2LN3A

Solution nmr structure of de novo designed protein, if3-like fold, northeast structural genomics consortium target or135 (casd target)
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
83
structure length
83
Chain Sequence
MGLTRTITSQNKEELLEIALKFISQGLDLEVEFDSTDDKEIEEFERDMEDLAKKTGVQIQKQWQGNKLRIRLKGSLEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags De novo protein
molecule keywords DE NOVO DESIGNED PROTEIN OR135
publication title Principles for designing ideal protein structures.
pubmed doi rcsb
source organism Artificial gene
total genus 26
structure length 83
sequence length 83
ec nomenclature
pdb deposition date 2011-12-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.110.140 Alpha Beta 2-Layer Sandwich Translation Initiation Factor IF3 Translation Initiation Factor IF3 2ln3A00
2LN3A
chains in the Genus database with same CATH superfamily
2LXRA 1NJ1A 4YKEA 1Y2IA 1NJ5A 3LVKB 1UDVA 4Z9EA 2BKYX 2L8YA 4HVZA 3VTIA 2M71A 4FBQA 1H0XA 3ZIGA 1NJ2A 3TSUA 1XEZA 1JDQA 3TTDA 3ZIEA 3P04A 3IABB 4YDQA 1NH9A 1II7A 2A2YA 4OLFA 1TIGA 4Q15A 3TSPA 4NCXA 3WBMA 1H4QA 4K88A 1DCJA 1JO0A 1S8EA 2IFEA 1H0YA 2CRQA 4FCXA 3TTCA 3TSQA 3T1IA 3TTFA 1H4SA 2Q3VA 1H4TA 4HD0A 4HVCA 2LN3A 2Z7CA 3LVJC 3ZIHA 4EO0A 1VR4A 4FBWA 1VM0A 4WI1A 3DSDA 2EH1A 1JE3A 2P9BA 2GTCA 3U6YA 3IABA 2H9UA 4TWAA 1LN4A 2EK0A 3IALA 3VTHA 1NFHA 1NJ8A 1Y9XA 4NZRM 1NFJA 4FBKA 1HC7A 3QKBA 4K86A 1NJ6A 4NZTM 3TOEA 3ZIIA 3HZ7A 1PAVA 3DSCA 2Y1BA 1RQ8A 4K87A
chains in the Genus database with same CATH topology
3T1IA 3TTFA 3VTHA 4YKEA 4NZRM 4FBKA 3TSPA 2LN3A 3ZIHA 4EO0A 4HVZA 3VTIA 4FBWA 4FBQA 3P04A 3ZIGA 4NZTM 3ZIIA 3TSUA 2P9BA 1XEZA 3TTDA 4FCXA 3ZIEA 3TTCA 3TSQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LN3 A; 
#chains in the Genus database with same CATH topology
 2LXR A;  1NJ1 A;  4YKE A;  1Y2I A;  1NJ5 A;  3LVK B;  1UDV A;  4Z9E A;  2BKY X;  2L8Y A;  4HVZ A;  3VTI A;  2M71 A;  4FBQ A;  1H0X A;  3ZIG A;  1NJ2 A;  3TSU A;  1XEZ A;  1JDQ A;  3TTD A;  3ZIE A;  3P04 A;  3IAB B;  4YDQ A;  1NH9 A;  1II7 A;  2A2Y A;  4OLF A;  1TIG A;  4Q15 A;  3TSP A;  4NCX A;  3WBM A;  1H4Q A;  4K88 A;  1DCJ A;  1JO0 A;  1S8E A;  2IFE A;  1H0Y A;  2CRQ A;  4FCX A;  3TTC A;  3TSQ A;  3T1I A;  3TTF A;  1H4S A;  2Q3V A;  1H4T A;  4HD0 A;  4HVC A;  2LN3 A;  2Z7C A;  3LVJ C;  3ZIH A;  4EO0 A;  1VR4 A;  4FBW A;  1VM0 A;  4WI1 A;  3DSD A;  2EH1 A;  1JE3 A;  2P9B A;  2GTC A;  3U6Y A;  3IAB A;  2H9U A;  4TWA A;  1LN4 A;  2EK0 A;  3IAL A;  3VTH A;  1NFH A;  1NJ8 A;  1Y9X A;  4NZR M;  1NFJ A;  4FBK A;  1HC7 A;  3QKB A;  4K86 A;  1NJ6 A;  4NZT M;  3TOE A;  3ZII A;  3HZ7 A;  1PAV A;  3DSC A;  2Y1B A;  1RQ8 A;  4K87 A; 
#chains in the Genus database with same CATH homology
 3T1I A;  3TTF A;  3VTH A;  4YKE A;  4NZR M;  4FBK A;  3TSP A;  2LN3 A;  3ZIH A;  4EO0 A;  4HVZ A;  3VTI A;  4FBW A;  4FBQ A;  3P04 A;  3ZIG A;  4NZT M;  3ZII A;  3TSU A;  2P9B A;  1XEZ A;  3TTD A;  4FCX A;  3ZIE A;  3TTC A;  3TSQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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