2LXXA

Solution structure of cofilin like unc-60b protein from caenorhabditis elegans
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
152
structure length
152
Chain Sequence
MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKLVEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASLGLESLFQVQASEMSDLDEKSVKSDLMSNQRI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Actin-depolymerizing factor 2, isoform c
publication title Solution structure and dynamics of UNC-60B from Caenorhabditis elegans
rcsb
source organism Caenorhabditis elegans
total genus 39
structure length 152
sequence length 152
ec nomenclature
pdb deposition date 2012-09-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 2lxxA00
1CFYA 1T3XA 5KYXB 3EGDA 3CJCG 2VILA 5KYYA 1TVJA 3EFOB 2MOTA 1TMWA 2LJ8A 1QPVA 2XF1A 1KCQA 2I2QA 1P8ZG 5HVKB 5KYWA 3EG9A 1J72A 2W0IA 4S10C 2LLFA 1PCXA 1NM1G 1M2VA 4CBWG 1Q8XA 1H1VG 3CIPG 3CI5G 2D8BA 3EGXB 2LXXA 1WM4A 3L50A 1D0NA 1V6FA 1CNUA 5KYXA 3A5NS 1T2LA 4KEDA 3FFKA 1SVRA 1PD1A 1T44G 1D4XG 1T3YA 5KYUB 5KYNA 2NUPB 2FH1A 3EFOA 2XFAA 4BEX1 1SVYA 3TU5B 3EH2A 4PKGG 2MP4A 1WNJA 1YVNG 4KEFA 4PKIG 2QTVA 2HD7A 1AK7A 2NUTB 1AHQA 3A5MS 1NMDG 2MV2A 2FH2A 1HQZ1 2FH4A 3CJBG 1M2OA 2FF6G 5HVKD 2L72A 1VFQA 3EGXA 1RGIG 3A5LS 5L6WC 1F7SA 3EH1A 1DEJS 2FF3A 1M4JA 5KYUA 1VKKA 1X67A 2NUPA 4Z94G 4JD2H 1C0GS 4PKHB 1EQYS 3EGDB 1NPHA 5KYYB 1Q8GA 3FFNA 2NUTA 1ESVS 1NLVG 3FG6A 2VACA 1AK6A 1PD0A 5FAFA 2FGHA 3Q2BA 3FG7A 3DAWB 4KEEA 4LIZA 2VIKA 5A1MA 5IVUA 5FAEA 5KYWB 3EG9B 1UDMA 1WFSA 4CBUG 1COFA 1JHWA 1M2VB 3A5OS 1P8XA 1YAGG 1C0FS 2FH3A 5DD2A 1MDUA 1SVQA 2KVKA 4CBXG
chains in the Genus database with same CATH superfamily
1CFYA 1T3XA 5KYXB 3EGDA 3CJCG 2VILA 5KYYA 1TVJA 3EFOB 2MOTA 1TMWA 2LJ8A 1QPVA 2XF1A 1KCQA 2I2QA 1P8ZG 5HVKB 5KYWA 3EG9A 1J72A 2W0IA 4S10C 2LLFA 1PCXA 1NM1G 1M2VA 4CBWG 1Q8XA 1H1VG 3CIPG 3CI5G 2D8BA 3EGXB 2LXXA 1WM4A 3L50A 1D0NA 1V6FA 1CNUA 5KYXA 3A5NS 1T2LA 4KEDA 3FFKA 1SVRA 1PD1A 1T44G 1D4XG 1T3YA 5KYUB 5KYNA 2NUPB 2FH1A 3EFOA 2XFAA 4BEX1 1SVYA 3TU5B 3EH2A 4PKGG 2MP4A 1WNJA 1YVNG 4KEFA 4PKIG 2QTVA 2HD7A 1AK7A 2NUTB 1AHQA 3A5MS 1NMDG 2MV2A 2FH2A 1HQZ1 2FH4A 3CJBG 1M2OA 2FF6G 5HVKD 2L72A 1VFQA 3EGXA 1RGIG 3A5LS 5L6WC 1F7SA 3EH1A 1DEJS 2FF3A 1M4JA 5KYUA 1VKKA 1X67A 2NUPA 4Z94G 4JD2H 1C0GS 4PKHB 1EQYS 3EGDB 1NPHA 5KYYB 1Q8GA 3FFNA 3DA7A 2NUTA 1ESVS 1NLVG 3FG6A 2VACA 1AK6A 1PD0A 5FAFA 2FGHA 3Q2BA 3FG7A 3DAWB 4KEEA 4LIZA 2VIKA 5A1MA 5IVUA 5FAEA 5KYWB 3EG9B 1UDMA 1WFSA 4CBUG 1COFA 1JHWA 1M2VB 3A5OS 1P8XA 1YAGG 1C0FS 2FH3A 5DD2A 1MDUA 1SVQA 2KVKA 4CBXG
chains in the Genus database with same CATH topology
1CFYA 1T3XA 5KYXB 3EGDA 3CJCG 2VILA 5KYYA 1TVJA 3EFOB 2MOTA 1TMWA 2LJ8A 1QPVA 2XF1A 1KCQA 2I2QA 1P8ZG 5HVKB 5KYWA 3EG9A 1J72A 2W0IA 4S10C 2LLFA 1PCXA 1NM1G 1M2VA 4CBWG 1Q8XA 1H1VG 3CIPG 3CI5G 2D8BA 3EGXB 2LXXA 1WM4A 3L50A 1D0NA 1V6FA 1CNUA 5KYXA 3A5NS 1T2LA 4KEDA 3FFKA 1SVRA 1PD1A 1T44G 1D4XG 1T3YA 5KYUB 5KYNA 2NUPB 2FH1A 3EFOA 2XFAA 4BEX1 1SVYA 3TU5B 3EH2A 4PKGG 2MP4A 1WNJA 1YVNG 4KEFA 4PKIG 2QTVA 2HD7A 1AK7A 2NUTB 1AHQA 3A5MS 1NMDG 2MV2A 2FH2A 1HQZ1 2FH4A 3CJBG 1M2OA 2FF6G 5HVKD 2L72A 1VFQA 3EGXA 1RGIG 3A5LS 5L6WC 1F7SA 3EH1A 1DEJS 2FF3A 1M4JA 5KYUA 1VKKA 1X67A 2NUPA 4Z94G 4JD2H 1C0GS 4PKHB 1EQYS 3EGDB 1NPHA 5KYYB 1Q8GA 3FFNA 3DA7A 2NUTA 1ESVS 1NLVG 3FG6A 2VACA 1AK6A 1PD0A 5FAFA 2FGHA 3Q2BA 3FG7A 3DAWB 4KEEA 4LIZA 2VIKA 5A1MA 5IVUA 5FAEA 5KYWB 3EG9B 1UDMA 1WFSA 4CBUG 1COFA 1JHWA 1M2VB 3A5OS 1P8XA 1YAGG 1C0FS 2FH3A 5DD2A 1MDUA 1SVQA 2KVKA 4CBXG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CFY A;  1T3X A;  5KYX B;  3EGD A;  3CJC G;  2VIL A;  5KYY A;  1TVJ A;  3EFO B;  2MOT A;  1TMW A;  2LJ8 A;  1QPV A;  2XF1 A;  1KCQ A;  2I2Q A;  1P8Z G;  5HVK B;  5KYW A;  3EG9 A;  1J72 A;  2W0I A;  4S10 C;  2LLF A;  1PCX A;  1NM1 G;  1M2V A;  4CBW G;  1Q8X A;  1H1V G;  3CIP G;  3CI5 G;  2D8B A;  3EGX B;  2LXX A;  1WM4 A;  3L50 A;  1D0N A;  1V6F A;  1CNU A;  5KYX A;  3A5N S;  1T2L A;  4KED A;  3FFK A;  1SVR A;  1PD1 A;  1T44 G;  1D4X G;  1T3Y A;  5KYU B;  5KYN A;  2NUP B;  2FH1 A;  3EFO A;  2XFA A;  4BEX 1;  1SVY A;  3TU5 B;  3EH2 A;  4PKG G;  2MP4 A;  1WNJ A;  1YVN G;  4KEF A;  4PKI G;  2QTV A;  2HD7 A;  1AK7 A;  2NUT B;  1AHQ A;  3A5M S;  1NMD G;  2MV2 A;  2FH2 A;  1HQZ 1;  2FH4 A;  3CJB G;  1M2O A;  2FF6 G;  5HVK D;  2L72 A;  1VFQ A;  3EGX A;  1RGI G;  3A5L S;  5L6W C;  1F7S A;  3EH1 A;  1DEJ S;  2FF3 A;  1M4J A;  5KYU A;  1VKK A;  1X67 A;  2NUP A;  4Z94 G;  4JD2 H;  1C0G S;  4PKH B;  1EQY S;  3EGD B;  1NPH A;  5KYY B;  1Q8G A;  3FFN A;  2NUT A;  1ESV S;  1NLV G;  3FG6 A;  2VAC A;  1AK6 A;  1PD0 A;  5FAF A;  2FGH A;  3Q2B A;  3FG7 A;  3DAW B;  4KEE A;  4LIZ A;  2VIK A;  5A1M A;  5IVU A;  5FAE A;  5KYW B;  3EG9 B;  1UDM A;  1WFS A;  4CBU G;  1COF A;  1JHW A;  1M2V B;  3A5O S;  1P8X A;  1YAG G;  1C0F S;  2FH3 A;  5DD2 A;  1MDU A;  1SVQ A;  2KVK A;  4CBX G; 
#chains in the Genus database with same CATH topology
 1CFY A;  1T3X A;  5KYX B;  3EGD A;  3CJC G;  2VIL A;  5KYY A;  1TVJ A;  3EFO B;  2MOT A;  1TMW A;  2LJ8 A;  1QPV A;  2XF1 A;  1KCQ A;  2I2Q A;  1P8Z G;  5HVK B;  5KYW A;  3EG9 A;  1J72 A;  2W0I A;  4S10 C;  2LLF A;  1PCX A;  1NM1 G;  1M2V A;  4CBW G;  1Q8X A;  1H1V G;  3CIP G;  3CI5 G;  2D8B A;  3EGX B;  2LXX A;  1WM4 A;  3L50 A;  1D0N A;  1V6F A;  1CNU A;  5KYX A;  3A5N S;  1T2L A;  4KED A;  3FFK A;  1SVR A;  1PD1 A;  1T44 G;  1D4X G;  1T3Y A;  5KYU B;  5KYN A;  2NUP B;  2FH1 A;  3EFO A;  2XFA A;  4BEX 1;  1SVY A;  3TU5 B;  3EH2 A;  4PKG G;  2MP4 A;  1WNJ A;  1YVN G;  4KEF A;  4PKI G;  2QTV A;  2HD7 A;  1AK7 A;  2NUT B;  1AHQ A;  3A5M S;  1NMD G;  2MV2 A;  2FH2 A;  1HQZ 1;  2FH4 A;  3CJB G;  1M2O A;  2FF6 G;  5HVK D;  2L72 A;  1VFQ A;  3EGX A;  1RGI G;  3A5L S;  5L6W C;  1F7S A;  3EH1 A;  1DEJ S;  2FF3 A;  1M4J A;  5KYU A;  1VKK A;  1X67 A;  2NUP A;  4Z94 G;  4JD2 H;  1C0G S;  4PKH B;  1EQY S;  3EGD B;  1NPH A;  5KYY B;  1Q8G A;  3FFN A;  3DA7 A;  2NUT A;  1ESV S;  1NLV G;  3FG6 A;  2VAC A;  1AK6 A;  1PD0 A;  5FAF A;  2FGH A;  3Q2B A;  3FG7 A;  3DAW B;  4KEE A;  4LIZ A;  2VIK A;  5A1M A;  5IVU A;  5FAE A;  5KYW B;  3EG9 B;  1UDM A;  1WFS A;  4CBU G;  1COF A;  1JHW A;  1M2V B;  3A5O S;  1P8X A;  1YAG G;  1C0F S;  2FH3 A;  5DD2 A;  1MDU A;  1SVQ A;  2KVK A;  4CBX G; 
#chains in the Genus database with same CATH homology
 1CFY A;  1T3X A;  5KYX B;  3EGD A;  3CJC G;  2VIL A;  5KYY A;  1TVJ A;  3EFO B;  2MOT A;  1TMW A;  2LJ8 A;  1QPV A;  2XF1 A;  1KCQ A;  2I2Q A;  1P8Z G;  5HVK B;  5KYW A;  3EG9 A;  1J72 A;  2W0I A;  4S10 C;  2LLF A;  1PCX A;  1NM1 G;  1M2V A;  4CBW G;  1Q8X A;  1H1V G;  3CIP G;  3CI5 G;  2D8B A;  3EGX B;  2LXX A;  1WM4 A;  3L50 A;  1D0N A;  1V6F A;  1CNU A;  5KYX A;  3A5N S;  1T2L A;  4KED A;  3FFK A;  1SVR A;  1PD1 A;  1T44 G;  1D4X G;  1T3Y A;  5KYU B;  5KYN A;  2NUP B;  2FH1 A;  3EFO A;  2XFA A;  4BEX 1;  1SVY A;  3TU5 B;  3EH2 A;  4PKG G;  2MP4 A;  1WNJ A;  1YVN G;  4KEF A;  4PKI G;  2QTV A;  2HD7 A;  1AK7 A;  2NUT B;  1AHQ A;  3A5M S;  1NMD G;  2MV2 A;  2FH2 A;  1HQZ 1;  2FH4 A;  3CJB G;  1M2O A;  2FF6 G;  5HVK D;  2L72 A;  1VFQ A;  3EGX A;  1RGI G;  3A5L S;  5L6W C;  1F7S A;  3EH1 A;  1DEJ S;  2FF3 A;  1M4J A;  5KYU A;  1VKK A;  1X67 A;  2NUP A;  4Z94 G;  4JD2 H;  1C0G S;  4PKH B;  1EQY S;  3EGD B;  1NPH A;  5KYY B;  1Q8G A;  3FFN A;  3DA7 A;  2NUT A;  1ESV S;  1NLV G;  3FG6 A;  2VAC A;  1AK6 A;  1PD0 A;  5FAF A;  2FGH A;  3Q2B A;  3FG7 A;  3DAW B;  4KEE A;  4LIZ A;  2VIK A;  5A1M A;  5IVU A;  5FAE A;  5KYW B;  3EG9 B;  1UDM A;  1WFS A;  4CBU G;  1COF A;  1JHW A;  1M2V B;  3A5O S;  1P8X A;  1YAG G;  1C0F S;  2FH3 A;  5DD2 A;  1MDU A;  1SVQ A;  2KVK A;  4CBX G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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