCO 4U0AA 2FQ1A 3CCUP 2KGCA 2PENA 2JAZA 3NTEA 4PH0A 3CCEP 1FR2A 1EOQA 3GKLC 2E1MA 3CMEP 2KORA 2KODA 3EJDA 4MRTC 2K0DX 2N6ZA 4DG9A 2GZJA 3CC7P 2BHVA 2K94A 3GJNA 1M6EX 1IMPA 3CD6P 4XFYA 2LIWA 4XRQA 2VSQA 1K9MQ 1JJ2O 2KG9A 3B5IA 2CQ8A 2EHTA 3CCLP 4H2XC 2PEMA 3LMOA 3CCQP 1MZ8A 1M74A 3GZMA 1KC8Q 1K8AQ 3RG2A 2GDWA 1YITP 2K0XA 4BPHA 3GZLA 1AF8A 3HZQA 1E0HA 2L0QA 4U0DA 2QEXP 2KOQA 2Z44A 2OTLP 4U0BA 1Z6MA 3CCMP 1VQ5P 2GZIA 2Z45A 2DNWA 3CPWO 2BUOA 4H2YC 2GZGA 1OR5A 5HVCA 1VKUA 1W2BO 2KR5A 2KG8A 3VRLC 4U0EA 2AVAA 3G71P 3WBHA 2N5HA 2PEOA 1YIJP 3OW2O 1BXIA 1S72P 4XFXA 3EJBA 4F37A 5EJDA 5F2KA 3CCJP 1VQ6P 1AUMA 2LMLA 3U43A 2NO8A 1ACPA 2JQ4A 1T8KA 3DTJA 3H47A 1CEIA 4COPA 1VQMP 1YJNP 2LIUA 1K73Q 2K2QA 2VLNA 3HYBA 1KLPA 2AFEA 4U0FA 4UHPB 1VQ7P 5EW5E 1UNKA 1IUQA 4IPYA 1EMVA 1DNYA 2LOLA 2MF4A 3M1MA 2KGEA 2Z46A 2JU1A 1RO0A 5I4TG 3RG6C 3G29A 2FQ0A 1M90Q 2PEJA 5BS2A 4WYMA 1L0IA 2L6EA 1GXHA 3G1IA 5KP6B 2OTJP 2L9FA 2XZ0D 1X3OA 3I56P 2GDXA 2K92A 2FVAA 1N8RQ 1QVFO 3CCSP 2X2BA 4PWVB 3G6EP 1NQ4A 5HGMA 4PXHB 5HGLA 2N98A 4XFZA 2JGPA 1Q7YQ 1UJZA 3DS1A 2PEQA 2L4BA 2ONTA 2MR8A 2EIAA 1DV5A 2KWLA 3CE7A 2MD9A 3DS2A 1KQSO 2L22A 1VQ9P 5KP7B 1D1DA 4R0MA 5CZDB 2LPKA 2WPTA 3DS4A 4PH1A 1BAJA 2FQ2A 2JO0A 2FADA 5F2OA 2KGDA 4CA3A 3NY7B 3G21A 2MY5A 2VLQA 4M0IA 2OARA 3DS5A 2EG5A 2XV6A 2EFJA 2CG5B 3EJEA 1RNIA 1QVGO 1GXGA 1ZNVA 2K5XA 5HV8A 5DCKA 1AYIA 2CGQA 2DGYA 3DS3A 4HKGA 5KP8B 1YI2P 2GZEA 2MVVA 1A8OA 2LTEA 1VQOP 2LKIA 2M8PA 2KOSA 2QNWA 2KOPA 2JBGA 2KW2A 2FVEA 3P05A 4NEOA 3Q20A 2CNRA 4XROA 1YJWP 1E6JP 2GDYA 2MVUA 2FAEA 5HGOA 2JYGA 1Q86Q 2PEKA 4GR6A 1L0HA 1K30A 2CWOA 3H4EA 1F80D 1GPJA 5BS1A 2XZ1C 4U0CA 3DS0A 2JU2A 1EIAA 2FHSC 2FVFA 1RO2A 2LL8A 2PY8A 1VQPP 3G4SP 1VQ8P 3CCRP 4QNBA 3CMAP 1VQLP 2VLPA 3CC2P 3DPHA 2M8LA 1VQNP 2ERHA 5F2NA 5JPAA 1HY8A 2N50A 3MGEA 2M5RA 1Q82Q 2GYKA 1NJIQ 1KD1Q 1Q81Q 2EHSA 1M6NA 2GZFA 2JYLA 3G0VA 1VQKP 2P9XA 3G28A 2QA4P 2XT1A 2M8NA 4IZ6A 2AF8A 2K93A 3G26A 1A43A 3CCVP 2PEIA
chains in the Genus database with same CATH topology
2MY5A 2ROQA 2EHTA 2AFEA 4H2XC 2KOOA 3LMOA 3GZMA 4BPFA 2CG5B 3EJEA 2K0YA 5HV8A 3RG2A 1DNYA 2GDWA 2K0XA 2LOLA 2MF4A 3GZLA 4BPHA 1AF8A 2CGQA 2KGEA 4HKGA 5KP8B 2JU1A 2MVVA 2L0QA 2LTEA 2N5IA 2LKIA 1HQBA 2FQ0A 2KOSA 2QNWA 2KOPA 2AF8A 2KW2A 2MR7A 2FVEA 2KGAA 4NEOA 2PNGA 2CNRA 2FACA 1L0IA 2GDYA 2MVUA 2FAEA 4BPGA 5KP6B 2L9FA 2XZ0D 1X3OA 1L0HA 2GDXA 2K92A 2FVAA 2KOQA 2N6YA 1F80D 4H2WC 2KG6A 2AFDA 2X2BA 4PWVB 2XZ1C 2FQ1A 1NQ4A 2JU2A 2KGCA 2FHSC 2FVFA 2LL8A 4PXHB 2DNWA 2N98A 2JGPA 4H2YC 1OR5A 5HVCA 1VKUA 2L4BA 2MR8A 2KR5A 2KG8A 1HY8A 2N50A 2KORA 1DV5A 2KWLA 3CE7A 3EJDA 2AVAA 4MRTC 4DG9A 2N6ZA 2M5RA 2N5HA 2MD9A 3EJBA 5EJDA 2L22A 5KP7B 4R0MA 2K94A 2LMLA 1ACPA 5CZDB 2JQ4A 2EHSA 1T8KA 2LPKA 2LIUA 2LIWA 2FQ2A 2FADA 2K2QA 4IZ6A 2VSQA 2KGDA 2KG9A 3NY7B 2K93A 4CA3A 1KLPA 2CQ8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MY5 A;  2ROQ A;  2EHT A;  2AFE A;  4H2X C;  2KOO A;  3LMO A;  3GZM A;  4BPF A;  2CG5 B;  3EJE A;  2K0Y A;  5HV8 A;  3RG2 A;  1DNY A;  2GDW A;  2K0X A;  2LOL A;  2MF4 A;  3GZL A;  4BPH A;  1AF8 A;  2CGQ A;  2KGE A;  4HKG A;  5KP8 B;  2JU1 A;  2MVV A;  2L0Q A;  2LTE A;  2N5I A;  2LKI A;  1HQB A;  2FQ0 A;  2KOS A;  2QNW A;  2KOP A;  2AF8 A;  2KW2 A;  2MR7 A;  2FVE A;  2KGA A;  4NEO A;  2PNG A;  2CNR A;  2FAC A;  1L0I A;  2GDY A;  2MVU A;  2FAE A;  4BPG A;  5KP6 B;  2L9F A;  2XZ0 D;  1X3O A;  1L0H A;  2GDX A;  2K92 A;  2FVA A;  2KOQ A;  2N6Y A;  1F80 D;  4H2W C;  2KG6 A;  2AFD A;  2X2B A;  4PWV B;  2XZ1 C;  2FQ1 A;  1NQ4 A;  2JU2 A;  2KGC A;  2FHS C;  2FVF A;  2LL8 A;  4PXH B;  2DNW A;  2N98 A;  2JGP A;  4H2Y C;  1OR5 A;  5HVC A;  1VKU A;  2L4B A;  2MR8 A;  2KR5 A;  2KG8 A;  1HY8 A;  2N50 A;  2KOR A;  1DV5 A;  2KWL A;  3CE7 A;  3EJD A;  2AVA A;  4MRT C;  4DG9 A;  2N6Z A;  2M5R A;  2N5H A;  2MD9 A;  3EJB A;  5EJD A;  2L22 A;  5KP7 B;  4R0M A;  2K94 A;  2LML A;  1ACP A;  5CZD B;  2JQ4 A;  2EHS A;  1T8K A;  2LPK A;  2LIU A;  2LIW A;  2FQ2 A;  2FAD A;  2K2Q A;  4IZ6 A;  2VSQ A;  2KGD A;  2KG9 A;  3NY7 B;  2K93 A;  4CA3 A;  1KLP A;  2CQ8 A; 
#chains in the Genus database with same CATH topology
 2ROQ A;  1VQ4 P;  3G1G A;  2KOO A;  4GR2 A;  4BPF A;  2LF4 A;  2XXM A;  1M1K Q;  2K0Y A;  1QRJ A;  3B4Q A;  4QKO A;  2N5I A;  5HGN A;  1HQB A;  3LRY A;  3CC4 P;  2MR7 A;  4COC A;  2KGA A;  2PNG A;  1ZMB A;  2FAC A;  3I55 P;  3E2D A;  2VLO A;  4BPG A;  1IMQ A;  2N6Y A;  4H2W C;  2KG6 A;  2JB0 A;  1YHQ P;  2AFD A;  7CEI A;  3H0D A;  1VHN A;  1YJ9 P;  3CXC O;  4U0A A;  2FQ1 A;  3CCU P;  2KGC A;  2PEN A;  2JAZ A;  3NTE A;  4PH0 A;  3CCE P;  1FR2 A;  1EOQ A;  3GKL C;  2E1M A;  3CME P;  2KOR A;  2KOD A;  3EJD A;  4MRT C;  2K0D X;  2N6Z A;  4DG9 A;  2GZJ A;  3CC7 P;  2BHV A;  2K94 A;  3GJN A;  1M6E X;  1IMP A;  3CD6 P;  4XFY A;  2LIW A;  4XRQ A;  2VSQ A;  1K9M Q;  1JJ2 O;  2KG9 A;  3B5I A;  2CQ8 A;  2EHT A;  3CCL P;  4H2X C;  2PEM A;  3LMO A;  3CCQ P;  1MZ8 A;  1M74 A;  3GZM A;  1KC8 Q;  1K8A Q;  3RG2 A;  2GDW A;  1YIT P;  2K0X A;  4BPH A;  3GZL A;  1AF8 A;  3HZQ A;  1E0H A;  2L0Q A;  4U0D A;  2QEX P;  2KOQ A;  2Z44 A;  2OTL P;  4U0B A;  1Z6M A;  3CCM P;  1VQ5 P;  2GZI A;  2Z45 A;  2DNW A;  3CPW O;  2BUO A;  4H2Y C;  2GZG A;  1OR5 A;  5HVC A;  1VKU A;  1W2B O;  2KR5 A;  2KG8 A;  3VRL C;  4U0E A;  2AVA A;  3G71 P;  3WBH A;  2N5H A;  2PEO A;  1YIJ P;  3OW2 O;  1BXI A;  1S72 P;  4XFX A;  3EJB A;  4F37 A;  5EJD A;  5F2K A;  3CCJ P;  1VQ6 P;  1AUM A;  2LML A;  3U43 A;  2NO8 A;  1ACP A;  2JQ4 A;  1T8K A;  3DTJ A;  3H47 A;  1CEI A;  4COP A;  1VQM P;  1YJN P;  2LIU A;  1K73 Q;  2K2Q A;  2VLN A;  3HYB A;  1KLP A;  2AFE A;  4U0F A;  4UHP B;  1VQ7 P;  5EW5 E;  1UNK A;  1IUQ A;  4IPY A;  1EMV A;  1DNY A;  2LOL A;  2MF4 A;  3M1M A;  2KGE A;  2Z46 A;  2JU1 A;  1RO0 A;  5I4T G;  3RG6 C;  3G29 A;  2FQ0 A;  1M90 Q;  2PEJ A;  5BS2 A;  4WYM A;  1L0I A;  2L6E A;  1GXH A;  3G1I A;  5KP6 B;  2OTJ P;  2L9F A;  2XZ0 D;  1X3O A;  3I56 P;  2GDX A;  2K92 A;  2FVA A;  1N8R Q;  1QVF O;  3CCS P;  2X2B A;  4PWV B;  3G6E P;  1NQ4 A;  5HGM A;  4PXH B;  5HGL A;  2N98 A;  4XFZ A;  2JGP A;  1Q7Y Q;  1UJZ A;  3DS1 A;  2PEQ A;  2L4B A;  2ONT A;  2MR8 A;  2EIA A;  1DV5 A;  2KWL A;  3CE7 A;  2MD9 A;  3DS2 A;  1KQS O;  2L22 A;  1VQ9 P;  5KP7 B;  1D1D A;  4R0M A;  5CZD B;  2LPK A;  2WPT A;  3DS4 A;  4PH1 A;  1BAJ A;  2FQ2 A;  2JO0 A;  2FAD A;  5F2O A;  2KGD A;  4CA3 A;  3NY7 B;  3G21 A;  2MY5 A;  2VLQ A;  4M0I A;  2OAR A;  3DS5 A;  2EG5 A;  2XV6 A;  2EFJ A;  2CG5 B;  3EJE A;  1RNI A;  1QVG O;  1GXG A;  1ZNV A;  2K5X A;  5HV8 A;  5DCK A;  1AYI A;  2CGQ A;  2DGY A;  3DS3 A;  4HKG A;  5KP8 B;  1YI2 P;  2GZE A;  2MVV A;  1A8O A;  2LTE A;  1VQO P;  2LKI A;  2M8P A;  2KOS A;  2QNW A;  2KOP A;  2JBG A;  2KW2 A;  2FVE A;  3P05 A;  4NEO A;  3Q20 A;  2CNR A;  4XRO A;  1YJW P;  1E6J P;  2GDY A;  2MVU A;  2FAE A;  5HGO A;  2JYG A;  1Q86 Q;  2PEK A;  4GR6 A;  1L0H A;  1K30 A;  2CWO A;  3H4E A;  1F80 D;  1GPJ A;  5BS1 A;  2XZ1 C;  4U0C A;  3DS0 A;  2JU2 A;  1EIA A;  2FHS C;  2FVF A;  1RO2 A;  2LL8 A;  2PY8 A;  1VQP P;  3G4S P;  1VQ8 P;  3CCR P;  4QNB A;  3CMA P;  1VQL P;  2VLP A;  3CC2 P;  3DPH A;  2M8L A;  1VQN P;  2ERH A;  5F2N A;  5JPA A;  1HY8 A;  2N50 A;  3MGE A;  2M5R A;  1Q82 Q;  2GYK A;  1NJI Q;  1KD1 Q;  1Q81 Q;  2EHS A;  1M6N A;  2GZF A;  2JYL A;  3G0V A;  1VQK P;  2P9X A;  3G28 A;  2QA4 P;  2XT1 A;  2M8N A;  4IZ6 A;  2AF8 A;  2K93 A;  3G26 A;  1A43 A;  3CCV P;  2PEI A; 
#chains in the Genus database with same CATH homology
 2MY5 A;  2ROQ A;  2EHT A;  2AFE A;  4H2X C;  2KOO A;  3LMO A;  3GZM A;  4BPF A;  2CG5 B;  3EJE A;  2K0Y A;  5HV8 A;  3RG2 A;  1DNY A;  2GDW A;  2K0X A;  2LOL A;  2MF4 A;  3GZL A;  4BPH A;  1AF8 A;  2CGQ A;  2KGE A;  4HKG A;  5KP8 B;  2JU1 A;  2MVV A;  2L0Q A;  2LTE A;  2N5I A;  2LKI A;  1HQB A;  2FQ0 A;  2KOS A;  2QNW A;  2KOP A;  2AF8 A;  2KW2 A;  2MR7 A;  2FVE A;  2KGA A;  4NEO A;  2PNG A;  2CNR A;  2FAC A;  1L0I A;  2GDY A;  2MVU A;  2FAE A;  4BPG A;  5KP6 B;  2L9F A;  2XZ0 D;  1X3O A;  1L0H A;  2GDX A;  2K92 A;  2FVA A;  2KOQ A;  2N6Y A;  1F80 D;  4H2W C;  2KG6 A;  2AFD A;  2X2B A;  4PWV B;  2XZ1 C;  2FQ1 A;  1NQ4 A;  2JU2 A;  2KGC A;  2FHS C;  2FVF A;  2LL8 A;  4PXH B;  2DNW A;  2N98 A;  2JGP A;  4H2Y C;  1OR5 A;  5HVC A;  1VKU A;  2L4B A;  2MR8 A;  2KR5 A;  2KG8 A;  1HY8 A;  2N50 A;  2KOR A;  1DV5 A;  2KWL A;  3CE7 A;  3EJD A;  2AVA A;  4MRT C;  4DG9 A;  2N6Z A;  2M5R A;  2N5H A;  2MD9 A;  3EJB A;  5EJD A;  2L22 A;  5KP7 B;  4R0M A;  2K94 A;  2LML A;  1ACP A;  5CZD B;  2JQ4 A;  2EHS A;  1T8K A;  2LPK A;  2LIU A;  2LIW A;  2FQ2 A;  2FAD A;  2K2Q A;  4IZ6 A;  2VSQ A;  2KGD A;  2KG9 A;  3NY7 B;  2K93 A;  4CA3 A;  1KLP A;  2CQ8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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