2LRLD

Solution structures of the iia(chitobiose)-hpr complex of the n,n'-diacetylchitobiose branch of the escherichia coli phosphotransferase system
Total Genus 18
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
85
structure length
85
Chain Sequence
MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords N,N'-diacetylchitobiose-specific phosphotransferase enzyme I
publication title Solution Structure of the IIAChitobiose-HPr Complex of the N,N'-Diacetylchitobiose Branch of the Escherichia coli Phosphotransferase System.
pubmed doi rcsb
source organism Escherichia coli
total genus 18
structure length 85
sequence length 85
ec nomenclature ec 2.7.11.-:
pdb deposition date 2012-04-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00381 PTS-HPr PTS HPr component phosphorylation site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1340.10 Alpha Beta 2-Layer Sandwich Histidine-containing Protein; Chain: A; HPr-like 2lrlD00
1RZRL 1Y51A 3LE3A 2RLZA 2FEPS 5T1OA 2HPRA 2AK7A 1KA5A 1KKLH 1Y50A 1QR5A 3CCDA 3EZAB 3OQMD 1JEMA 1POHA 1PCHA 1CM2A 1PFHA 1VRCC 1TXEA 1KKMH 3EZEB 3OQND 1ZVVJ 2LRKD 3EZBB 1J6TB 3OQOD 1MO1A 1PTFA 2HIDA 2OENL 3LE1A 3IHSA 1QFRA 5T17A 2NZVL 1CM3A 1OPDA 3LFGA 2LRLD 4XWJB 3LNWA 2XDFC 1HDNA 2NZUL 3LE5A 1SPHA 1GGRB 1FU0A 1MO1B 5T1NA 2JELP 1Y4YA 1K1CA 1MU4A
chains in the Genus database with same CATH superfamily
1RZRL 1Y51A 3LE3A 2RLZA 2FEPS 5T1OA 1J5YA 2HPRA 2AK7A 1KA5A 1KKLH 1Y50A 1QR5A 3CCDA 3EZAB 3OQMD 1JEMA 1POHA 1PCHA 1CM2A 1PFHA 1VRCC 1TXEA 1KKMH 3EZEB 3OQND 1ZVVJ 2LRKD 3EZBB 1J6TB 3OQOD 1MO1A 1PTFA 2HIDA 2OENL 3LE1A 3IHSA 1QFRA 5T17A 2NZVL 1CM3A 1OPDA 3LFGA 2LRLD 4XWJB 3LNWA 2XDFC 1HDNA 2NZUL 3LE5A 1SPHA 1GGRB 1FU0A 1MO1B 5T1NA 2JELP 1Y4YA 1K1CA 1MU4A
chains in the Genus database with same CATH topology
1RZRL 1Y51A 3LE3A 2RLZA 2FEPS 5T1OA 2HPRA 2AK7A 1KA5A 1KKLH 1Y50A 1QR5A 3CCDA 3EZAB 3OQMD 1JEMA 1POHA 1PCHA 1CM2A 1PFHA 1VRCC 1TXEA 1KKMH 3EZEB 3OQND 1ZVVJ 2LRKD 3EZBB 1J6TB 3OQOD 1MO1A 1PTFA 2HIDA 2OENL 3LE1A 3IHSA 1QFRA 5T17A 2NZVL 1CM3A 1OPDA 3LFGA 2LRLD 4XWJB 3LNWA 2XDFC 1HDNA 2NZUL 3LE5A 1SPHA 1GGRB 1FU0A 1MO1B 5T1NA 2JELP 1Y4YA 1K1CA 1MU4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RZR L;  1Y51 A;  3LE3 A;  2RLZ A;  2FEP S;  5T1O A;  2HPR A;  2AK7 A;  1KA5 A;  1KKL H;  1Y50 A;  1QR5 A;  3CCD A;  3EZA B;  3OQM D;  1JEM A;  1POH A;  1PCH A;  1CM2 A;  1PFH A;  1VRC C;  1TXE A;  1KKM H;  3EZE B;  3OQN D;  1ZVV J;  2LRK D;  3EZB B;  1J6T B;  3OQO D;  1MO1 A;  1PTF A;  2HID A;  2OEN L;  3LE1 A;  3IHS A;  1QFR A;  5T17 A;  2NZV L;  1CM3 A;  1OPD A;  3LFG A;  2LRL D;  4XWJ B;  3LNW A;  2XDF C;  1HDN A;  2NZU L;  3LE5 A;  1SPH A;  1GGR B;  1FU0 A;  1MO1 B;  5T1N A;  2JEL P;  1Y4Y A;  1K1C A;  1MU4 A; 
#chains in the Genus database with same CATH topology
 1RZR L;  1Y51 A;  3LE3 A;  2RLZ A;  2FEP S;  5T1O A;  1J5Y A;  2HPR A;  2AK7 A;  1KA5 A;  1KKL H;  1Y50 A;  1QR5 A;  3CCD A;  3EZA B;  3OQM D;  1JEM A;  1POH A;  1PCH A;  1CM2 A;  1PFH A;  1VRC C;  1TXE A;  1KKM H;  3EZE B;  3OQN D;  1ZVV J;  2LRK D;  3EZB B;  1J6T B;  3OQO D;  1MO1 A;  1PTF A;  2HID A;  2OEN L;  3LE1 A;  3IHS A;  1QFR A;  5T17 A;  2NZV L;  1CM3 A;  1OPD A;  3LFG A;  2LRL D;  4XWJ B;  3LNW A;  2XDF C;  1HDN A;  2NZU L;  3LE5 A;  1SPH A;  1GGR B;  1FU0 A;  1MO1 B;  5T1N A;  2JEL P;  1Y4Y A;  1K1C A;  1MU4 A; 
#chains in the Genus database with same CATH homology
 1RZR L;  1Y51 A;  3LE3 A;  2RLZ A;  2FEP S;  5T1O A;  2HPR A;  2AK7 A;  1KA5 A;  1KKL H;  1Y50 A;  1QR5 A;  3CCD A;  3EZA B;  3OQM D;  1JEM A;  1POH A;  1PCH A;  1CM2 A;  1PFH A;  1VRC C;  1TXE A;  1KKM H;  3EZE B;  3OQN D;  1ZVV J;  2LRK D;  3EZB B;  1J6T B;  3OQO D;  1MO1 A;  1PTF A;  2HID A;  2OEN L;  3LE1 A;  3IHS A;  1QFR A;  5T17 A;  2NZV L;  1CM3 A;  1OPD A;  3LFG A;  2LRL D;  4XWJ B;  3LNW A;  2XDF C;  1HDN A;  2NZU L;  3LE5 A;  1SPH A;  1GGR B;  1FU0 A;  1MO1 B;  5T1N A;  2JEL P;  1Y4Y A;  1K1C A;  1MU4 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...