2M35A

Nmr study of k-ssm1a
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
52
structure length
52
Chain Sequence
TDDESSNKCAKTKRRENVCRVCGNRSGNDEYYSECCESDYRYHRCLDLLRNF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords k-Ssm1a
publication title NMR study of k-Ssm1a
rcsb
source organism Scolopendra subspinipes
molecule tags Toxin
total genus 14
structure length 52
sequence length 52
ec nomenclature
pdb deposition date 2013-01-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.60.50 Mainly Alpha Orthogonal Bundle Diphtheria Toxin Repressor; domain 2 Diphtheria Toxin Repressor; domain 2 2m35A00
2MUNA 2M35A 2MVTA 2MZ4A
chains in the Genus database with same CATH superfamily
5A2QR 1G3SA 4HX8A 1FWZA 1DPRA 2F5EA 2MZ4A 1FX7A 3GLXA 1ON2A 3J7AW 3A52A 2F5DA 5FLXR 2EV5A 1BI3A 2MVTA 1G3WA 1XCVA 2QQ9A 4HV6A 2P0TA 2ISZA 1B1BA 4HX4A 3J80R 1P92A 4O6JA 1BI1A 5IT9R 2QQBA 3R60A 2HYGD 1DDNA 2H09A 1BI0A 3J81R 2M35A 3R61A 4HX7A 2QQAA 2EV0A 2EV6A 3JAMR 2F5FA 2MUNA 2TDXA 1BI2A 1U8RA 1G3TA 2X98A 2HYFA 2DTRA 4O5VA 1F5TA 1C0WA 2F5CA 1RQ6A 4HV5A 1G3YA 1ON1A
chains in the Genus database with same CATH topology
2MZ4A 2X98A 2M35A 3A52A 2MUNA 2MVTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MUN A;  2M35 A;  2MVT A;  2MZ4 A; 
#chains in the Genus database with same CATH topology
 5A2Q R;  1G3S A;  4HX8 A;  1FWZ A;  1DPR A;  2F5E A;  2MZ4 A;  1FX7 A;  3GLX A;  1ON2 A;  3J7A W;  3A52 A;  2F5D A;  5FLX R;  2EV5 A;  1BI3 A;  2MVT A;  1G3W A;  1XCV A;  2QQ9 A;  4HV6 A;  2P0T A;  2ISZ A;  1B1B A;  4HX4 A;  3J80 R;  1P92 A;  4O6J A;  1BI1 A;  5IT9 R;  2QQB A;  3R60 A;  2HYG D;  1DDN A;  2H09 A;  1BI0 A;  3J81 R;  2M35 A;  3R61 A;  4HX7 A;  2QQA A;  2EV0 A;  2EV6 A;  3JAM R;  2F5F A;  2MUN A;  2TDX A;  1BI2 A;  1U8R A;  1G3T A;  2X98 A;  2HYF A;  2DTR A;  4O5V A;  1F5T A;  1C0W A;  2F5C A;  1RQ6 A;  4HV5 A;  1G3Y A;  1ON1 A; 
#chains in the Genus database with same CATH homology
 2MZ4 A;  2X98 A;  2M35 A;  3A52 A;  2MUN A;  2MVT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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