2LVFA

Solution structure of the brazil nut 2s albumin ber e 1
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
114
structure length
114
Chain Sequence
EAEAQEECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLSPMRCPMGGSIAGF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Allergen
molecule keywords 2S albumin
publication title Solution structure, copper binding and backbone dynamics of recombinant Ber e 1-the major allergen from Brazil nut.
pubmed doi rcsb
source organism Bertholletia excelsa
total genus 33
structure length 114
sequence length 114
ec nomenclature
pdb deposition date 2012-07-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.110.10 Mainly Alpha Orthogonal Bundle Hydrophobic Seed Protein Plant lipid-transfer and hydrophobic proteins 2lvfA00
1FK2A 4XUWA 1CZ2A 1JTBA 1B1UA 1L6HA 1MIDA 1TMQB 1BFAA 1UVBA 1FK0A 2MALA 1FK1A 1FK4A 1FK7A 1FK5A 1HYPA 1UVCA 1UVAA 1BV2A 1T12A 2DS2B 2RKNA 1N89A 2ALGA 1PNBB 1MZMA 1HSSA 1RZLA 1BIPA 1LIPA 1TUKA 4CVWC 1BEAA 1SIYA 1BE2A 2B5SA 1FK6A 1W2QA 1BWOA 1GH1A 2N2ZA 1S6DA 3GSHA 2LVFA 1PSYA 5DOMA 1MZLA 1FK3A 2N81A 1AFHA 1SM7A
chains in the Genus database with same CATH superfamily
1FK2A 4XUWA 1CZ2A 1JTBA 1B1UA 1L6HA 1MIDA 1TMQB 2UV8G 1BFAA 3H3AA 2VKZG 1UVBA 1FK0A 3H37A 1MIVA 1FK1A 1FK4A 1FK7A 1FK5A 1HYPA 1UVCA 1UVAA 2MALA 3HMJG 1T12A 1BV2A 1MIWA 2DS2B 2RKNA 1N89A 2ALGA 1PNBB 1MZMA 1HSSA 1RZLA 1BIPA 1LIPA 1TUKA 4CVWC 1BEAA 1SIYA 1BE2A 2B5SA 1FK6A 1W2QA 1BWOA 1GH1A 2N2ZA 1S6DA 3GSHA 2LVFA 1PSYA 5DOMA 1MZLA 1FK3A 2N81A 1AFHA 1SM7A 1MIYA
chains in the Genus database with same CATH topology
1FK2A 4XUWA 1CZ2A 1JTBA 1B1UA 1L6HA 1MIDA 1TMQB 1BFAA 1UVBA 1FK0A 2MALA 1FK1A 1FK4A 1FK7A 1FK5A 1HYPA 1UVCA 1UVAA 1BV2A 1T12A 2DS2B 2RKNA 1N89A 2ALGA 1PNBB 1MZMA 1HSSA 1RZLA 1BIPA 1LIPA 1TUKA 4CVWC 1BEAA 1SIYA 1BE2A 2B5SA 1FK6A 1W2QA 1BWOA 1GH1A 2N2ZA 1S6DA 3GSHA 2LVFA 1PSYA 5DOMA 1MZLA 1FK3A 2N81A 1AFHA 1SM7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FK2 A;  4XUW A;  1CZ2 A;  1JTB A;  1B1U A;  1L6H A;  1MID A;  1TMQ B;  1BFA A;  1UVB A;  1FK0 A;  2MAL A;  1FK1 A;  1FK4 A;  1FK7 A;  1FK5 A;  1HYP A;  1UVC A;  1UVA A;  1BV2 A;  1T12 A;  2DS2 B;  2RKN A;  1N89 A;  2ALG A;  1PNB B;  1MZM A;  1HSS A;  1RZL A;  1BIP A;  1LIP A;  1TUK A;  4CVW C;  1BEA A;  1SIY A;  1BE2 A;  2B5S A;  1FK6 A;  1W2Q A;  1BWO A;  1GH1 A;  2N2Z A;  1S6D A;  3GSH A;  2LVF A;  1PSY A;  5DOM A;  1MZL A;  1FK3 A;  2N81 A;  1AFH A;  1SM7 A; 
#chains in the Genus database with same CATH topology
 1FK2 A;  4XUW A;  1CZ2 A;  1JTB A;  1B1U A;  1L6H A;  1MID A;  1TMQ B;  2UV8 G;  1BFA A;  3H3A A;  2VKZ G;  1UVB A;  1FK0 A;  3H37 A;  1MIV A;  1FK1 A;  1FK4 A;  1FK7 A;  1FK5 A;  1HYP A;  1UVC A;  1UVA A;  2MAL A;  3HMJ G;  1T12 A;  1BV2 A;  1MIW A;  2DS2 B;  2RKN A;  1N89 A;  2ALG A;  1PNB B;  1MZM A;  1HSS A;  1RZL A;  1BIP A;  1LIP A;  1TUK A;  4CVW C;  1BEA A;  1SIY A;  1BE2 A;  2B5S A;  1FK6 A;  1W2Q A;  1BWO A;  1GH1 A;  2N2Z A;  1S6D A;  3GSH A;  2LVF A;  1PSY A;  5DOM A;  1MZL A;  1FK3 A;  2N81 A;  1AFH A;  1SM7 A;  1MIY A; 
#chains in the Genus database with same CATH homology
 1FK2 A;  4XUW A;  1CZ2 A;  1JTB A;  1B1U A;  1L6H A;  1MID A;  1TMQ B;  1BFA A;  1UVB A;  1FK0 A;  2MAL A;  1FK1 A;  1FK4 A;  1FK7 A;  1FK5 A;  1HYP A;  1UVC A;  1UVA A;  1BV2 A;  1T12 A;  2DS2 B;  2RKN A;  1N89 A;  2ALG A;  1PNB B;  1MZM A;  1HSS A;  1RZL A;  1BIP A;  1LIP A;  1TUK A;  4CVW C;  1BEA A;  1SIY A;  1BE2 A;  2B5S A;  1FK6 A;  1W2Q A;  1BWO A;  1GH1 A;  2N2Z A;  1S6D A;  3GSH A;  2LVF A;  1PSY A;  5DOM A;  1MZL A;  1FK3 A;  2N81 A;  1AFH A;  1SM7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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