2LXRA

Solution structure of hp1264 from helicobacter pylori
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
76
structure length
76
Chain Sequence
MKRFDLRPLKAGIFERLEELIEKEMQPNEVAIFMFEVGDFSNIPKSAEFIQSKGHELLNSLRFNQADWTIVVRKKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords NADH dehydrogenase I subunit E
publication title Solution structure of HP1264, Complex I subunit E from Helicobacter pylori, reveals a novel fold for FMN binding protein
rcsb
source organism Helicobacter pylori
total genus 10
structure length 76
sequence length 76
ec nomenclature
pdb deposition date 2012-08-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16514 NADH-UOR_E putative NADH-ubiquinone oxidoreductase chain E
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.110.40 Alpha Beta 2-Layer Sandwich Translation Initiation Factor IF3 TusA-like domain 2lxrA00
1JE3A 2LXRA 3HZ7A 3LVKB 1DCJA 1PAVA 3LVJC 1JDQA
chains in the Genus database with same CATH superfamily
3TTCA 1NJ6A 3WBMA 4NCXA 1II7A 2IFEA 4K87A 1H0XA 4FBKA 4OLFA 4HVZA 3HZ7A 3IABA 1NJ8A 2Q3VA 3IALA 4NZTM 4EO0A 3ZIGA 4YDQA 2LN3A 1XEZA 3T1IA 1HC7A 1NH9A 2BKYX 4WI1A 3DSDA 1H4TA 3P04A 1NJ1A 2P9BA 4FBQA 4FCXA 3ZIIA 3TSQA 2Y1BA 1PAVA 1JDQA 3IABB 3U6YA 1JE3A 4YKEA 3QKBA 1DCJA 1S8EA 3TTDA 4K88A 1NFHA 2EH1A 4NZRM 1LN4A 3TTFA 1TIGA 1H4SA 1Y2IA 1RQ8A 1Y9XA 2M71A 1NFJA 4TWAA 1VM0A 4HD0A 1NJ2A 3VTHA 1H0YA 2H9UA 3TSPA 2LXRA 2GTCA 3TOEA 3LVJC 2L8YA 3TSUA 2EK0A 3LVKB 1H4QA 1VR4A 2Z7CA 4HVCA 3ZIEA 2A2YA 1UDVA 3VTIA 1NJ5A 4Z9EA 4Q15A 2CRQA 3ZIHA 4FBWA 3DSCA 4K86A 1JO0A
chains in the Genus database with same CATH topology
1JE3A 2LXRA 3HZ7A 3LVKB 1DCJA 1PAVA 3LVJC 1JDQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JE3 A;  2LXR A;  3HZ7 A;  3LVK B;  1DCJ A;  1PAV A;  3LVJ C;  1JDQ A; 
#chains in the Genus database with same CATH topology
 3TTC A;  1NJ6 A;  3WBM A;  4NCX A;  1II7 A;  2IFE A;  4K87 A;  1H0X A;  4FBK A;  4OLF A;  4HVZ A;  3HZ7 A;  3IAB A;  1NJ8 A;  2Q3V A;  3IAL A;  4NZT M;  4EO0 A;  3ZIG A;  4YDQ A;  2LN3 A;  1XEZ A;  3T1I A;  1HC7 A;  1NH9 A;  2BKY X;  4WI1 A;  3DSD A;  1H4T A;  3P04 A;  1NJ1 A;  2P9B A;  4FBQ A;  4FCX A;  3ZII A;  3TSQ A;  2Y1B A;  1PAV A;  1JDQ A;  3IAB B;  3U6Y A;  1JE3 A;  4YKE A;  3QKB A;  1DCJ A;  1S8E A;  3TTD A;  4K88 A;  1NFH A;  2EH1 A;  4NZR M;  1LN4 A;  3TTF A;  1TIG A;  1H4S A;  1Y2I A;  1RQ8 A;  1Y9X A;  2M71 A;  1NFJ A;  4TWA A;  1VM0 A;  4HD0 A;  1NJ2 A;  3VTH A;  1H0Y A;  2H9U A;  3TSP A;  2LXR A;  2GTC A;  3TOE A;  3LVJ C;  2L8Y A;  3TSU A;  2EK0 A;  3LVK B;  1H4Q A;  1VR4 A;  2Z7C A;  4HVC A;  3ZIE A;  2A2Y A;  1UDV A;  3VTI A;  1NJ5 A;  4Z9E A;  4Q15 A;  2CRQ A;  3ZIH A;  4FBW A;  3DSC A;  4K86 A;  1JO0 A; 
#chains in the Genus database with same CATH homology
 1JE3 A;  2LXR A;  3HZ7 A;  3LVK B;  1DCJ A;  1PAV A;  3LVJ C;  1JDQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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