2M7FA

The c-terminal region of disintegrin modulate its 3d conformation and cooperate with rgd loop in regulating integrins recognitions
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
71
structure length
71
Chain Sequence
GKECDCSSPENPCCDAATCKLRPGAQCGEGLCCEQCKFSRAGKICRIARGDWNDDRCTGQSADCPRNGLYG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Zinc metalloproteinase/disintegrin
publication title The C-terminal Region of Disintegrin Modulate its 3D Conformation and Cooperate with RGD Loop in Regulating Recognitions of Integrins
rcsb
source organism Calloselasma rhodostoma
total genus 6
structure length 71
sequence length 71
ec nomenclature ec 3.4.24.-:
pdb deposition date 2013-04-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.70.10 Few Secondary Structures Irregular Echistatin Disintegrin domain 2m7fA00
4R5RA 1MPZA 1TEJB 2W9OA 1Q7JA 2PJFA 1RMRA 1TEJA 1Q7IA 4R5UA 3C05B 1Z1XA 3UCIA 2MP51 2M7HA 1FVLA 2W9WA 2PJIA 1J2LA 4M4CA 1N4YA 3C05A 2W9VA 2LJVA 4RQGA 1RO3A 2M75A 2PJGA 2ECHA 2MOP1 1L3XA 2M7FA 3G5CA 2W9UA
chains in the Genus database with same CATH superfamily
4R5RA 1MPZA 1TEJB 2W9OA 1Q7JA 2PJFA 1RMRA 1TEJA 1Q7IA 4R5UA 3C05B 1Z1XA 3UCIA 2MP51 2M7HA 1FVLA 2W9WA 2PJIA 1J2LA 4M4CA 1N4YA 3C05A 2W9VA 2LJVA 4RQGA 1RO3A 2M75A 2PJGA 2ECHA 2MOP1 1L3XA 2M7FA 3G5CA 2W9UA
chains in the Genus database with same CATH topology
4R5RA 1MPZA 1TEJB 2W9OA 1Q7JA 2PJFA 1RMRA 1TEJA 1Q7IA 4R5UA 3C05B 1Z1XA 3UCIA 2MP51 2M7HA 1FVLA 2W9WA 2PJIA 1J2LA 4M4CA 1N4YA 3C05A 2W9VA 2LJVA 4RQGA 1RO3A 2M75A 2PJGA 2ECHA 2MOP1 1L3XA 2M7FA 3G5CA 2W9UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4R5R A;  1MPZ A;  1TEJ B;  2W9O A;  1Q7J A;  2PJF A;  1RMR A;  1TEJ A;  1Q7I A;  4R5U A;  3C05 B;  1Z1X A;  3UCI A;  2MP5 1;  2M7H A;  1FVL A;  2W9W A;  2PJI A;  1J2L A;  4M4C A;  1N4Y A;  3C05 A;  2W9V A;  2LJV A;  4RQG A;  1RO3 A;  2M75 A;  2PJG A;  2ECH A;  2MOP 1;  1L3X A;  2M7F A;  3G5C A;  2W9U A; 
#chains in the Genus database with same CATH topology
 4R5R A;  1MPZ A;  1TEJ B;  2W9O A;  1Q7J A;  2PJF A;  1RMR A;  1TEJ A;  1Q7I A;  4R5U A;  3C05 B;  1Z1X A;  3UCI A;  2MP5 1;  2M7H A;  1FVL A;  2W9W A;  2PJI A;  1J2L A;  4M4C A;  1N4Y A;  3C05 A;  2W9V A;  2LJV A;  4RQG A;  1RO3 A;  2M75 A;  2PJG A;  2ECH A;  2MOP 1;  1L3X A;  2M7F A;  3G5C A;  2W9U A; 
#chains in the Genus database with same CATH homology
 4R5R A;  1MPZ A;  1TEJ B;  2W9O A;  1Q7J A;  2PJF A;  1RMR A;  1TEJ A;  1Q7I A;  4R5U A;  3C05 B;  1Z1X A;  3UCI A;  2MP5 1;  2M7H A;  1FVL A;  2W9W A;  2PJI A;  1J2L A;  4M4C A;  1N4Y A;  3C05 A;  2W9V A;  2LJV A;  4RQG A;  1RO3 A;  2M75 A;  2PJG A;  2ECH A;  2MOP 1;  1L3X A;  2M7F A;  3G5C A;  2W9U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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