2LOYA

Refined miminal constraint solution nmr structure of translationally-controlled tumor protein (tctp) from caenorhabditis elegans, northeast structural genomics consortium target wr73
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
183
structure length
183
Chain Sequence
MLIYKDIFTDDELSSDSFPMKLVDDLVYEFKGKHVVRKEGEIVLAGSNPSAEEGAEDDGSDEHVERGIDIVLNHKLVEMNCYEDASMFKAYIKKFMKNVIDHMEKNNRDKADVDAFKKKIQGWVVSLLAKDRFKNLAFFIGERAAEGAENGQVAIIEYRDVDGTEVPTLMLVKEAIIEEKCLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
molecule keywords Translationally-controlled tumor protein homolog
publication title Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples.
pubmed doi rcsb
source organism Caenorhabditis elegans
total genus 40
structure length 183
sequence length 183
ec nomenclature
pdb deposition date 2012-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00838 TCTP Translationally controlled tumour protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.150.10 Mainly Beta Beta Complex Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A 2loyA00
2HR9A 3P3KA 1FWQA 3EBMA 2KWBA 1H7YA 2LOYA 1YZ1A 1HXRA 1TXJA 1H6QA 2FU5A
chains in the Genus database with same CATH superfamily
5E3HA 3E0OA 1FWQA 2KZNA 2KWBA 4CI2B 1L1DA 4V2YA 3HCHA 5F98A 2HR9A 3EBMA 3OG8A 4TZCA 2QFDA 2FU5A 3HCIA 3CEZA 3P3KA 5AMHA 3NCUA 4AY2A 5F9HA 3LRRA 3E0MA 4V2ZA 3HCGA 5F9FA 2RMJA 2W4RA 3FACA 2QFBA 3HCJA 3WX1A 2RQAA 1H7YA 2RQBA 3EQTA 1HXRA 2LOYA 1TXJA 1H6QA 2K8DA 4V30A 4BPBA 3DJMA 4CI1B 4A2XA 4TZ4C 3MAOA 4A2VA 3WX2A 4CI3B 4TZUA 3GA3A 3LRNA 1YZ1A 2KV1A 4V31A 2YKGA 3CXKA 3ZD7A 3ZD6A 2LVLA
chains in the Genus database with same CATH topology
5E3HA 1FWQA 2KWBA 5F98A 2HR9A 3EBMA 3OG8A 2QFDA 2FU5A 3NCUA 3P3KA 4AY2A 5F9HA 3LRRA 5F9FA 2RMJA 2W4RA 3FACA 2QFBA 1H7YA 2RQAA 2RQBA 3EQTA 1HXRA 2LOYA 1TXJA 1H6QA 4A2XA 4BPBA 3DJMA 4A2VA 3GA3A 3LRNA 1YZ1A 2YKGA 3ZD7A 3ZD6A 2LVLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HR9 A;  3P3K A;  1FWQ A;  3EBM A;  2KWB A;  1H7Y A;  2LOY A;  1YZ1 A;  1HXR A;  1TXJ A;  1H6Q A;  2FU5 A; 
#chains in the Genus database with same CATH topology
 5E3H A;  3E0O A;  1FWQ A;  2KZN A;  2KWB A;  4CI2 B;  1L1D A;  4V2Y A;  3HCH A;  5F98 A;  2HR9 A;  3EBM A;  3OG8 A;  4TZC A;  2QFD A;  2FU5 A;  3HCI A;  3CEZ A;  3P3K A;  5AMH A;  3NCU A;  4AY2 A;  5F9H A;  3LRR A;  3E0M A;  4V2Z A;  3HCG A;  5F9F A;  2RMJ A;  2W4R A;  3FAC A;  2QFB A;  3HCJ A;  3WX1 A;  2RQA A;  1H7Y A;  2RQB A;  3EQT A;  1HXR A;  2LOY A;  1TXJ A;  1H6Q A;  2K8D A;  4V30 A;  4BPB A;  3DJM A;  4CI1 B;  4A2X A;  4TZ4 C;  3MAO A;  4A2V A;  3WX2 A;  4CI3 B;  4TZU A;  3GA3 A;  3LRN A;  1YZ1 A;  2KV1 A;  4V31 A;  2YKG A;  3CXK A;  3ZD7 A;  3ZD6 A;  2LVL A; 
#chains in the Genus database with same CATH homology
 5E3H A;  1FWQ A;  2KWB A;  5F98 A;  2HR9 A;  3EBM A;  3OG8 A;  2QFD A;  2FU5 A;  3NCU A;  3P3K A;  4AY2 A;  5F9H A;  3LRR A;  5F9F A;  2RMJ A;  2W4R A;  3FAC A;  2QFB A;  1H7Y A;  2RQA A;  2RQB A;  3EQT A;  1HXR A;  2LOY A;  1TXJ A;  1H6Q A;  4A2X A;  4BPB A;  3DJM A;  4A2V A;  3GA3 A;  3LRN A;  1YZ1 A;  2YKG A;  3ZD7 A;  3ZD6 A;  2LVL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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