2LOQA

Backbone structure of human membrane protein fam14b (interferon alpha-inducible protein 27-like protein 1)
Total Genus 15
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
104
structure length
104
Chain Sequence
MGKESGWDSGRAAVAAVVGGVVAVGTVLVALSAMGFTSVGIAASSIAAKMMSTAAIANGGGVAAGSLVAILQSVGAAGLSVTSKVIGGFAGTALGAWLGSPPSS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Membrane protein
molecule keywords Interferon alpha-inducible protein 27-like protein 1
publication title Facile backbone structure determination of human membrane proteins by NMR spectroscopy.
pubmed doi rcsb
source organism Homo sapiens
total genus 15
structure length 104
sequence length 104
ec nomenclature
pdb deposition date 2012-01-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF06140 Ifi-6-16 Interferon-induced 6-16 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.160 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 2loqA01
2LOQA
chains in the Genus database with same CATH superfamily
1LNSA 4L9KA 4GDLB 4GDXA 3FWBC 4DHXB 3V09A 4ZBQA 5ID7A 3CX9A 3FNMA 3KIKA 1HK4A 2BXKA 3FWCC 4N3ZA 4NAWB 2OT3A 5FUOA 4JK4A 4K71A 4LA0A 1UORA 4W4UB 4OT2A 4ZCGA 4BY9C 4F5VA 4GG2A 3GQXA 2LQIA 2EFHA 3M99C 1IJGA 2JUHA 5IJ5A 2BXPA 2LOQA 4J2VA 5HOZA 1KDXA 2E0YA 2LXSA 2ROHA 3TDLA 1BJ5A 1KW2A 4FJCB 1JNBA 5IJEA 2DBXA 1FOUA 2Z8KA 2LQHA 4C31B 2BXFA 1MIVA 2BXGA 2XVUA 2BXBA 2NQOA 4IW1A 3KJLA 3JRYA 4LUFA 4MBEC 2XW1A 3LU7A 1E7GA 4ZBKA 4G03A 5D7GA 3WHSA 2BX8A 2KBZA 4FK5B 3SIVB 2Z8IA 3NVMA 5GIOA 4OR0A 5GIPA 2QM6A 3MHSB 2BXHA 1BM0A 4G01A 1MM8A 1MUHA 3SQJA 2DYMA 4F5TA 4ZBRA 2BXNA 1J7EA 3B9MA 1E7FA 1E78A 2CKXA 3G9KD 2XMOA 4IW2A 4S1YA 2E0XA 5DBYA 5IIUA 2QHBA 1H9ZA 5IJFA 2V36A 5ID9A 3JQZA 1E7EA 4HGKA 4PO0A 4GDKB 1E7HA 1GNIA 1VFIA 1E7CA 1MIYA 1MA9A 2AJEA 4FIPB 2NNWA 5GINA 2LXTA 2AGHB 4HGMB 2XSIA 1VZSA 3GQUA 2BXMA 2BXQA 4LB9A 1HK3A 1HK1A 1LOTA 4G04A 1HK2A 2GUTA 1TF0A 2YDFA 1MUSA 3H3AA 3LU8A 1SB0A 3B9LA 5IFOA 1E7IA 1E7AA 4E99A 2BXDA 1O9XA 4I9OA 4EMXA 2Z8JA 5GHKA 1KXPD 4L9QA 4N0UD 3V03A 3WHQA 4F5UA 4ZC6A 3BPJA 3H37A 4K2CA 4F5SA 4Z69A 5B5TA 2BXAA 1HA2A 2EFDA 1J78A 3V08A 2KWFA 2DBWA 2DYOA 1H5WA 3GA9L 4ZUXV 2QMCA 3MHHB 2DBUA 2I2ZA 4M70B 4N0FD 4BKEA 3NMUA 3ICXA 4TQ0A 4WA6B 3W1SA 2XVVA 2VUFA 3UIVA 3NVKA 2OZBB 1E7BA 2DG5A 1HK5A 3ECPA 1GNJA 1BKEA 5BPKA 5IIHA 2BXEA 3WHRA 2XVQA 2XVWA 1AO6A 2EFCA 3A73A 2EFEA 2BXLA 4LB2A 4TQ1A 2I30A 3VQIA 4D7XA 3PLAA 2BXOA 3NVIA 2BXCA 2VDBA 4OTUA 5DQFA 2BXIA 4L8UA 4DM0A 1MIWA 1NT2B 5IIXA 4Z9OA 2K0NA 1TXUA 1N5UA 2VUEA 4OTTA 3SIUB 3LU6A 3A75A 4LUHA 2XW0A
chains in the Genus database with same CATH topology
1LNSA 4L9KA 4GDLB 4GDXA 3FWBC 4DHXB 3V09A 4ZBQA 5ID7A 3CX9A 3FNMA 3KIKA 1HK4A 2BXKA 3FWCC 4N3ZA 4NAWB 2OT3A 5FUOA 4JK4A 4K71A 4LA0A 1UORA 4W4UB 4OT2A 4ZCGA 4BY9C 4F5VA 4GG2A 3GQXA 2EFHA 3M99C 1IJGA 2JUHA 5IJ5A 2BXPA 2LOQA 4J2VA 5HOZA 2E0YA 2ROHA 3TDLA 1BJ5A 1KW2A 4FJCB 1JNBA 5IJEA 2DBXA 1FOUA 2Z8KA 4C31B 2BXFA 1MIVA 2BXGA 2XVUA 2BXBA 2NQOA 4IW1A 3KJLA 3JRYA 4LUFA 4MBEC 2XW1A 3LU7A 1E7GA 4ZBKA 4G03A 5D7GA 3WHSA 2BX8A 2KBZA 4FK5B 3SIVB 2Z8IA 3NVMA 5GIOA 4OR0A 5GIPA 2QM6A 3MHSB 2BXHA 1BM0A 4G01A 3SQJA 2DYMA 4F5TA 4ZBRA 2BXNA 1J7EA 3B9MA 1E7FA 1E78A 2CKXA 3G9KD 2XMOA 4IW2A 4S1YA 2E0XA 5DBYA 5IIUA 2QHBA 1H9ZA 5IJFA 2V36A 5ID9A 3JQZA 1E7EA 4HGKA 4PO0A 4GDKB 1E7HA 1GNIA 1VFIA 1E7CA 1MIYA 1MA9A 2AJEA 4FIPB 2NNWA 5GINA 4HGMB 2XSIA 1VZSA 3GQUA 2BXMA 2BXQA 4LB9A 1HK3A 1HK1A 1LOTA 4G04A 1HK2A 2YDFA 1TF0A 3H3AA 3LU8A 3B9LA 5IFOA 1E7IA 1E7AA 4E99A 2BXDA 1O9XA 4EMXA 2Z8JA 5GHKA 1KXPD 4L9QA 4N0UD 3V03A 3WHQA 4F5UA 4ZC6A 3H37A 4K2CA 4F5SA 4Z69A 5B5TA 2BXAA 1HA2A 2EFDA 1J78A 3V08A 2DBWA 2DYOA 1H5WA 3GA9L 4ZUXV 2QMCA 3MHHB 2DBUA 2I2ZA 4M70B 4N0FD 4BKEA 3NMUA 3ICXA 4TQ0A 4WA6B 3W1SA 2XVVA 2VUFA 3UIVA 3NVKA 2OZBB 1E7BA 2DG5A 1HK5A 1GNJA 1BKEA 5BPKA 5IIHA 2BXEA 3WHRA 2XVQA 2XVWA 1AO6A 2EFCA 3A73A 2EFEA 2BXLA 4LB2A 4TQ1A 2I30A 3VQIA 3PLAA 2BXOA 3NVIA 2BXCA 2VDBA 4OTUA 5DQFA 2BXIA 4L8UA 1MIWA 1NT2B 5IIXA 4Z9OA 2VUEA 1TXUA 1N5UA 4OTTA 3SIUB 3LU6A 3A75A 4LUHA 2XW0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LOQ A; 
#chains in the Genus database with same CATH topology
 1LNS A;  4L9K A;  4GDL B;  4GDX A;  3FWB C;  4DHX B;  3V09 A;  4ZBQ A;  5ID7 A;  3CX9 A;  3FNM A;  3KIK A;  1HK4 A;  2BXK A;  3FWC C;  4N3Z A;  4NAW B;  2OT3 A;  5FUO A;  4JK4 A;  4K71 A;  4LA0 A;  1UOR A;  4W4U B;  4OT2 A;  4ZCG A;  4BY9 C;  4F5V A;  4GG2 A;  3GQX A;  2LQI A;  2EFH A;  3M99 C;  1IJG A;  2JUH A;  5IJ5 A;  2BXP A;  2LOQ A;  4J2V A;  5HOZ A;  1KDX A;  2E0Y A;  2LXS A;  2ROH A;  3TDL A;  1BJ5 A;  1KW2 A;  4FJC B;  1JNB A;  5IJE A;  2DBX A;  1FOU A;  2Z8K A;  2LQH A;  4C31 B;  2BXF A;  1MIV A;  2BXG A;  2XVU A;  2BXB A;  2NQO A;  4IW1 A;  3KJL A;  3JRY A;  4LUF A;  4MBE C;  2XW1 A;  3LU7 A;  1E7G A;  4ZBK A;  4G03 A;  5D7G A;  3WHS A;  2BX8 A;  2KBZ A;  4FK5 B;  3SIV B;  2Z8I A;  3NVM A;  5GIO A;  4OR0 A;  5GIP A;  2QM6 A;  3MHS B;  2BXH A;  1BM0 A;  4G01 A;  1MM8 A;  1MUH A;  3SQJ A;  2DYM A;  4F5T A;  4ZBR A;  2BXN A;  1J7E A;  3B9M A;  1E7F A;  1E78 A;  2CKX A;  3G9K D;  2XMO A;  4IW2 A;  4S1Y A;  2E0X A;  5DBY A;  5IIU A;  2QHB A;  1H9Z A;  5IJF A;  2V36 A;  5ID9 A;  3JQZ A;  1E7E A;  4HGK A;  4PO0 A;  4GDK B;  1E7H A;  1GNI A;  1VFI A;  1E7C A;  1MIY A;  1MA9 A;  2AJE A;  4FIP B;  2NNW A;  5GIN A;  2LXT A;  2AGH B;  4HGM B;  2XSI A;  1VZS A;  3GQU A;  2BXM A;  2BXQ A;  4LB9 A;  1HK3 A;  1HK1 A;  1LOT A;  4G04 A;  1HK2 A;  2GUT A;  1TF0 A;  2YDF A;  1MUS A;  3H3A A;  3LU8 A;  1SB0 A;  3B9L A;  5IFO A;  1E7I A;  1E7A A;  4E99 A;  2BXD A;  1O9X A;  4I9O A;  4EMX A;  2Z8J A;  5GHK A;  1KXP D;  4L9Q A;  4N0U D;  3V03 A;  3WHQ A;  4F5U A;  4ZC6 A;  3BPJ A;  3H37 A;  4K2C A;  4F5S A;  4Z69 A;  5B5T A;  2BXA A;  1HA2 A;  2EFD A;  1J78 A;  3V08 A;  2KWF A;  2DBW A;  2DYO A;  1H5W A;  3GA9 L;  4ZUX V;  2QMC A;  3MHH B;  2DBU A;  2I2Z A;  4M70 B;  4N0F D;  4BKE A;  3NMU A;  3ICX A;  4TQ0 A;  4WA6 B;  3W1S A;  2XVV A;  2VUF A;  3UIV A;  3NVK A;  2OZB B;  1E7B A;  2DG5 A;  1HK5 A;  3ECP A;  1GNJ A;  1BKE A;  5BPK A;  5IIH A;  2BXE A;  3WHR A;  2XVQ A;  2XVW A;  1AO6 A;  2EFC A;  3A73 A;  2EFE A;  2BXL A;  4LB2 A;  4TQ1 A;  2I30 A;  3VQI A;  4D7X A;  3PLA A;  2BXO A;  3NVI A;  2BXC A;  2VDB A;  4OTU A;  5DQF A;  2BXI A;  4L8U A;  4DM0 A;  1MIW A;  1NT2 B;  5IIX A;  4Z9O A;  2K0N A;  1TXU A;  1N5U A;  2VUE A;  4OTT A;  3SIU B;  3LU6 A;  3A75 A;  4LUH A;  2XW0 A; 
#chains in the Genus database with same CATH homology
 1LNS A;  4L9K A;  4GDL B;  4GDX A;  3FWB C;  4DHX B;  3V09 A;  4ZBQ A;  5ID7 A;  3CX9 A;  3FNM A;  3KIK A;  1HK4 A;  2BXK A;  3FWC C;  4N3Z A;  4NAW B;  2OT3 A;  5FUO A;  4JK4 A;  4K71 A;  4LA0 A;  1UOR A;  4W4U B;  4OT2 A;  4ZCG A;  4BY9 C;  4F5V A;  4GG2 A;  3GQX A;  2EFH A;  3M99 C;  1IJG A;  2JUH A;  5IJ5 A;  2BXP A;  2LOQ A;  4J2V A;  5HOZ A;  2E0Y A;  2ROH A;  3TDL A;  1BJ5 A;  1KW2 A;  4FJC B;  1JNB A;  5IJE A;  2DBX A;  1FOU A;  2Z8K A;  4C31 B;  2BXF A;  1MIV A;  2BXG A;  2XVU A;  2BXB A;  2NQO A;  4IW1 A;  3KJL A;  3JRY A;  4LUF A;  4MBE C;  2XW1 A;  3LU7 A;  1E7G A;  4ZBK A;  4G03 A;  5D7G A;  3WHS A;  2BX8 A;  2KBZ A;  4FK5 B;  3SIV B;  2Z8I A;  3NVM A;  5GIO A;  4OR0 A;  5GIP A;  2QM6 A;  3MHS B;  2BXH A;  1BM0 A;  4G01 A;  3SQJ A;  2DYM A;  4F5T A;  4ZBR A;  2BXN A;  1J7E A;  3B9M A;  1E7F A;  1E78 A;  2CKX A;  3G9K D;  2XMO A;  4IW2 A;  4S1Y A;  2E0X A;  5DBY A;  5IIU A;  2QHB A;  1H9Z A;  5IJF A;  2V36 A;  5ID9 A;  3JQZ A;  1E7E A;  4HGK A;  4PO0 A;  4GDK B;  1E7H A;  1GNI A;  1VFI A;  1E7C A;  1MIY A;  1MA9 A;  2AJE A;  4FIP B;  2NNW A;  5GIN A;  4HGM B;  2XSI A;  1VZS A;  3GQU A;  2BXM A;  2BXQ A;  4LB9 A;  1HK3 A;  1HK1 A;  1LOT A;  4G04 A;  1HK2 A;  2YDF A;  1TF0 A;  3H3A A;  3LU8 A;  3B9L A;  5IFO A;  1E7I A;  1E7A A;  4E99 A;  2BXD A;  1O9X A;  4EMX A;  2Z8J A;  5GHK A;  1KXP D;  4L9Q A;  4N0U D;  3V03 A;  3WHQ A;  4F5U A;  4ZC6 A;  3H37 A;  4K2C A;  4F5S A;  4Z69 A;  5B5T A;  2BXA A;  1HA2 A;  2EFD A;  1J78 A;  3V08 A;  2DBW A;  2DYO A;  1H5W A;  3GA9 L;  4ZUX V;  2QMC A;  3MHH B;  2DBU A;  2I2Z A;  4M70 B;  4N0F D;  4BKE A;  3NMU A;  3ICX A;  4TQ0 A;  4WA6 B;  3W1S A;  2XVV A;  2VUF A;  3UIV A;  3NVK A;  2OZB B;  1E7B A;  2DG5 A;  1HK5 A;  1GNJ A;  1BKE A;  5BPK A;  5IIH A;  2BXE A;  3WHR A;  2XVQ A;  2XVW A;  1AO6 A;  2EFC A;  3A73 A;  2EFE A;  2BXL A;  4LB2 A;  4TQ1 A;  2I30 A;  3VQI A;  3PLA A;  2BXO A;  3NVI A;  2BXC A;  2VDB A;  4OTU A;  5DQF A;  2BXI A;  4L8U A;  1MIW A;  1NT2 B;  5IIX A;  4Z9O A;  2VUE A;  1TXU A;  1N5U A;  4OTT A;  3SIU B;  3LU6 A;  3A75 A;  4LUH A;  2XW0 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...