2LOQA

Backbone structure of human membrane protein fam14b (interferon alpha-inducible protein 27-like protein 1)
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
104
structure length
104
Chain Sequence
MGKESGWDSGRAAVAAVVGGVVAVGTVLVALSAMGFTSVGIAASSIAAKMMSTAAIANGGGVAAGSLVAILQSVGAAGLSVTSKVIGGFAGTALGAWLGSPPSS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords Interferon alpha-inducible protein 27-like protein 1
publication title Facile backbone structure determination of human membrane proteins by NMR spectroscopy.
pubmed doi rcsb
source organism Homo sapiens
total genus 15
structure length 104
sequence length 104
ec nomenclature
pdb deposition date 2012-01-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF06140 Ifi-6-16 Interferon-induced 6-16 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.160 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 2loqA01
2LOQA
chains in the Genus database with same CATH superfamily
1BKEA 1MIYA 2BXAA 4FIPB 4N3ZA 4JK4A 4PO0A 1KXPD 1HK2A 4ZBRA 3WHSA 3JQZA 1IJGA 2XVWA 4EMXA 2DBXA 4GDLB 2Z8JA 1HK1A 2DBWA 1GNIA 2BXOA 4LB2A 2BXNA 4HGKA 4S1YA 2BX8A 1VFIA 4IW2A 2BXEA 3TDLA 2DYOA 3V09A 1BJ5A 4TQ1A 1E7GA 2XW1A 4G04A 4N0UD 4DHXB 2BXFA 4E99A 1J78A 2QHBA 5GINA 3GQXA 2OZBB 1E7EA 2XSIA 4TQ0A 3V08A 2BXDA 2I2ZA 4ZC6A 1E7FA 2EFCA 1UORA 2CKXA 2QMCA 1MIVA 4GDXA 4HGMB 2EFEA 3SIUB 3KJLA 3ECPA 4ZBKA 1FOUA 2E0YA 2LOQA 2BXBA 2OT3A 4OTUA 2EFDA 4OR0A 2XW0A 2EFHA 3VQIA 1E7BA 2KWFA 3V03A 5HOZA 4Z69A 1TF0A 3BPJA 2V36A 3WHRA 5BPKA 1VZSA 4L9KA 1MA9A 2I30A 2KBZA 4LA0A 1HK4A 4GG2A 3JRYA 4LB9A 3UIVA 2BXIA 1H9ZA 3FNMA 4G01A 2K0NA 4LUHA 4F5UA 2BXPA 4J2VA 4G03A 3NVIA 2GUTA 1KW2A 2BXLA 5ID9A 5GHKA 2LQHA 1AO6A 2BXGA 1TXUA 2QM6A 2Z8IA 3NVMA 1N5UA 3B9MA 3MHHB 3KIKA 1HK3A 2Z8KA 2XMOA 4ZUXV 5FUOA 3FWBC 4OT2A 3PLAA 2LQIA 1E7IA 5ID7A 3A75A 2DBUA 3WHQA 2ROHA 4L8UA 3W1SA 3G9KD 4N0FD 2DG5A 4L9QA 1KDXA 5GIOA 1BM0A 2NNWA 5DBYA 1NT2B 4DM0A 3NMUA 5IJEA 2JUHA 4ZBQA 2XVVA 2XVQA 2NQOA 4F5SA 1HK5A 5GIPA 2VUFA 2DYMA 4D7XA 3ICXA 5IJFA 3GA9L 5DQFA 5IJ5A 2E0XA 3GQUA 3LU6A 1O9XA 1LOTA 1MM8A 3SQJA 2LXSA 1E7AA 3FWCC 4M70B 4BKEA 1MUHA 4OTTA 1J7EA 2VUEA 2AJEA 2BXKA 4Z9OA 4GDKB 2LXTA 3B9LA 4K71A 5IIHA 3SIVB 1E7HA 3LU8A 3M99C 5IFOA 4NAWB 1E7CA 4ZCGA 5IIUA 1GNJA 1MUSA 4FK5B 4K2CA 4BY9C 4F5VA 3H3AA 2BXHA 2BXCA 2VDBA 3A73A 3LU7A 4IW1A 4LUFA 1E78A 2AGHB 1LNSA 2BXQA 1JNBA 3CX9A 5IIXA 2BXMA 4C31B 1H5WA 1MIWA 2YDFA 1HA2A 3MHSB 2XVUA 4MBEC 4WA6B 4I9OA 5D7GA 5B5TA 4W4UB 3NVKA 3H37A 1SB0A 4F5TA 4FJCB
chains in the Genus database with same CATH topology
1BKEA 1MIYA 2BXAA 4FIPB 4N3ZA 4JK4A 4PO0A 1KXPD 1HK2A 4ZBRA 3WHSA 3JQZA 1IJGA 2XVWA 4EMXA 2DBXA 4GDLB 2Z8JA 1HK1A 2DBWA 1GNIA 2BXOA 4LB2A 2BXNA 4HGKA 4S1YA 2BX8A 1VFIA 4IW2A 2BXEA 3TDLA 2DYOA 3V09A 1BJ5A 4TQ1A 1E7GA 2XW1A 4G04A 4N0UD 4DHXB 2BXFA 4E99A 1J78A 2QHBA 5GINA 3GQXA 2OZBB 1E7EA 2XSIA 4TQ0A 3V08A 2BXDA 2I2ZA 4ZC6A 1E7FA 2EFCA 1UORA 2CKXA 2QMCA 1MIVA 4GDXA 4HGMB 2EFEA 3SIUB 3KJLA 4ZBKA 1FOUA 2E0YA 2LOQA 2BXBA 2OT3A 4OTUA 2EFDA 4OR0A 2XW0A 2EFHA 3VQIA 1E7BA 4Z69A 3V03A 5HOZA 1TF0A 2V36A 3WHRA 5BPKA 1VZSA 4L9KA 1MA9A 2I30A 2KBZA 4LA0A 1HK4A 4GG2A 3JRYA 4LB9A 3UIVA 2BXIA 1H9ZA 3FNMA 4G01A 4LUHA 4F5UA 2BXPA 4J2VA 4G03A 3NVIA 1KW2A 2BXLA 5ID9A 5GHKA 1AO6A 2BXGA 1TXUA 2QM6A 2Z8IA 3NVMA 1N5UA 3B9MA 3MHHB 3KIKA 1HK3A 2Z8KA 2XMOA 4ZUXV 5FUOA 3FWBC 4OT2A 3PLAA 1E7IA 5ID7A 3A75A 2DBUA 3WHQA 2ROHA 4L8UA 3W1SA 3G9KD 4N0FD 2DG5A 4L9QA 5GIOA 1BM0A 2NNWA 5DBYA 1NT2B 3NMUA 5IJEA 2JUHA 4ZBQA 2XVVA 2XVQA 2NQOA 4F5SA 1HK5A 5GIPA 2VUFA 2DYMA 3ICXA 5IJFA 3GA9L 5DQFA 5IJ5A 2E0XA 3GQUA 3LU6A 1O9XA 1LOTA 3SQJA 1E7AA 3FWCC 4M70B 4BKEA 4OTTA 1J7EA 2VUEA 2AJEA 2BXKA 4Z9OA 4GDKB 3B9LA 4K71A 5IIHA 3SIVB 1E7HA 3LU8A 3M99C 5IFOA 4NAWB 1E7CA 4ZCGA 5IIUA 1GNJA 4FK5B 4K2CA 4BY9C 4F5VA 3H3AA 2BXHA 2BXCA 2VDBA 3A73A 3LU7A 4IW1A 4LUFA 1E78A 1LNSA 2BXQA 1JNBA 3CX9A 5IIXA 2BXMA 4C31B 1H5WA 1MIWA 2YDFA 1HA2A 3MHSB 2XVUA 4MBEC 4WA6B 5D7GA 5B5TA 4W4UB 3NVKA 3H37A 4F5TA 4FJCB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LOQ A; 
#chains in the Genus database with same CATH topology
 1BKE A;  1MIY A;  2BXA A;  4FIP B;  4N3Z A;  4JK4 A;  4PO0 A;  1KXP D;  1HK2 A;  4ZBR A;  3WHS A;  3JQZ A;  1IJG A;  2XVW A;  4EMX A;  2DBX A;  4GDL B;  2Z8J A;  1HK1 A;  2DBW A;  1GNI A;  2BXO A;  4LB2 A;  2BXN A;  4HGK A;  4S1Y A;  2BX8 A;  1VFI A;  4IW2 A;  2BXE A;  3TDL A;  2DYO A;  3V09 A;  1BJ5 A;  4TQ1 A;  1E7G A;  2XW1 A;  4G04 A;  4N0U D;  4DHX B;  2BXF A;  4E99 A;  1J78 A;  2QHB A;  5GIN A;  3GQX A;  2OZB B;  1E7E A;  2XSI A;  4TQ0 A;  3V08 A;  2BXD A;  2I2Z A;  4ZC6 A;  1E7F A;  2EFC A;  1UOR A;  2CKX A;  2QMC A;  1MIV A;  4GDX A;  4HGM B;  2EFE A;  3SIU B;  3KJL A;  3ECP A;  4ZBK A;  1FOU A;  2E0Y A;  2LOQ A;  2BXB A;  2OT3 A;  4OTU A;  2EFD A;  4OR0 A;  2XW0 A;  2EFH A;  3VQI A;  1E7B A;  2KWF A;  3V03 A;  5HOZ A;  4Z69 A;  1TF0 A;  3BPJ A;  2V36 A;  3WHR A;  5BPK A;  1VZS A;  4L9K A;  1MA9 A;  2I30 A;  2KBZ A;  4LA0 A;  1HK4 A;  4GG2 A;  3JRY A;  4LB9 A;  3UIV A;  2BXI A;  1H9Z A;  3FNM A;  4G01 A;  2K0N A;  4LUH A;  4F5U A;  2BXP A;  4J2V A;  4G03 A;  3NVI A;  2GUT A;  1KW2 A;  2BXL A;  5ID9 A;  5GHK A;  2LQH A;  1AO6 A;  2BXG A;  1TXU A;  2QM6 A;  2Z8I A;  3NVM A;  1N5U A;  3B9M A;  3MHH B;  3KIK A;  1HK3 A;  2Z8K A;  2XMO A;  4ZUX V;  5FUO A;  3FWB C;  4OT2 A;  3PLA A;  2LQI A;  1E7I A;  5ID7 A;  3A75 A;  2DBU A;  3WHQ A;  2ROH A;  4L8U A;  3W1S A;  3G9K D;  4N0F D;  2DG5 A;  4L9Q A;  1KDX A;  5GIO A;  1BM0 A;  2NNW A;  5DBY A;  1NT2 B;  4DM0 A;  3NMU A;  5IJE A;  2JUH A;  4ZBQ A;  2XVV A;  2XVQ A;  2NQO A;  4F5S A;  1HK5 A;  5GIP A;  2VUF A;  2DYM A;  4D7X A;  3ICX A;  5IJF A;  3GA9 L;  5DQF A;  5IJ5 A;  2E0X A;  3GQU A;  3LU6 A;  1O9X A;  1LOT A;  1MM8 A;  3SQJ A;  2LXS A;  1E7A A;  3FWC C;  4M70 B;  4BKE A;  1MUH A;  4OTT A;  1J7E A;  2VUE A;  2AJE A;  2BXK A;  4Z9O A;  4GDK B;  2LXT A;  3B9L A;  4K71 A;  5IIH A;  3SIV B;  1E7H A;  3LU8 A;  3M99 C;  5IFO A;  4NAW B;  1E7C A;  4ZCG A;  5IIU A;  1GNJ A;  1MUS A;  4FK5 B;  4K2C A;  4BY9 C;  4F5V A;  3H3A A;  2BXH A;  2BXC A;  2VDB A;  3A73 A;  3LU7 A;  4IW1 A;  4LUF A;  1E78 A;  2AGH B;  1LNS A;  2BXQ A;  1JNB A;  3CX9 A;  5IIX A;  2BXM A;  4C31 B;  1H5W A;  1MIW A;  2YDF A;  1HA2 A;  3MHS B;  2XVU A;  4MBE C;  4WA6 B;  4I9O A;  5D7G A;  5B5T A;  4W4U B;  3NVK A;  3H37 A;  1SB0 A;  4F5T A;  4FJC B; 
#chains in the Genus database with same CATH homology
 1BKE A;  1MIY A;  2BXA A;  4FIP B;  4N3Z A;  4JK4 A;  4PO0 A;  1KXP D;  1HK2 A;  4ZBR A;  3WHS A;  3JQZ A;  1IJG A;  2XVW A;  4EMX A;  2DBX A;  4GDL B;  2Z8J A;  1HK1 A;  2DBW A;  1GNI A;  2BXO A;  4LB2 A;  2BXN A;  4HGK A;  4S1Y A;  2BX8 A;  1VFI A;  4IW2 A;  2BXE A;  3TDL A;  2DYO A;  3V09 A;  1BJ5 A;  4TQ1 A;  1E7G A;  2XW1 A;  4G04 A;  4N0U D;  4DHX B;  2BXF A;  4E99 A;  1J78 A;  2QHB A;  5GIN A;  3GQX A;  2OZB B;  1E7E A;  2XSI A;  4TQ0 A;  3V08 A;  2BXD A;  2I2Z A;  4ZC6 A;  1E7F A;  2EFC A;  1UOR A;  2CKX A;  2QMC A;  1MIV A;  4GDX A;  4HGM B;  2EFE A;  3SIU B;  3KJL A;  4ZBK A;  1FOU A;  2E0Y A;  2LOQ A;  2BXB A;  2OT3 A;  4OTU A;  2EFD A;  4OR0 A;  2XW0 A;  2EFH A;  3VQI A;  1E7B A;  4Z69 A;  3V03 A;  5HOZ A;  1TF0 A;  2V36 A;  3WHR A;  5BPK A;  1VZS A;  4L9K A;  1MA9 A;  2I30 A;  2KBZ A;  4LA0 A;  1HK4 A;  4GG2 A;  3JRY A;  4LB9 A;  3UIV A;  2BXI A;  1H9Z A;  3FNM A;  4G01 A;  4LUH A;  4F5U A;  2BXP A;  4J2V A;  4G03 A;  3NVI A;  1KW2 A;  2BXL A;  5ID9 A;  5GHK A;  1AO6 A;  2BXG A;  1TXU A;  2QM6 A;  2Z8I A;  3NVM A;  1N5U A;  3B9M A;  3MHH B;  3KIK A;  1HK3 A;  2Z8K A;  2XMO A;  4ZUX V;  5FUO A;  3FWB C;  4OT2 A;  3PLA A;  1E7I A;  5ID7 A;  3A75 A;  2DBU A;  3WHQ A;  2ROH A;  4L8U A;  3W1S A;  3G9K D;  4N0F D;  2DG5 A;  4L9Q A;  5GIO A;  1BM0 A;  2NNW A;  5DBY A;  1NT2 B;  3NMU A;  5IJE A;  2JUH A;  4ZBQ A;  2XVV A;  2XVQ A;  2NQO A;  4F5S A;  1HK5 A;  5GIP A;  2VUF A;  2DYM A;  3ICX A;  5IJF A;  3GA9 L;  5DQF A;  5IJ5 A;  2E0X A;  3GQU A;  3LU6 A;  1O9X A;  1LOT A;  3SQJ A;  1E7A A;  3FWC C;  4M70 B;  4BKE A;  4OTT A;  1J7E A;  2VUE A;  2AJE A;  2BXK A;  4Z9O A;  4GDK B;  3B9L A;  4K71 A;  5IIH A;  3SIV B;  1E7H A;  3LU8 A;  3M99 C;  5IFO A;  4NAW B;  1E7C A;  4ZCG A;  5IIU A;  1GNJ A;  4FK5 B;  4K2C A;  4BY9 C;  4F5V A;  3H3A A;  2BXH A;  2BXC A;  2VDB A;  3A73 A;  3LU7 A;  4IW1 A;  4LUF A;  1E78 A;  1LNS A;  2BXQ A;  1JNB A;  3CX9 A;  5IIX A;  2BXM A;  4C31 B;  1H5W A;  1MIW A;  2YDF A;  1HA2 A;  3MHS B;  2XVU A;  4MBE C;  4WA6 B;  5D7G A;  5B5T A;  4W4U B;  3NVK A;  3H37 A;  4F5T A;  4FJC B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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