2MI7A

Solution nmr structure of alpha3y
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
67
structure length
67
Chain Sequence
GSRVKALEEKVKALEEKVKALGGGGRIEELKKKYEELKKKIEELGGGGEVKKVEEEVKKLEEEIKKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords de novo protein a3Y
publication title Photochemical tyrosine oxidation in the structurally well-defined alpha 3Y protein: proton-coupled electron transfer and a long-lived tyrosine radical.
pubmed doi rcsb
source organism Synthetic construct
molecule tags De novo protein
total genus 22
structure length 67
sequence length 67
ec nomenclature
pdb deposition date 2013-12-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.70 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Designed single chain three-helix bundle 2mi7A00
1LQ7A 2ZXQA 2LXYA 2MI7A
chains in the Genus database with same CATH superfamily
2EX3B 1X03A 3T47A 2YL6A 4H6HA 4AKVA 2NCZA 3EJSA 2OW6A 4ATMA 3RV1A 4JNEA 2GAFD 3UITA 4F01A 1SU8A 4EZXA 1DKYA 5TKYA 4R5LA 2RAIA 4EZSA 3HAJA 3BVTA 3CZNA 3L3PA 2RAJA 2ND1A 2OZNB 3F7WA 1GN9A 4EZQA 2OBMA 2YI8A 3VKHA 3DX4A 4R5KA 1TQUA 1SUFA 1OA1A 1QX1A 4EZYA 4AZCA 2YLAA 3DPPA 1O7DC 3CAZA 3PLTA 3CZSA 3HAHA 2YL9A 3D2EA 1W9MA 4JWIA 2GF4A 4IWOA 4NSWA 2F18A 4AVMA 3C7NA 2Z0NA 2V0OA 3BVVA 5FLEX 1I4LA 1ZWWA 2WYIA 3GI7A 3LLLA 2Z0OA 3ER8C 1HTYA 1I4TA 2F7QA 4JWDA 1R34A 4R5JA 2X3VA 1TQVA 5C5BA 3ERCC 2YL8A 3LMFA 4F00A 2LXYA 2PMRA 1OAOA 4AZHA 4JNFA 1E9VA 2EWFA 3Q0KA 2EFLA 3EJPA 4FM3A 1PS3A 3I04A 1R33A 4HYBA 1GNLA 3T49A 3EJUA 2EFKA 3DPOA 3DYTA 3ER9B 2JNKA 1TQTA 2N3KA 2ND0A 4B9QA 4BNEA 1U00A 3BUPA 2Q12A 3CV5A 2PY6A 1QWUA 2X3WA 2QKWA 2ELBA 2YIVX 4EZZA 1Y2OA 3O3OB 4D8JA 3ABHA 3FD9A 4AZ7A 2YKTA 2D1LA 2QFFA 4WPEA 3VEAA 2X3XA 4R5GA 4NPHA 2F7OA 1HWWA 1I4DA 4JL9A 3KAWA 3D2FA 4JN4A 4M0MA 2WINM 4EZPA 2OO2A 1I49A 4AZ6A 2MI7A 4AZGA 3I2WA 3SYVA 2X5CA 3OK8A 4H6IA 4HR1A 3BVXA 1E2UA 4EZRA 3CVRA 2LM0A 3DPQA 3BUDA 4AZCB 2KHOA 3BUIA 4IM2A 2D4CA 4I1QA 2F1BA 1MJGA 3BVWA 4HR1B 3T46A 1DKZA 4IM3A 4IW0A 4EZWA 3BUQA 4AZ5A 3DX0A 2O0I1 3DX2A 1YWMA 5FIGA 2WYHA 3KAVA 1UPXA 2F1AA 3LVTA 3I39X 4UDYX 2YI9A 3DX1A 3DDFA 5C5BB 4EZTA 3D52A 1OA0A 3G9GA 1ZYLA 4KIKA 3D4YA 3QWEA 1TQWA 2ZXQA 3BVUA 2FYVA 4HY9A 2F7RA 3EJQA 3O3MB 4JWCA 2OBLA 4KIKB 3T48A 2F7PA 4DYLA 3ZEDA 4R5IA 4JLCA 3RV0A 1DKXA 3QE6A 4EZOA 1E1DA 2QXLA 1TQSA 2FICA 2Z0VA 5KBPA 3QNJA 3B52X 3BLBA 5E84A 3B51X 1SU6A 3OHXM 2RAKA 3KDRA 2YIBA 3Q84A 4AZBA 2Q13A 4UDXX 2JNSA 4DCNC 3D51A 2YIAA 3DDGA 3O3NB 2YLLA 3QA8A 4EZUA 3CKDA 3EJTA 3VEBA 1SU7A 3L3OM 3OWGA 3D4ZA 4IWQA 3B53X 4FZSA 4NQIA 4WPCA 1QWNA 1X04A 2Z8YA 3DX3A 3SOGA 1JQKA 3RPMA 3D50A 3QNIA 1URUA 3BUBA 1HXKA 2GA9D 4FZPA 4E81A 4AZIA 3T4AG 1O7DB 4EZVA 4IM0A 4E3CA 3EJRA 2YL5A 2OW7A 3M3WA 4JWEA 1LQ7A 2ALWA 3ACOA 1R5EA 4H8SA 1WDZA 4G6QA 2C08A 2RT6A 4FZOA 3HAIA 4IWPA 3I01A 1GNTA 4EZNA 3A98A 4PO2A
chains in the Genus database with same CATH topology
1LQ7A 2ZXQA 2LXYA 2MI7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LQ7 A;  2ZXQ A;  2LXY A;  2MI7 A; 
#chains in the Genus database with same CATH topology
 2EX3 B;  1X03 A;  3T47 A;  2YL6 A;  4H6H A;  4AKV A;  2NCZ A;  3EJS A;  2OW6 A;  4ATM A;  3RV1 A;  4JNE A;  2GAF D;  3UIT A;  4F01 A;  1SU8 A;  4EZX A;  1DKY A;  5TKY A;  4R5L A;  2RAI A;  4EZS A;  3HAJ A;  3BVT A;  3CZN A;  3L3P A;  2RAJ A;  2ND1 A;  2OZN B;  3F7W A;  1GN9 A;  4EZQ A;  2OBM A;  2YI8 A;  3VKH A;  3DX4 A;  4R5K A;  1TQU A;  1SUF A;  1OA1 A;  1QX1 A;  4EZY A;  4AZC A;  2YLA A;  3DPP A;  1O7D C;  3CAZ A;  3PLT A;  3CZS A;  3HAH A;  2YL9 A;  3D2E A;  1W9M A;  4JWI A;  2GF4 A;  4IWO A;  4NSW A;  2F18 A;  4AVM A;  3C7N A;  2Z0N A;  2V0O A;  3BVV A;  5FLE X;  1I4L A;  1ZWW A;  2WYI A;  3GI7 A;  3LLL A;  2Z0O A;  3ER8 C;  1HTY A;  1I4T A;  2F7Q A;  4JWD A;  1R34 A;  4R5J A;  2X3V A;  1TQV A;  5C5B A;  3ERC C;  2YL8 A;  3LMF A;  4F00 A;  2LXY A;  2PMR A;  1OAO A;  4AZH A;  4JNF A;  1E9V A;  2EWF A;  3Q0K A;  2EFL A;  3EJP A;  4FM3 A;  1PS3 A;  3I04 A;  1R33 A;  4HYB A;  1GNL A;  3T49 A;  3EJU A;  2EFK A;  3DPO A;  3DYT A;  3ER9 B;  2JNK A;  1TQT A;  2N3K A;  2ND0 A;  4B9Q A;  4BNE A;  1U00 A;  3BUP A;  2Q12 A;  3CV5 A;  2PY6 A;  1QWU A;  2X3W A;  2QKW A;  2ELB A;  2YIV X;  4EZZ A;  1Y2O A;  3O3O B;  4D8J A;  3ABH A;  3FD9 A;  4AZ7 A;  2YKT A;  2D1L A;  2QFF A;  4WPE A;  3VEA A;  2X3X A;  4R5G A;  4NPH A;  2F7O A;  1HWW A;  1I4D A;  4JL9 A;  3KAW A;  3D2F A;  4JN4 A;  4M0M A;  2WIN M;  4EZP A;  2OO2 A;  1I49 A;  4AZ6 A;  2MI7 A;  4AZG A;  3I2W A;  3SYV A;  2X5C A;  3OK8 A;  4H6I A;  4HR1 A;  3BVX A;  1E2U A;  4EZR A;  3CVR A;  2LM0 A;  3DPQ A;  3BUD A;  4AZC B;  2KHO A;  3BUI A;  4IM2 A;  2D4C A;  4I1Q A;  2F1B A;  1MJG A;  3BVW A;  4HR1 B;  3T46 A;  1DKZ A;  4IM3 A;  4IW0 A;  4EZW A;  3BUQ A;  4AZ5 A;  3DX0 A;  2O0I 1;  3DX2 A;  1YWM A;  5FIG A;  2WYH A;  3KAV A;  1UPX A;  2F1A A;  3LVT A;  3I39 X;  4UDY X;  2YI9 A;  3DX1 A;  3DDF A;  5C5B B;  4EZT A;  3D52 A;  1OA0 A;  3G9G A;  1ZYL A;  4KIK A;  3D4Y A;  3QWE A;  1TQW A;  2ZXQ A;  3BVU A;  2FYV A;  4HY9 A;  2F7R A;  3EJQ A;  3O3M B;  4JWC A;  2OBL A;  4KIK B;  3T48 A;  2F7P A;  4DYL A;  3ZED A;  4R5I A;  4JLC A;  3RV0 A;  1DKX A;  3QE6 A;  4EZO A;  1E1D A;  2QXL A;  1TQS A;  2FIC A;  2Z0V A;  5KBP A;  3QNJ A;  3B52 X;  3BLB A;  5E84 A;  3B51 X;  1SU6 A;  3OHX M;  2RAK A;  3KDR A;  2YIB A;  3Q84 A;  4AZB A;  2Q13 A;  4UDX X;  2JNS A;  4DCN C;  3D51 A;  2YIA A;  3DDG A;  3O3N B;  2YLL A;  3QA8 A;  4EZU A;  3CKD A;  3EJT A;  3VEB A;  1SU7 A;  3L3O M;  3OWG A;  3D4Z A;  4IWQ A;  3B53 X;  4FZS A;  4NQI A;  4WPC A;  1QWN A;  1X04 A;  2Z8Y A;  3DX3 A;  3SOG A;  1JQK A;  3RPM A;  3D50 A;  3QNI A;  1URU A;  3BUB A;  1HXK A;  2GA9 D;  4FZP A;  4E81 A;  4AZI A;  3T4A G;  1O7D B;  4EZV A;  4IM0 A;  4E3C A;  3EJR A;  2YL5 A;  2OW7 A;  3M3W A;  4JWE A;  1LQ7 A;  2ALW A;  3ACO A;  1R5E A;  4H8S A;  1WDZ A;  4G6Q A;  2C08 A;  2RT6 A;  4FZO A;  3HAI A;  4IWP A;  3I01 A;  1GNT A;  4EZN A;  3A98 A;  4PO2 A; 
#chains in the Genus database with same CATH homology
 1LQ7 A;  2ZXQ A;  2LXY A;  2MI7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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