2M33A

Solution nmr structure of full-length oxidized microsomal rabbit cytochrome b5
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
104
structure length
104
Chain Sequence
MAAQSDKDVKYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPDDRSKLSKPMETLITTVD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title NMR structure of full-length mammalian cytochrome b5
rcsb
molecule tags Electron transport
source organism Oryctolagus cuniculus
molecule keywords Cytochrome b5
total genus 27
structure length 104
sequence length 104
ec nomenclature
pdb deposition date 2013-01-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 2m33A00
3X35A 1LJ0A 1CXYA 1J0QA 1M2IA 1LQXA 1CYOA 1I5UA 1J03A 1U9MA 1AXXA 1F04A 1IEUA 1M2MA 1B5AA 1AWPA 1NX7A 3OZZB 1FCBA 1LDCA 4X8YA 1M59A 3X33A 1U9UA 1SH4A 3MUSA 1AQAA 4B8NA 3X32A 1I87A 1EHBA 1LTDA 1BLVA 1M20A 2AXXA 3NERA 1F03A 1LCOA 1MJ4A 1B5BA 1T0GA 1ES1A 1IETA 1BFXA 1I8CA 1KBIA 2IBJA 1B5MA 1AW3A 2I89A 1EUEA 2I96A 1SOXA 3KS0A 4HINA 1X3XA 3LF5A 2OZ0A 3X34A 1DO9A 1JEXA 1HKOA 1LR6A 2KEOA 1MNYA 2M33A 1IB7A 1ICCA 4HILA
chains in the Genus database with same CATH superfamily
3X35A 1LJ0A 1CXYA 1J0QA 1M2IA 1LQXA 1CYOA 1I5UA 1J03A 1U9MA 1AXXA 1F04A 1IEUA 1M2MA 1B5AA 1AWPA 1NX7A 3OZZB 1FCBA 1LDCA 4X8YA 1M59A 3X33A 1U9UA 1SH4A 3MUSA 1AQAA 4B8NA 3X32A 1I87A 1EHBA 1LTDA 1BLVA 1M20A 2AXXA 3NERA 1F03A 1LCOA 1MJ4A 1B5BA 1T0GA 1ES1A 1IETA 1BFXA 1I8CA 1KBIA 2IBJA 1B5MA 1AW3A 2I89A 1EUEA 2I96A 1SOXA 3KS0A 4HINA 1X3XA 3LF5A 2OZ0A 3X34A 1DO9A 1JEXA 1HKOA 1LR6A 2KEOA 1MNYA 2M33A 1IB7A 1ICCA 4HILA
chains in the Genus database with same CATH topology
3X35A 1LJ0A 1CXYA 1J0QA 1M2IA 1LQXA 1CYOA 1I5UA 1J03A 1U9MA 1AXXA 1F04A 1IEUA 1M2MA 1B5AA 1AWPA 1NX7A 3OZZB 1FCBA 1LDCA 4X8YA 1M59A 3X33A 1U9UA 1SH4A 3MUSA 1AQAA 4B8NA 3X32A 1I87A 1EHBA 1LTDA 1BLVA 1M20A 2AXXA 3NERA 1F03A 1LCOA 1MJ4A 1B5BA 1T0GA 1ES1A 1IETA 1BFXA 1I8CA 1KBIA 2IBJA 1B5MA 1AW3A 2I89A 1EUEA 2I96A 1SOXA 3KS0A 4HINA 1X3XA 3LF5A 2OZ0A 3X34A 1DO9A 1JEXA 1HKOA 1LR6A 2KEOA 1MNYA 2M33A 1IB7A 1ICCA 4HILA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3X35 A;  1LJ0 A;  1CXY A;  1J0Q A;  1M2I A;  1LQX A;  1CYO A;  1I5U A;  1J03 A;  1U9M A;  1AXX A;  1F04 A;  1IEU A;  1M2M A;  1B5A A;  1AWP A;  1NX7 A;  3OZZ B;  1FCB A;  1LDC A;  4X8Y A;  1M59 A;  3X33 A;  1U9U A;  1SH4 A;  3MUS A;  1AQA A;  4B8N A;  3X32 A;  1I87 A;  1EHB A;  1LTD A;  1BLV A;  1M20 A;  2AXX A;  3NER A;  1F03 A;  1LCO A;  1MJ4 A;  1B5B A;  1T0G A;  1ES1 A;  1IET A;  1BFX A;  1I8C A;  1KBI A;  2IBJ A;  1B5M A;  1AW3 A;  2I89 A;  1EUE A;  2I96 A;  1SOX A;  3KS0 A;  4HIN A;  1X3X A;  3LF5 A;  2OZ0 A;  3X34 A;  1DO9 A;  1JEX A;  1HKO A;  1LR6 A;  2KEO A;  1MNY A;  2M33 A;  1IB7 A;  1ICC A;  4HIL A; 
#chains in the Genus database with same CATH topology
 3X35 A;  1LJ0 A;  1CXY A;  1J0Q A;  1M2I A;  1LQX A;  1CYO A;  1I5U A;  1J03 A;  1U9M A;  1AXX A;  1F04 A;  1IEU A;  1M2M A;  1B5A A;  1AWP A;  1NX7 A;  3OZZ B;  1FCB A;  1LDC A;  4X8Y A;  1M59 A;  3X33 A;  1U9U A;  1SH4 A;  3MUS A;  1AQA A;  4B8N A;  3X32 A;  1I87 A;  1EHB A;  1LTD A;  1BLV A;  1M20 A;  2AXX A;  3NER A;  1F03 A;  1LCO A;  1MJ4 A;  1B5B A;  1T0G A;  1ES1 A;  1IET A;  1BFX A;  1I8C A;  1KBI A;  2IBJ A;  1B5M A;  1AW3 A;  2I89 A;  1EUE A;  2I96 A;  1SOX A;  3KS0 A;  4HIN A;  1X3X A;  3LF5 A;  2OZ0 A;  3X34 A;  1DO9 A;  1JEX A;  1HKO A;  1LR6 A;  2KEO A;  1MNY A;  2M33 A;  1IB7 A;  1ICC A;  4HIL A; 
#chains in the Genus database with same CATH homology
 3X35 A;  1LJ0 A;  1CXY A;  1J0Q A;  1M2I A;  1LQX A;  1CYO A;  1I5U A;  1J03 A;  1U9M A;  1AXX A;  1F04 A;  1IEU A;  1M2M A;  1B5A A;  1AWP A;  1NX7 A;  3OZZ B;  1FCB A;  1LDC A;  4X8Y A;  1M59 A;  3X33 A;  1U9U A;  1SH4 A;  3MUS A;  1AQA A;  4B8N A;  3X32 A;  1I87 A;  1EHB A;  1LTD A;  1BLV A;  1M20 A;  2AXX A;  3NER A;  1F03 A;  1LCO A;  1MJ4 A;  1B5B A;  1T0G A;  1ES1 A;  1IET A;  1BFX A;  1I8C A;  1KBI A;  2IBJ A;  1B5M A;  1AW3 A;  2I89 A;  1EUE A;  2I96 A;  1SOX A;  3KS0 A;  4HIN A;  1X3X A;  3LF5 A;  2OZ0 A;  3X34 A;  1DO9 A;  1JEX A;  1HKO A;  1LR6 A;  2KEO A;  1MNY A;  2M33 A;  1IB7 A;  1ICC A;  4HIL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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