2MGVA

Nmr structure of pasta domain of pona2 from mycobacterium tuberculosis
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
65
structure length
65
Chain Sequence
GSRVPSVAGLDVDAARQRLKDAGFQVADQTNSVNSSAKYGEVVGTSPSGQTIPGSIVTIQISNGI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Penicillin binding protein
molecule keywords Bifunctional membrane-associated penicillin-binding protein
publication title Structural and binding properties of the PASTA domain of PonA2, a key penicillin binding protein from Mycobacterium tuberculosis.
pubmed doi rcsb
source organism Mycobacterium tuberculosis
total genus 9
structure length 65
sequence length 65
ec nomenclature
pdb deposition date 2013-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03793 PASTA PASTA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.10.20 Alpha Beta 2-Layer Sandwich Trypsin Inhibitor V; Chain A Trypsin Inhibitor V; Chain A 2mgvA00
5E10A 2MGVA 2KUDA 2KUEA 3M9GA 5E0ZA 3PY9A 5E0YA 3OUVA 2KUIA 2KUFA
chains in the Genus database with same CATH superfamily
1Y4DI 1Y3CI 1Y3FI 2SECI 4B2CB 5FFNI 4B2AB 3TECI 1YPAI 1Y3DI 1Y4AI 1SBNI 1Y34I 2KUIA 1Y33I 2SNII 1Y48I 5E10A 2MGVA 1CISA 2CI2I 1CSEI 5E0ZA 1MITA 1TM7I 1TO2I 3PY9A 4H4FB 4B2BB 2KUFA 1HYMA 1VBWA 1Y3BI 3RDYA 1YPCI 2KUDA 3M9GA 4B1TB 2TECI 1TO1I 1TM5I 5FBZB 1LW6I 3W0DA 1EGLA 1MEEI 1SIBI 1Y1KI 1ACBI 1TMGI 1TINA 1TM1I 1DWMA 3CI2A 2KUEA 3W0EA 1YPBI 3RDZC 1COAI 1TECI 5E0YA 3OUVA 1TM3I 1TM4I
chains in the Genus database with same CATH topology
5E10A 2MGVA 2KUDA 2KUEA 3M9GA 5E0ZA 3PY9A 5E0YA 3OUVA 2KUIA 2KUFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5E10 A;  2MGV A;  2KUD A;  2KUE A;  3M9G A;  5E0Z A;  3PY9 A;  5E0Y A;  3OUV A;  2KUI A;  2KUF A; 
#chains in the Genus database with same CATH topology
 1Y4D I;  1Y3C I;  1Y3F I;  2SEC I;  4B2C B;  5FFN I;  4B2A B;  3TEC I;  1YPA I;  1Y3D I;  1Y4A I;  1SBN I;  1Y34 I;  2KUI A;  1Y33 I;  2SNI I;  1Y48 I;  5E10 A;  2MGV A;  1CIS A;  2CI2 I;  1CSE I;  5E0Z A;  1MIT A;  1TM7 I;  1TO2 I;  3PY9 A;  4H4F B;  4B2B B;  2KUF A;  1HYM A;  1VBW A;  1Y3B I;  3RDY A;  1YPC I;  2KUD A;  3M9G A;  4B1T B;  2TEC I;  1TO1 I;  1TM5 I;  5FBZ B;  1LW6 I;  3W0D A;  1EGL A;  1MEE I;  1SIB I;  1Y1K I;  1ACB I;  1TMG I;  1TIN A;  1TM1 I;  1DWM A;  3CI2 A;  2KUE A;  3W0E A;  1YPB I;  3RDZ C;  1COA I;  1TEC I;  5E0Y A;  3OUV A;  1TM3 I;  1TM4 I; 
#chains in the Genus database with same CATH homology
 5E10 A;  2MGV A;  2KUD A;  2KUE A;  3M9G A;  5E0Z A;  3PY9 A;  5E0Y A;  3OUV A;  2KUI A;  2KUF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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