2LQ7A

E2 binding surface on uba3 beta-grasp domain undergoes a conformational transition
Total Genus 17
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
97
structure length
97
Chain Sequence
GSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFTS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase
molecule keywords NEDD8-activating enzyme E1 catalytic subunit
publication title E2-binding surface on Uba3 beta-grasp domain undergoes a conformational transition.
pubmed doi rcsb
source organism Homo sapiens
total genus 17
structure length 97
sequence length 97
ec nomenclature ec 6.3.2.-:
pdb deposition date 2012-02-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08825 E2_bind E2 binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.290.20 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3 2lq7A00
2LQ7A 2NVUB 1Y8XB 1Y8QB 3KYCB 3KYDB 3ONHA 1Y8RB 3FN1A 3ONGA 5FQ2B 4W5VB
chains in the Genus database with same CATH superfamily
1C05A 1VIOA 2I1SA 4X65D 2KTLA 1J5ED 1Y8QB 1KSLA 4DUZD 1HR0D 4DR5D 4KHPD 1C06A 4NXND 1XNQD 4LF7D 4JI0D 1N33D 1I94D 4DR2D 4X64D 2LQ7A 1N32D 4X66D 3KYCB 3DH3A 1IBKD 4LF5D 2UXDD 2JANA 1N36D 4JI5D 5LMUD 4DV4D 4NNJA 2K6PA 4JI3D 4LFBD 1XMQD 1HNZD 4DR3D 4OX9D 4DV6D 4LFAD 4B3TD 4LF6D 1XMOD 4JI6D 3T1YD 4DR6D 4JI1D 4B3SD 3ONGA 4DR7D 2VQFD 4GKJD 4DR4D 4W5VB 5A2QE 1H3FA 2HHHD 4II3A 4DR1D 3FN1A 2ZTBA 1XNRD 4JI4D 1HNWD 2UUBD 1DM9A 2UU9D 1Y8RB 1FKAD 5LL6S 4DV0D 5IWAD 4DV7D 5IT9E 4AQYD 4DV1D 2F4VD 4X62D 4LFCD 3T1HD 1KSVA 4YY3D 2NVUB 5BR8D 4GKKD 2UXCD 4B3MD 4DV5D 4JYAD 5FQ2B 4DUYD 1Y8XB 3KYDB 3ONHA 1FJGD 4LF9D 2E5LD 4JV5D 4YHHD 3KBGA 4OUDA 4DV2D 4B3RD 4LGTA 4JI7D 3J7AF 1IBMD 5KNLA 1HNXD 5LMND 4NXMD 2UUAD 4II2A 2UXBD 3HP7A 3J80E 4DV3D 3JAME 1H3EA 1IBLD 1KSKA 3J81E 4JI8D 4LF4D 2UUCD 4JI2D 5FLXE 2VQED 4LF8D 3CMMA 3OTOD 1N34D 2ZM6D 1P9KA 4K0KD 2ISTA 1JH3A
chains in the Genus database with same CATH topology
2LQ7A 2NVUB 1Y8XB 1Y8QB 3KYCB 3KYDB 3ONHA 1Y8RB 3FN1A 3ONGA 5FQ2B 4W5VB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LQ7 A;  2NVU B;  1Y8X B;  1Y8Q B;  3KYC B;  3KYD B;  3ONH A;  1Y8R B;  3FN1 A;  3ONG A;  5FQ2 B;  4W5V B; 
#chains in the Genus database with same CATH topology
 1C05 A;  1VIO A;  2I1S A;  4X65 D;  2KTL A;  1J5E D;  1Y8Q B;  1KSL A;  4DUZ D;  1HR0 D;  4DR5 D;  4KHP D;  1C06 A;  4NXN D;  1XNQ D;  4LF7 D;  4JI0 D;  1N33 D;  1I94 D;  4DR2 D;  4X64 D;  2LQ7 A;  1N32 D;  4X66 D;  3KYC B;  3DH3 A;  1IBK D;  4LF5 D;  2UXD D;  2JAN A;  1N36 D;  4JI5 D;  5LMU D;  4DV4 D;  4NNJ A;  2K6P A;  4JI3 D;  4LFB D;  1XMQ D;  1HNZ D;  4DR3 D;  4OX9 D;  4DV6 D;  4LFA D;  4B3T D;  4LF6 D;  1XMO D;  4JI6 D;  3T1Y D;  4DR6 D;  4JI1 D;  4B3S D;  3ONG A;  4DR7 D;  2VQF D;  4GKJ D;  4DR4 D;  4W5V B;  5A2Q E;  1H3F A;  2HHH D;  4II3 A;  4DR1 D;  3FN1 A;  2ZTB A;  1XNR D;  4JI4 D;  1HNW D;  2UUB D;  1DM9 A;  2UU9 D;  1Y8R B;  1FKA D;  5LL6 S;  4DV0 D;  5IWA D;  4DV7 D;  5IT9 E;  4AQY D;  4DV1 D;  2F4V D;  4X62 D;  4LFC D;  3T1H D;  1KSV A;  4YY3 D;  2NVU B;  5BR8 D;  4GKK D;  2UXC D;  4B3M D;  4DV5 D;  4JYA D;  5FQ2 B;  4DUY D;  1Y8X B;  3KYD B;  3ONH A;  1FJG D;  4LF9 D;  2E5L D;  4JV5 D;  4YHH D;  3KBG A;  4OUD A;  4DV2 D;  4B3R D;  4LGT A;  4JI7 D;  3J7A F;  1IBM D;  5KNL A;  1HNX D;  5LMN D;  4NXM D;  2UUA D;  4II2 A;  2UXB D;  3HP7 A;  3J80 E;  4DV3 D;  3JAM E;  1H3E A;  1IBL D;  1KSK A;  3J81 E;  4JI8 D;  4LF4 D;  2UUC D;  4JI2 D;  5FLX E;  2VQE D;  4LF8 D;  3CMM A;  3OTO D;  1N34 D;  2ZM6 D;  1P9K A;  4K0K D;  2IST A;  1JH3 A; 
#chains in the Genus database with same CATH homology
 2LQ7 A;  2NVU B;  1Y8X B;  1Y8Q B;  3KYC B;  3KYD B;  3ONH A;  1Y8R B;  3FN1 A;  3ONG A;  5FQ2 B;  4W5V B; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...