2LTLA

Solution nmr structure of nifu-like protein from saccharomyces cerevisiae, northeast structural genomics consortium (nesg) target yr313a
Total Genus 26
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
119
structure length
119
Chain Sequence
MGHHHHHHSHMNSQRLIHIKTLTTPNENALKFLSTDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCPGVESLMIGDDFLTINKDRMVHWNSIKPEIIDLLTKQLAYGEDVISKE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Electron transport
molecule keywords NifU-like protein, mitochondrial
publication title Solution NMR Structure of NifU-like protein from Saccharomyces cerevisiae, Northeast Structural Genomics Consortium (NESG) Target YR313A
rcsb
source organism Saccharomyces cerevisiae
total genus 26
structure length 119
sequence length 119
ec nomenclature
pdb deposition date 2012-05-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08712 Nfu_N Scaffold protein Nfu/NifU N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.70 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Scaffold protein Nfu/NifU, N-terminal domain 2ltlA00
1PQXA 2M6QA 2M8WA 2LTMA 2LTLA 2FFMA 2K1HA
chains in the Genus database with same CATH superfamily
2VKCA 4LF5H 4DV7H 4JI4H 3V69A 1I6UA 5K36G 3I0PA 2JA9A 4AQYH 1ZZJA 5JEAG 1HNZH 2LRRA 4B8TA 4NZTM 4DV5H 4LFCH 5LMUH 3AEVB 2NN6G 2F4VH 2OPVA 2JEBI 1WVNA 1ZZIA 2LTMA 4DR7H 2CTLA 2BL5A 4DR1H 4JI8H 4DUYH 4WALA 2Z0SA 4KHPH 2M8WA 1VIGA 4WANA 1XNQH 4DV0H 5IT9W 1XMOH 4B3TH 1F0XA 1NXUA 2M6QA 4X65H 4H8AA 4B3MH 3J81W 1WHRA 2JEAI 1HNWH 2FMRA 2CTKA 4LFBH 2E5LH 1DT4A 4DV3H 2DGRA 4B8CD 4NBQA 4JI1H 1S03G 4DR6H 4GKKH 1N32H 4DV1H 4DV2H 1J4WA 2PY9A 4LF4H 3T1HH 2ANRA 2JE6I 3KDGA 5IWAH 4DR2H 2FPHX 2PT7G 1FJGH 2UXCH 4K0KH 4JVHA 4JI5H 2CTEA 2HH3A 1VBIA 2FFMA 4NZRM 3SB1A 1N36H 4JI0H 2JZXA 1TUAA 4B3RH 3EZJA 1HR0H 3OSSD 4LF9H 4DR3H 2Y3MA 2O4CA 5C0XG 5FLXW 2HH2A 4NXNH 1MSZA 4B3SH 2PQUA 4DV4H 2K1HA 1N33H 4DR5H 1KHMA 3UOEA 4E9JA 4JI3H 1V9NA 2UXBH 3KDKA 1K1GA 1X0AA 1AN7A 3U1KA 2UU9H 4LF6H 2P2RA 3FAUA 1WTJA 1Z2IA 2YQRA 2UUCH 4DR4H 1IBKH 4LF7H 2CWHA 2ANNA 4JI6H 3RF2A 1ZTGA 4AM3A 2UUBH 1J5EH 1XNRH 3QD7X 2JVZA 4OD6A 4DV6H 2X06A 1HNXH 1ODHA 1UG8A 1EC6A 1IBLH 2CTMA 2QNDA 5DT9A 4EC5A 2CTJA 2MJHA 2CPQA 3GR5A 3NCVA 4NXMH 2E3UA 3OETA 4PDBA 1IBMH 3L7ZC 5LL6b 4G08A 4JI2H 5A2QW 3OTOH 2HHHH 2UUAH 4QMFB 4X66H 1ZZKA 2BA0A 2CPMA 4JV5H 4JI7H 4OCHA 5BR8H 4X62H 1DTJA 1V8CA 2ZQEA 1S20A 1WE8A 4JYAH 4BA2I 4IFDG 3JAMW 1XMQH 2OPUA 4LIJA 2UXDH 2CTFA 4X64H 4OO1G 2D9IA 1FKAH 4FJSA 3J80W 2VQFH 2ZM6H 4GKJH 3GABA 2LTLA 1X4MA 1X9ZA 4BA1I 4AIMA 3VKEA 1VIHA 4LF8H 2VQEH 1X4NA 4YHHH 2LF0A 1I94H 1N34H 2AXYA 4YY3H 4LFAH 4OX9H 1SEIA 5LMNH 1XRHA 2CWFA 1PQXA 2G8YA 3T1YH 2A1SA 3GKUA 3J7AK 4JVYA 4FJUA 4DUZH 1J5KA
chains in the Genus database with same CATH topology
1PQXA 2M6QA 2M8WA 2LTMA 2LTLA 2FFMA 2K1HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PQX A;  2M6Q A;  2M8W A;  2LTM A;  2LTL A;  2FFM A;  2K1H A; 
#chains in the Genus database with same CATH topology
 2VKC A;  4LF5 H;  4DV7 H;  4JI4 H;  3V69 A;  1I6U A;  5K36 G;  3I0P A;  2JA9 A;  4AQY H;  1ZZJ A;  5JEA G;  1HNZ H;  2LRR A;  4B8T A;  4NZT M;  4DV5 H;  4LFC H;  5LMU H;  3AEV B;  2NN6 G;  2F4V H;  2OPV A;  2JEB I;  1WVN A;  1ZZI A;  2LTM A;  4DR7 H;  2CTL A;  2BL5 A;  4DR1 H;  4JI8 H;  4DUY H;  4WAL A;  2Z0S A;  4KHP H;  2M8W A;  1VIG A;  4WAN A;  1XNQ H;  4DV0 H;  5IT9 W;  1XMO H;  4B3T H;  1F0X A;  1NXU A;  2M6Q A;  4X65 H;  4H8A A;  4B3M H;  3J81 W;  1WHR A;  2JEA I;  1HNW H;  2FMR A;  2CTK A;  4LFB H;  2E5L H;  1DT4 A;  4DV3 H;  2DGR A;  4B8C D;  4NBQ A;  4JI1 H;  1S03 G;  4DR6 H;  4GKK H;  1N32 H;  4DV1 H;  4DV2 H;  1J4W A;  2PY9 A;  4LF4 H;  3T1H H;  2ANR A;  2JE6 I;  3KDG A;  5IWA H;  4DR2 H;  2FPH X;  2PT7 G;  1FJG H;  2UXC H;  4K0K H;  4JVH A;  4JI5 H;  2CTE A;  2HH3 A;  1VBI A;  2FFM A;  4NZR M;  3SB1 A;  1N36 H;  4JI0 H;  2JZX A;  1TUA A;  4B3R H;  3EZJ A;  1HR0 H;  3OSS D;  4LF9 H;  4DR3 H;  2Y3M A;  2O4C A;  5C0X G;  5FLX W;  2HH2 A;  4NXN H;  1MSZ A;  4B3S H;  2PQU A;  4DV4 H;  2K1H A;  1N33 H;  4DR5 H;  1KHM A;  3UOE A;  4E9J A;  4JI3 H;  1V9N A;  2UXB H;  3KDK A;  1K1G A;  1X0A A;  1AN7 A;  3U1K A;  2UU9 H;  4LF6 H;  2P2R A;  3FAU A;  1WTJ A;  1Z2I A;  2YQR A;  2UUC H;  4DR4 H;  1IBK H;  4LF7 H;  2CWH A;  2ANN A;  4JI6 H;  3RF2 A;  1ZTG A;  4AM3 A;  2UUB H;  1J5E H;  1XNR H;  3QD7 X;  2JVZ A;  4OD6 A;  4DV6 H;  2X06 A;  1HNX H;  1ODH A;  1UG8 A;  1EC6 A;  1IBL H;  2CTM A;  2QND A;  5DT9 A;  4EC5 A;  2CTJ A;  2MJH A;  2CPQ A;  3GR5 A;  3NCV A;  4NXM H;  2E3U A;  3OET A;  4PDB A;  1IBM H;  3L7Z C;  5LL6 b;  4G08 A;  4JI2 H;  5A2Q W;  3OTO H;  2HHH H;  2UUA H;  4QMF B;  4X66 H;  1ZZK A;  2BA0 A;  2CPM A;  4JV5 H;  4JI7 H;  4OCH A;  5BR8 H;  4X62 H;  1DTJ A;  1V8C A;  2ZQE A;  1S20 A;  1WE8 A;  4JYA H;  4BA2 I;  4IFD G;  3JAM W;  1XMQ H;  2OPU A;  4LIJ A;  2UXD H;  2CTF A;  4X64 H;  4OO1 G;  2D9I A;  1FKA H;  4FJS A;  3J80 W;  2VQF H;  2ZM6 H;  4GKJ H;  3GAB A;  2LTL A;  1X4M A;  1X9Z A;  4BA1 I;  4AIM A;  3VKE A;  1VIH A;  4LF8 H;  2VQE H;  1X4N A;  4YHH H;  2LF0 A;  1I94 H;  1N34 H;  2AXY A;  4YY3 H;  4LFA H;  4OX9 H;  1SEI A;  5LMN H;  1XRH A;  2CWF A;  1PQX A;  2G8Y A;  3T1Y H;  2A1S A;  3GKU A;  3J7A K;  4JVY A;  4FJU A;  4DUZ H;  1J5K A; 
#chains in the Genus database with same CATH homology
 1PQX A;  2M6Q A;  2M8W A;  2LTM A;  2LTL A;  2FFM A;  2K1H A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...