2M3TA

Solution-state nmr structure of wild-type human gamma(s)-crystallin
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
178
structure length
178
Chain Sequence
GSKTGTKITFYEDKNFQGRRYDCDCDCADFHTYLSRCNSIKVEGGTWAVYERPNFAGYMYILPQGEYPEYQRWMGLNDRLSSCRAVHLPSGGQYKIQIFEKGDFSGQMYETTEDCPSIMEQFHMREIHSCKVLEGVWIFYELPNYRGRQYLLDKKEYRKPIDWGAASPAVQSFRRIVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Beta-crystallin S
publication title Preferential and Specific Binding of Human alpha B-Crystallin to a Cataract-Related Variant of gamma S-Crystallin.
pubmed doi rcsb
source organism Homo sapiens
total genus 21
structure length 178
sequence length 178
ec nomenclature
pdb deposition date 2013-01-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00030 Crystall Beta/Gamma crystallin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 2m3tA02
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 2m3tA01
4PSRA 4JGFA 1ZWOA 2JDGA 3SO0A 1AMMA 1DSLA 3SO1A 3SNZA 2KP5A 2NBRA 4GR7A 1BD7A 2JDFA 5HT9A 4AKAA 2A5MA 3HZ2A 4PSPA 1A45A 1BLBA 3IAJA 2BB2A 2K1WA 1ZWMA 3HZBA 2M3TA 1HK0X 4FD9A 1HDFA 5HT8A 3QK3A 2K1XA 2G98A 4EL6A 4W9AA 3ENTA 3SNYA 1A7HA 4W9BA 3I9HA 3ENUA 1PRSA 1I5IA 1OKIA 4NI3A 1YHPA 1ZIRA 1GCSA 2BV2A 2KFBA 1E7NA 4GCRA 2B1OA 1GAMA 2M3CA 1HA4A 1NPSA 2V2UA 3LWKA 1PRRA 4IAUA 1ELPA 2M3UA 1ZGTA 1H4AX 3CW3A 1ZIEA 1YTQA 1M8UA 2DADA 1ZIQA 1A5DA 1AG4A
chains in the Genus database with same CATH superfamily
1DSLA 3SO1A 2NBRA 1BD7A 1G6EA 1A45A 3IAJA 3HZBA 1HK0X 2K1XA 4W9AA 4W9BA 3I9HA 1I5IA 1OKIA 1YHPA 1GCSA 1C01A 1E7NA 1BHUA 1H4AX 1WKTA 4PSRA 1ZWOA 3SNZA 5HT9A 3HZ2A 4PSPA 1BLBA 3QK3A 4EL6A 1A7HA 1F53A 1NPSA 1PRRA 4IAUA 1ELPA 2M3UA 1ZGTA 1GH5A 1ZIEA 2M3TA 1AG4A 3SO0A 2KP5A 3UJZA 4GR7A 2K1WA 4FD9A 1HDFA 2G98A 3SNYA 4NI3A 2BV2A 4GCRA 1GAMA 3LWKA 3CW3A 1YTQA 2DADA 1A5DA 4JGFA 2JDGA 1AMMA 2JDFA 4AKAA 2A5MA 2BB2A 1ZWMA 5HT8A 3ENTA 3ENUA 1PRSA 2KFBA 2B1OA 2V2UA 2M3CA 1HA4A 1M8UA 1ZIQA 1ZIRA
chains in the Genus database with same CATH topology
4PSRA 4JGFA 1ZWOA 2JDGA 3SO0A 1AMMA 1DSLA 3SO1A 3SNZA 2KP5A 2NBRA 4GR7A 1BD7A 2JDFA 5HT9A 4AKAA 2A5MA 3HZ2A 4PSPA 1A45A 1BLBA 3IAJA 2BB2A 2K1WA 1ZWMA 3HZBA 2M3TA 1HK0X 4FD9A 1HDFA 5HT8A 3QK3A 2K1XA 2G98A 4EL6A 4W9AA 3ENTA 3SNYA 1A7HA 4W9BA 3I9HA 3ENUA 1PRSA 1I5IA 1OKIA 4NI3A 1YHPA 1ZIRA 1GCSA 2BV2A 2KFBA 1E7NA 4GCRA 2B1OA 1GAMA 2M3CA 1HA4A 1NPSA 2V2UA 3LWKA 1PRRA 4IAUA 1ELPA 2M3UA 1ZGTA 1H4AX 3CW3A 1ZIEA 1YTQA 1M8UA 2DADA 1ZIQA 1A5DA 1AG4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PSR A;  4JGF A;  1ZWO A;  2JDG A;  3SO0 A;  1AMM A;  1DSL A;  3SO1 A;  3SNZ A;  2KP5 A;  2NBR A;  4GR7 A;  1BD7 A;  2JDF A;  5HT9 A;  4AKA A;  2A5M A;  3HZ2 A;  4PSP A;  1A45 A;  1BLB A;  3IAJ A;  2BB2 A;  2K1W A;  1ZWM A;  3HZB A;  2M3T A;  1HK0 X;  4FD9 A;  1HDF A;  5HT8 A;  3QK3 A;  2K1X A;  2G98 A;  4EL6 A;  4W9A A;  3ENT A;  3SNY A;  1A7H A;  4W9B A;  3I9H A;  3ENU A;  1PRS A;  1I5I A;  1OKI A;  4NI3 A;  1YHP A;  1ZIR A;  1GCS A;  2BV2 A;  2KFB A;  1E7N A;  4GCR A;  2B1O A;  1GAM A;  2M3C A;  1HA4 A;  1NPS A;  2V2U A;  3LWK A;  1PRR A;  4IAU A;  1ELP A;  2M3U A;  1ZGT A;  1H4A X;  3CW3 A;  1ZIE A;  1YTQ A;  1M8U A;  2DAD A;  1ZIQ A;  1A5D A;  1AG4 A; 
#chains in the Genus database with same CATH topology
 1DSL A;  3SO1 A;  2NBR A;  1BD7 A;  1G6E A;  1A45 A;  3IAJ A;  3HZB A;  1HK0 X;  2K1X A;  4W9A A;  4W9B A;  3I9H A;  1I5I A;  1OKI A;  1YHP A;  1GCS A;  1C01 A;  1E7N A;  1BHU A;  1H4A X;  1WKT A;  4PSR A;  1ZWO A;  3SNZ A;  5HT9 A;  3HZ2 A;  4PSP A;  1BLB A;  3QK3 A;  4EL6 A;  1A7H A;  1F53 A;  1NPS A;  1PRR A;  4IAU A;  1ELP A;  2M3U A;  1ZGT A;  1GH5 A;  1ZIE A;  2M3T A;  1AG4 A;  3SO0 A;  2KP5 A;  3UJZ A;  4GR7 A;  2K1W A;  4FD9 A;  1HDF A;  2G98 A;  3SNY A;  4NI3 A;  2BV2 A;  4GCR A;  1GAM A;  3LWK A;  3CW3 A;  1YTQ A;  2DAD A;  1A5D A;  4JGF A;  2JDG A;  1AMM A;  2JDF A;  4AKA A;  2A5M A;  2BB2 A;  1ZWM A;  5HT8 A;  3ENT A;  3ENU A;  1PRS A;  2KFB A;  2B1O A;  2V2U A;  2M3C A;  1HA4 A;  1M8U A;  1ZIQ A;  1ZIR A; 
#chains in the Genus database with same CATH homology
 4PSR A;  4JGF A;  1ZWO A;  2JDG A;  3SO0 A;  1AMM A;  1DSL A;  3SO1 A;  3SNZ A;  2KP5 A;  2NBR A;  4GR7 A;  1BD7 A;  2JDF A;  5HT9 A;  4AKA A;  2A5M A;  3HZ2 A;  4PSP A;  1A45 A;  1BLB A;  3IAJ A;  2BB2 A;  2K1W A;  1ZWM A;  3HZB A;  2M3T A;  1HK0 X;  4FD9 A;  1HDF A;  5HT8 A;  3QK3 A;  2K1X A;  2G98 A;  4EL6 A;  4W9A A;  3ENT A;  3SNY A;  1A7H A;  4W9B A;  3I9H A;  3ENU A;  1PRS A;  1I5I A;  1OKI A;  4NI3 A;  1YHP A;  1ZIR A;  1GCS A;  2BV2 A;  2KFB A;  1E7N A;  4GCR A;  2B1O A;  1GAM A;  2M3C A;  1HA4 A;  1NPS A;  2V2U A;  3LWK A;  1PRR A;  4IAU A;  1ELP A;  2M3U A;  1ZGT A;  1H4A X;  3CW3 A;  1ZIE A;  1YTQ A;  1M8U A;  2DAD A;  1ZIQ A;  1A5D A;  1AG4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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