2M33A

Solution nmr structure of full-length oxidized microsomal rabbit cytochrome b5
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
104
structure length
104
Chain Sequence
MAAQSDKDVKYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPDDRSKLSKPMETLITTVD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords Cytochrome b5
publication title NMR structure of full-length mammalian cytochrome b5
rcsb
source organism Oryctolagus cuniculus
total genus 27
structure length 104
sequence length 104
ec nomenclature
pdb deposition date 2013-01-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 2m33A00
1CYOA 1F04A 2I96A 1LCOA 1FCBA 1SH4A 4X8YA 2AXXA 1B5MA 1J0QA 1MNYA 1DO9A 1B5BA 1IEUA 1M2IA 2I89A 1U9UA 3X33A 1IB7A 1J03A 1M59A 4B8NA 4HINA 1IETA 1LDCA 1LR6A 2OZ0A 1MJ4A 1JEXA 1AW3A 1CXYA 1I8CA 1X3XA 1I87A 2IBJA 1LJ0A 1AXXA 1I5UA 1LTDA 1BLVA 1M2MA 3MUSA 3X34A 1ICCA 1NX7A 1AQAA 1T0GA 3X32A 1HKOA 4HILA 1KBIA 2KEOA 1M20A 3KS0A 3NERA 1EUEA 2M33A 1EHBA 1U9MA 1AWPA 1LQXA 1ES1A 1SOXA 3LF5A 3X35A 1B5AA 1F03A 1BFXA 3OZZB
chains in the Genus database with same CATH superfamily
1CYOA 1F04A 2I96A 1LCOA 1FCBA 1SH4A 4X8YA 2AXXA 1B5MA 1J0QA 1MNYA 1DO9A 1B5BA 1IEUA 1M2IA 2I89A 1U9UA 3X33A 1IB7A 1J03A 1M59A 4B8NA 4HINA 1IETA 1LDCA 1LR6A 2OZ0A 1MJ4A 1JEXA 1AW3A 1CXYA 1I8CA 1X3XA 1I87A 2IBJA 1LJ0A 1AXXA 1I5UA 1LTDA 1BLVA 1M2MA 3MUSA 3X34A 1ICCA 1NX7A 1AQAA 1T0GA 3X32A 1HKOA 4HILA 1KBIA 2KEOA 1M20A 3KS0A 3NERA 1EUEA 2M33A 1EHBA 1U9MA 1AWPA 1LQXA 1ES1A 1SOXA 3LF5A 3X35A 1B5AA 1F03A 1BFXA 3OZZB
chains in the Genus database with same CATH topology
1CYOA 1F04A 2I96A 1LCOA 1FCBA 1SH4A 4X8YA 2AXXA 1B5MA 1J0QA 1MNYA 1DO9A 1B5BA 1IEUA 1M2IA 2I89A 1U9UA 3X33A 1IB7A 1J03A 1M59A 4B8NA 4HINA 1IETA 1LDCA 1LR6A 2OZ0A 1MJ4A 1JEXA 1AW3A 1CXYA 1I8CA 1X3XA 1I87A 2IBJA 1LJ0A 1AXXA 1I5UA 1LTDA 1BLVA 1M2MA 3MUSA 3X34A 1ICCA 1NX7A 1AQAA 1T0GA 3X32A 1HKOA 4HILA 1KBIA 2KEOA 1M20A 3KS0A 3NERA 1EUEA 2M33A 1EHBA 1U9MA 1AWPA 1LQXA 1ES1A 1SOXA 3LF5A 3X35A 1B5AA 1F03A 1BFXA 3OZZB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CYO A;  1F04 A;  2I96 A;  1LCO A;  1FCB A;  1SH4 A;  4X8Y A;  2AXX A;  1B5M A;  1J0Q A;  1MNY A;  1DO9 A;  1B5B A;  1IEU A;  1M2I A;  2I89 A;  1U9U A;  3X33 A;  1IB7 A;  1J03 A;  1M59 A;  4B8N A;  4HIN A;  1IET A;  1LDC A;  1LR6 A;  2OZ0 A;  1MJ4 A;  1JEX A;  1AW3 A;  1CXY A;  1I8C A;  1X3X A;  1I87 A;  2IBJ A;  1LJ0 A;  1AXX A;  1I5U A;  1LTD A;  1BLV A;  1M2M A;  3MUS A;  3X34 A;  1ICC A;  1NX7 A;  1AQA A;  1T0G A;  3X32 A;  1HKO A;  4HIL A;  1KBI A;  2KEO A;  1M20 A;  3KS0 A;  3NER A;  1EUE A;  2M33 A;  1EHB A;  1U9M A;  1AWP A;  1LQX A;  1ES1 A;  1SOX A;  3LF5 A;  3X35 A;  1B5A A;  1F03 A;  1BFX A;  3OZZ B; 
#chains in the Genus database with same CATH topology
 1CYO A;  1F04 A;  2I96 A;  1LCO A;  1FCB A;  1SH4 A;  4X8Y A;  2AXX A;  1B5M A;  1J0Q A;  1MNY A;  1DO9 A;  1B5B A;  1IEU A;  1M2I A;  2I89 A;  1U9U A;  3X33 A;  1IB7 A;  1J03 A;  1M59 A;  4B8N A;  4HIN A;  1IET A;  1LDC A;  1LR6 A;  2OZ0 A;  1MJ4 A;  1JEX A;  1AW3 A;  1CXY A;  1I8C A;  1X3X A;  1I87 A;  2IBJ A;  1LJ0 A;  1AXX A;  1I5U A;  1LTD A;  1BLV A;  1M2M A;  3MUS A;  3X34 A;  1ICC A;  1NX7 A;  1AQA A;  1T0G A;  3X32 A;  1HKO A;  4HIL A;  1KBI A;  2KEO A;  1M20 A;  3KS0 A;  3NER A;  1EUE A;  2M33 A;  1EHB A;  1U9M A;  1AWP A;  1LQX A;  1ES1 A;  1SOX A;  3LF5 A;  3X35 A;  1B5A A;  1F03 A;  1BFX A;  3OZZ B; 
#chains in the Genus database with same CATH homology
 1CYO A;  1F04 A;  2I96 A;  1LCO A;  1FCB A;  1SH4 A;  4X8Y A;  2AXX A;  1B5M A;  1J0Q A;  1MNY A;  1DO9 A;  1B5B A;  1IEU A;  1M2I A;  2I89 A;  1U9U A;  3X33 A;  1IB7 A;  1J03 A;  1M59 A;  4B8N A;  4HIN A;  1IET A;  1LDC A;  1LR6 A;  2OZ0 A;  1MJ4 A;  1JEX A;  1AW3 A;  1CXY A;  1I8C A;  1X3X A;  1I87 A;  2IBJ A;  1LJ0 A;  1AXX A;  1I5U A;  1LTD A;  1BLV A;  1M2M A;  3MUS A;  3X34 A;  1ICC A;  1NX7 A;  1AQA A;  1T0G A;  3X32 A;  1HKO A;  4HIL A;  1KBI A;  2KEO A;  1M20 A;  3KS0 A;  3NER A;  1EUE A;  2M33 A;  1EHB A;  1U9M A;  1AWP A;  1LQX A;  1ES1 A;  1SOX A;  3LF5 A;  3X35 A;  1B5A A;  1F03 A;  1BFX A;  3OZZ B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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