2MJYA

Solution structure of synthetic mamba-1 peptide
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
57
structure length
57
Chain Sequence
LKCYQHGKVVTCHRDMKFCYHNTGMPFRNLKLILQGCSSSCSETENNKCCSTDRCNK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title One-pot hydrazide-based native chemical ligation for efficient chemical synthesis and structure determination of toxin Mambalgin-1
pubmed doi rcsb
molecule tags Toxin
molecule keywords Mambalgin-1
total genus 8
structure length 57
sequence length 57
ec nomenclature
pdb deposition date 2014-01-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 2mjyA00
4ZQYA 2BHIA 1KBTA 1LX5B 2FD6U 1YWHA 3VTSA 2K3GA 3FEVA 1IDHA 1CB9A 4LFTA 1CREA 1NYUA 3U73U 1IJCA 1CODA 2QJBC 3NDSA 1IDIA 5DO6A 2JQPA 5EBXA 1FASA 2CRTA 2H7ZA 1H0JA 4AEAA 2X8BB 1TFSA 2QJAC 1FF4A 1CDSA 1RL5A 1HC9A 2H64B 1NYSA 2H7ZB 2MUOA 3KFDI 2H5FA 3BT2U 2CCXA 2UWRA 1CRFA 1LXHA 2LCRA 2PJYB 1HC9B 1KC4A 1LXGA 6EBXA 5DU1A 1IQ9A 1REWC 1IK8A 2LA1A 1IDGA 4UY2C 2MJ0A 2MUPA 1CXOA 2JVEA 1M9ZA 2OFSA 2BTXA 3ERAA 3HH7A 1MAHF 2NBTA 1ERAA 1ERGA 1JE9A 1BTEA 4XJJA 2GOOC 1TXAA 1CDQA 2QJ9C 2MFAA 3BT1U 2VLWA 4DO8A 1JGKA 1XT3A 1CVOA 1JBDA 1QKDA 1HAAA 1NXBA 3LAQU 1BXPA 1DRSA 1QM7A 1F8UB 1KTZB 4P7UA 2GOOB 2UX2A 3EVSC 1F94A 1CHVS 1KS6A 1S4YA 3PLCA 1PLOA 1FFJA 1LJZA 1UG4A 2J8BA 1CDTA 1FSSB 5DZ5A 1CCQA 1TGXA 4HQPF 2HLRA 3KFDE 2ABXA 1FSCA 1CTXA 2QC1A 4RUDA 1HAJA 3U74U 2I9BE 2H8UA 1KU6B 1TXBA 2CRSA 1ONJA 2ERAA 1MR6A 1QKEA 5IMTD 4QTIU 1VB0A 1HOYA 1IKCA 4EY8B 1COEA 4BDTB 1FRAA 1ES7B 1KXIA 2CDXA 2H62D 2H64C 1KBSA 3EBXA 1V6PA 4OM5A 2MHYA 1CXNA 2N99A 1W6BA 1ZADA 1KL8A 3NEQA 2PJYC 2CTXA 1NTXA 1RGJA 1L4WA 3QB4B 2L5SA 4FAOE 1G6MA 4OM4A 4FAOC 1IDLA 1NTNA 4IYEA 2L03A 1NORA 4BIKB 3NH7A 1I02A 1ABTA 1NEAA 2H62C 5IMYC 2MJYA 1KBAA 1CDRA 1B41B 1KFHA 1LSIA 2MJ4A 2HLQA
chains in the Genus database with same CATH superfamily
4ZQYA 2BHIA 1KBTA 1LX5B 2FD6U 1YWHA 3VTSA 2K3GA 3FEVA 1IDHA 1CB9A 4LFTA 1CREA 1NYUA 3U73U 1IJCA 1CODA 2QJBC 3NDSA 1IDIA 5DO6A 2JQPA 5EBXA 1FASA 2CRTA 2H7ZA 1H0JA 4AEAA 2X8BB 1TFSA 2QJAC 1FF4A 1CDSA 1RL5A 1HC9A 2H64B 1NYSA 2H7ZB 2MUOA 3KFDI 2H5FA 3BT2U 2CCXA 2UWRA 1CRFA 1LXHA 2LCRA 2PJYB 1HC9B 1KC4A 1LXGA 6EBXA 5DU1A 1IQ9A 1REWC 1IK8A 2LA1A 1IDGA 4UY2C 2MJ0A 2MUPA 1CXOA 2JVEA 1M9ZA 2OFSA 2BTXA 3ERAA 3HH7A 1MAHF 2NBTA 1ERAA 1ERGA 1JE9A 1BTEA 4XJJA 2GOOC 1TXAA 1CDQA 2QJ9C 2MFAA 3BT1U 2VLWA 4DO8A 1JGKA 1XT3A 1CVOA 1JBDA 1QKDA 1HAAA 1NXBA 3LAQU 1BXPA 1DRSA 1QM7A 1F8UB 1KTZB 4P7UA 2GOOB 2UX2A 3EVSC 1F94A 1CHVS 1KS6A 1S4YA 3PLCA 1PLOA 1FFJA 1LJZA 1UG4A 2J8BA 1CDTA 1FSSB 5DZ5A 1CCQA 1TGXA 4HQPF 2HLRA 3KFDE 2ABXA 1FSCA 1CTXA 2QC1A 4RUDA 1HAJA 3U74U 2I9BE 2H8UA 1KU6B 1TXBA 2CRSA 1ONJA 2ERAA 1MR6A 1QKEA 5IMTD 4QTIU 1VB0A 1HOYA 4KSNA 4EY8B 1IKCA 1COEA 4BDTB 1FRAA 1ES7B 1KXIA 2CDXA 2H62D 2H64C 1KBSA 3EBXA 1V6PA 4OM5A 2MHYA 1CXNA 2N99A 1W6BA 1ZADA 1KL8A 3NEQA 2PJYC 2CTXA 1NTXA 1RGJA 1L4WA 3QB4B 2L5SA 4FAOE 1G6MA 4OM4A 4FAOC 1IDLA 1NTNA 4IYEA 2L03A 1NORA 4BIKB 3NH7A 1I02A 1ABTA 1NEAA 2H62C 5IMYC 2MJYA 1KBAA 1CDRA 1B41B 1KFHA 1LSIA 2MJ4A 2HLQA
chains in the Genus database with same CATH topology
4ZQYA 2BHIA 1KBTA 1LX5B 2FD6U 1YWHA 3VTSA 2K3GA 3FEVA 1IDHA 1CB9A 4LFTA 1CREA 1NYUA 3U73U 1IJCA 1CODA 2QJBC 3NDSA 1IDIA 5DO6A 2JQPA 5EBXA 1FASA 2CRTA 2H7ZA 1H0JA 4AEAA 2X8BB 1TFSA 2QJAC 1FF4A 1CDSA 1RL5A 1HC9A 2H64B 1NYSA 2H7ZB 2MUOA 3KFDI 2H5FA 3BT2U 2CCXA 2UWRA 1CRFA 1LXHA 2LCRA 2PJYB 1HC9B 1KC4A 1LXGA 6EBXA 5DU1A 1IQ9A 1REWC 1IK8A 2LA1A 1IDGA 4UY2C 2MJ0A 2MUPA 1CXOA 2JVEA 1M9ZA 2OFSA 2BTXA 3ERAA 3HH7A 1MAHF 2NBTA 1ERAA 1ERGA 1JE9A 1BTEA 4XJJA 2GOOC 1TXAA 1CDQA 2QJ9C 2MFAA 3BT1U 2VLWA 4DO8A 1JGKA 1XT3A 1CVOA 1JBDA 1QKDA 1HAAA 1NXBA 3LAQU 1BXPA 1DRSA 1QM7A 1F8UB 1KTZB 4P7UA 2GOOB 2UX2A 3EVSC 1F94A 1CHVS 1KS6A 1S4YA 3PLCA 1PLOA 1FFJA 1LJZA 1UG4A 2J8BA 1CDTA 1FSSB 5DZ5A 1CCQA 1TGXA 4HQPF 2HLRA 3KFDE 2ABXA 1FSCA 1CTXA 2QC1A 4RUDA 1HAJA 3U74U 2I9BE 2H8UA 1KU6B 1TXBA 2CRSA 1ONJA 2ERAA 1MR6A 1QKEA 5IMTD 4QTIU 1VB0A 1HOYA 4KSNA 4EY8B 1IKCA 1COEA 4BDTB 1FRAA 1ES7B 1KXIA 2CDXA 2H62D 2H64C 1KBSA 3EBXA 1V6PA 4OM5A 2MHYA 1CXNA 2N99A 1W6BA 1ZADA 1KL8A 3NEQA 2PJYC 2CTXA 1NTXA 1RGJA 1L4WA 3QB4B 2L5SA 4FAOE 1G6MA 4OM4A 4FAOC 1IDLA 1NTNA 4IYEA 2L03A 1NORA 4BIKB 3NH7A 1I02A 1ABTA 1NEAA 2H62C 5IMYC 2MJYA 1KBAA 1CDRA 1B41B 1KFHA 1LSIA 2MJ4A 2HLQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZQY A;  2BHI A;  1KBT A;  1LX5 B;  2FD6 U;  1YWH A;  3VTS A;  2K3G A;  3FEV A;  1IDH A;  1CB9 A;  4LFT A;  1CRE A;  1NYU A;  3U73 U;  1IJC A;  1COD A;  2QJB C;  3NDS A;  1IDI A;  5DO6 A;  2JQP A;  5EBX A;  1FAS A;  2CRT A;  2H7Z A;  1H0J A;  4AEA A;  2X8B B;  1TFS A;  2QJA C;  1FF4 A;  1CDS A;  1RL5 A;  1HC9 A;  2H64 B;  1NYS A;  2H7Z B;  2MUO A;  3KFD I;  2H5F A;  3BT2 U;  2CCX A;  2UWR A;  1CRF A;  1LXH A;  2LCR A;  2PJY B;  1HC9 B;  1KC4 A;  1LXG A;  6EBX A;  5DU1 A;  1IQ9 A;  1REW C;  1IK8 A;  2LA1 A;  1IDG A;  4UY2 C;  2MJ0 A;  2MUP A;  1CXO A;  2JVE A;  1M9Z A;  2OFS A;  2BTX A;  3ERA A;  3HH7 A;  1MAH F;  2NBT A;  1ERA A;  1ERG A;  1JE9 A;  1BTE A;  4XJJ A;  2GOO C;  1TXA A;  1CDQ A;  2QJ9 C;  2MFA A;  3BT1 U;  2VLW A;  4DO8 A;  1JGK A;  1XT3 A;  1CVO A;  1JBD A;  1QKD A;  1HAA A;  1NXB A;  3LAQ U;  1BXP A;  1DRS A;  1QM7 A;  1F8U B;  1KTZ B;  4P7U A;  2GOO B;  2UX2 A;  3EVS C;  1F94 A;  1CHV S;  1KS6 A;  1S4Y A;  3PLC A;  1PLO A;  1FFJ A;  1LJZ A;  1UG4 A;  2J8B A;  1CDT A;  1FSS B;  5DZ5 A;  1CCQ A;  1TGX A;  4HQP F;  2HLR A;  3KFD E;  2ABX A;  1FSC A;  1CTX A;  2QC1 A;  4RUD A;  1HAJ A;  3U74 U;  2I9B E;  2H8U A;  1KU6 B;  1TXB A;  2CRS A;  1ONJ A;  2ERA A;  1MR6 A;  1QKE A;  5IMT D;  4QTI U;  1VB0 A;  1HOY A;  1IKC A;  4EY8 B;  1COE A;  4BDT B;  1FRA A;  1ES7 B;  1KXI A;  2CDX A;  2H62 D;  2H64 C;  1KBS A;  3EBX A;  1V6P A;  4OM5 A;  2MHY A;  1CXN A;  2N99 A;  1W6B A;  1ZAD A;  1KL8 A;  3NEQ A;  2PJY C;  2CTX A;  1NTX A;  1RGJ A;  1L4W A;  3QB4 B;  2L5S A;  4FAO E;  1G6M A;  4OM4 A;  4FAO C;  1IDL A;  1NTN A;  4IYE A;  2L03 A;  1NOR A;  4BIK B;  3NH7 A;  1I02 A;  1ABT A;  1NEA A;  2H62 C;  5IMY C;  2MJY A;  1KBA A;  1CDR A;  1B41 B;  1KFH A;  1LSI A;  2MJ4 A;  2HLQ A; 
#chains in the Genus database with same CATH topology
 4ZQY A;  2BHI A;  1KBT A;  1LX5 B;  2FD6 U;  1YWH A;  3VTS A;  2K3G A;  3FEV A;  1IDH A;  1CB9 A;  4LFT A;  1CRE A;  1NYU A;  3U73 U;  1IJC A;  1COD A;  2QJB C;  3NDS A;  1IDI A;  5DO6 A;  2JQP A;  5EBX A;  1FAS A;  2CRT A;  2H7Z A;  1H0J A;  4AEA A;  2X8B B;  1TFS A;  2QJA C;  1FF4 A;  1CDS A;  1RL5 A;  1HC9 A;  2H64 B;  1NYS A;  2H7Z B;  2MUO A;  3KFD I;  2H5F A;  3BT2 U;  2CCX A;  2UWR A;  1CRF A;  1LXH A;  2LCR A;  2PJY B;  1HC9 B;  1KC4 A;  1LXG A;  6EBX A;  5DU1 A;  1IQ9 A;  1REW C;  1IK8 A;  2LA1 A;  1IDG A;  4UY2 C;  2MJ0 A;  2MUP A;  1CXO A;  2JVE A;  1M9Z A;  2OFS A;  2BTX A;  3ERA A;  3HH7 A;  1MAH F;  2NBT A;  1ERA A;  1ERG A;  1JE9 A;  1BTE A;  4XJJ A;  2GOO C;  1TXA A;  1CDQ A;  2QJ9 C;  2MFA A;  3BT1 U;  2VLW A;  4DO8 A;  1JGK A;  1XT3 A;  1CVO A;  1JBD A;  1QKD A;  1HAA A;  1NXB A;  3LAQ U;  1BXP A;  1DRS A;  1QM7 A;  1F8U B;  1KTZ B;  4P7U A;  2GOO B;  2UX2 A;  3EVS C;  1F94 A;  1CHV S;  1KS6 A;  1S4Y A;  3PLC A;  1PLO A;  1FFJ A;  1LJZ A;  1UG4 A;  2J8B A;  1CDT A;  1FSS B;  5DZ5 A;  1CCQ A;  1TGX A;  4HQP F;  2HLR A;  3KFD E;  2ABX A;  1FSC A;  1CTX A;  2QC1 A;  4RUD A;  1HAJ A;  3U74 U;  2I9B E;  2H8U A;  1KU6 B;  1TXB A;  2CRS A;  1ONJ A;  2ERA A;  1MR6 A;  1QKE A;  5IMT D;  4QTI U;  1VB0 A;  1HOY A;  4KSN A;  4EY8 B;  1IKC A;  1COE A;  4BDT B;  1FRA A;  1ES7 B;  1KXI A;  2CDX A;  2H62 D;  2H64 C;  1KBS A;  3EBX A;  1V6P A;  4OM5 A;  2MHY A;  1CXN A;  2N99 A;  1W6B A;  1ZAD A;  1KL8 A;  3NEQ A;  2PJY C;  2CTX A;  1NTX A;  1RGJ A;  1L4W A;  3QB4 B;  2L5S A;  4FAO E;  1G6M A;  4OM4 A;  4FAO C;  1IDL A;  1NTN A;  4IYE A;  2L03 A;  1NOR A;  4BIK B;  3NH7 A;  1I02 A;  1ABT A;  1NEA A;  2H62 C;  5IMY C;  2MJY A;  1KBA A;  1CDR A;  1B41 B;  1KFH A;  1LSI A;  2MJ4 A;  2HLQ A; 
#chains in the Genus database with same CATH homology
 4ZQY A;  2BHI A;  1KBT A;  1LX5 B;  2FD6 U;  1YWH A;  3VTS A;  2K3G A;  3FEV A;  1IDH A;  1CB9 A;  4LFT A;  1CRE A;  1NYU A;  3U73 U;  1IJC A;  1COD A;  2QJB C;  3NDS A;  1IDI A;  5DO6 A;  2JQP A;  5EBX A;  1FAS A;  2CRT A;  2H7Z A;  1H0J A;  4AEA A;  2X8B B;  1TFS A;  2QJA C;  1FF4 A;  1CDS A;  1RL5 A;  1HC9 A;  2H64 B;  1NYS A;  2H7Z B;  2MUO A;  3KFD I;  2H5F A;  3BT2 U;  2CCX A;  2UWR A;  1CRF A;  1LXH A;  2LCR A;  2PJY B;  1HC9 B;  1KC4 A;  1LXG A;  6EBX A;  5DU1 A;  1IQ9 A;  1REW C;  1IK8 A;  2LA1 A;  1IDG A;  4UY2 C;  2MJ0 A;  2MUP A;  1CXO A;  2JVE A;  1M9Z A;  2OFS A;  2BTX A;  3ERA A;  3HH7 A;  1MAH F;  2NBT A;  1ERA A;  1ERG A;  1JE9 A;  1BTE A;  4XJJ A;  2GOO C;  1TXA A;  1CDQ A;  2QJ9 C;  2MFA A;  3BT1 U;  2VLW A;  4DO8 A;  1JGK A;  1XT3 A;  1CVO A;  1JBD A;  1QKD A;  1HAA A;  1NXB A;  3LAQ U;  1BXP A;  1DRS A;  1QM7 A;  1F8U B;  1KTZ B;  4P7U A;  2GOO B;  2UX2 A;  3EVS C;  1F94 A;  1CHV S;  1KS6 A;  1S4Y A;  3PLC A;  1PLO A;  1FFJ A;  1LJZ A;  1UG4 A;  2J8B A;  1CDT A;  1FSS B;  5DZ5 A;  1CCQ A;  1TGX A;  4HQP F;  2HLR A;  3KFD E;  2ABX A;  1FSC A;  1CTX A;  2QC1 A;  4RUD A;  1HAJ A;  3U74 U;  2I9B E;  2H8U A;  1KU6 B;  1TXB A;  2CRS A;  1ONJ A;  2ERA A;  1MR6 A;  1QKE A;  5IMT D;  4QTI U;  1VB0 A;  1HOY A;  4KSN A;  4EY8 B;  1IKC A;  1COE A;  4BDT B;  1FRA A;  1ES7 B;  1KXI A;  2CDX A;  2H62 D;  2H64 C;  1KBS A;  3EBX A;  1V6P A;  4OM5 A;  2MHY A;  1CXN A;  2N99 A;  1W6B A;  1ZAD A;  1KL8 A;  3NEQ A;  2PJY C;  2CTX A;  1NTX A;  1RGJ A;  1L4W A;  3QB4 B;  2L5S A;  4FAO E;  1G6M A;  4OM4 A;  4FAO C;  1IDL A;  1NTN A;  4IYE A;  2L03 A;  1NOR A;  4BIK B;  3NH7 A;  1I02 A;  1ABT A;  1NEA A;  2H62 C;  5IMY C;  2MJY A;  1KBA A;  1CDR A;  1B41 B;  1KFH A;  1LSI A;  2MJ4 A;  2HLQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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