2ML2A

Solution structure of alge6r2 subunit from the azotobacter vinelandii mannuronan c5-epimerase
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
161
structure length
161
Chain Sequence
DPSAEAQPIVGSDLDDQLHGTLLGEEISGGGGADQLYGYGGGDLLDGGAGRDRLTGGEGADTFRFALREDSQRSAAGTFSDLILDFDPTQDKLDVSALGFTGLGNGYAGTLAVSVSDDGTRTYLKSYETDAEGRSFEVSLQGNHAAALSADNILFATPVPV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Poly(beta-D-mannuronate) C5 epimerase 6
publication title Structural and Functional Characterization of the R-modules in Alginate C-5 Epimerases AlgE4 and AlgE6 from Azotobacter vinelandii
pubmed doi rcsb
source organism Azotobacter vinelandii
molecule tags Isomerase
total genus 46
structure length 161
sequence length 161
ec nomenclature ec 5.1.3.37: Mannuronan 5-epimerase.
pdb deposition date 2014-02-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00353 HemolysinCabind RTX calcium-binding nonapeptide repeat (4 copies)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.150.10.10 Mainly Beta 2 Solenoid Alkaline Protease, subunit P, domain 1 Serralysin-like metalloprotease, C-terminal 2ml2A00
1OMJA 5CXLA 2ZJ7A 1K7QA 3WP8A 1K7GA 1K7IA 2YO1A 1AKLA 1SRPA 3A70A 2ZVDA 2ML2A 3HDAP 1OM7A 1O0TA 1KAPP 3HBVP 2XQHA 3HBUP 2QUAA 1JIWP 1AF0A 3A6ZA 1GO7P 3HB2P 3LA9A 1P9HA 1O0QA 2ZJ6A 2YO0A 1SATA 2QUBA 2AGMA 1SMPA 5CVWA 3ULTA 3S6LA 5D7WA 4I35A 1OM6A 1GO8P 2Z8ZA 2Z8XA 1OM8A 3LAAA 1G9KA 1H71P 3NTNA 3U1RA 3VI1A
chains in the Genus database with same CATH superfamily
1OMJA 5CXLA 2ZJ7A 1K7QA 3WP8A 1K7GA 1K7IA 2YO1A 1AKLA 1SRPA 3A70A 2ZVDA 2ML2A 3HDAP 1OM7A 1O0TA 4DT5A 1KAPP 3HBVP 2XQHA 3HBUP 2QUAA 1JIWP 1AF0A 3A6ZA 1GO7P 3HB2P 3LA9A 1P9HA 1O0QA 2ZJ6A 2YO0A 1SATA 2QUBA 2AGMA 1SMPA 5CVWA 3ULTA 3S6LA 5D7WA 4I35A 1OM6A 1GO8P 2Z8ZA 2Z8XA 1OM8A 3LAAA 1G9KA 1H71P 3NTNA 3U1RA 3VI1A
chains in the Genus database with same CATH topology
1OMJA 5CXLA 2ZJ7A 1K7QA 3WP8A 1K7GA 1K7IA 2YO1A 1AKLA 1SRPA 3A70A 2ZVDA 2ML2A 3HDAP 1OM7A 1O0TA 1KAPP 3HBVP 2XQHA 3HBUP 2QUAA 1JIWP 1AF0A 3A6ZA 1GO7P 3HB2P 3LA9A 1P9HA 1O0QA 2ZJ6A 2YO0A 1SATA 2QUBA 2AGMA 1SMPA 5CVWA 3ULTA 3S6LA 5D7WA 4I35A 1OM6A 1GO8P 2Z8ZA 2Z8XA 1OM8A 3LAAA 1G9KA 1H71P 3NTNA 3U1RA 3VI1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OMJ A;  5CXL A;  2ZJ7 A;  1K7Q A;  3WP8 A;  1K7G A;  1K7I A;  2YO1 A;  1AKL A;  1SRP A;  3A70 A;  2ZVD A;  2ML2 A;  3HDA P;  1OM7 A;  1O0T A;  1KAP P;  3HBV P;  2XQH A;  3HBU P;  2QUA A;  1JIW P;  1AF0 A;  3A6Z A;  1GO7 P;  3HB2 P;  3LA9 A;  1P9H A;  1O0Q A;  2ZJ6 A;  2YO0 A;  1SAT A;  2QUB A;  2AGM A;  1SMP A;  5CVW A;  3ULT A;  3S6L A;  5D7W A;  4I35 A;  1OM6 A;  1GO8 P;  2Z8Z A;  2Z8X A;  1OM8 A;  3LAA A;  1G9K A;  1H71 P;  3NTN A;  3U1R A;  3VI1 A; 
#chains in the Genus database with same CATH topology
 1OMJ A;  5CXL A;  2ZJ7 A;  1K7Q A;  3WP8 A;  1K7G A;  1K7I A;  2YO1 A;  1AKL A;  1SRP A;  3A70 A;  2ZVD A;  2ML2 A;  3HDA P;  1OM7 A;  1O0T A;  4DT5 A;  1KAP P;  3HBV P;  2XQH A;  3HBU P;  2QUA A;  1JIW P;  1AF0 A;  3A6Z A;  1GO7 P;  3HB2 P;  3LA9 A;  1P9H A;  1O0Q A;  2ZJ6 A;  2YO0 A;  1SAT A;  2QUB A;  2AGM A;  1SMP A;  5CVW A;  3ULT A;  3S6L A;  5D7W A;  4I35 A;  1OM6 A;  1GO8 P;  2Z8Z A;  2Z8X A;  1OM8 A;  3LAA A;  1G9K A;  1H71 P;  3NTN A;  3U1R A;  3VI1 A; 
#chains in the Genus database with same CATH homology
 1OMJ A;  5CXL A;  2ZJ7 A;  1K7Q A;  3WP8 A;  1K7G A;  1K7I A;  2YO1 A;  1AKL A;  1SRP A;  3A70 A;  2ZVD A;  2ML2 A;  3HDA P;  1OM7 A;  1O0T A;  1KAP P;  3HBV P;  2XQH A;  3HBU P;  2QUA A;  1JIW P;  1AF0 A;  3A6Z A;  1GO7 P;  3HB2 P;  3LA9 A;  1P9H A;  1O0Q A;  2ZJ6 A;  2YO0 A;  1SAT A;  2QUB A;  2AGM A;  1SMP A;  5CVW A;  3ULT A;  3S6L A;  5D7W A;  4I35 A;  1OM6 A;  1GO8 P;  2Z8Z A;  2Z8X A;  1OM8 A;  3LAA A;  1G9K A;  1H71 P;  3NTN A;  3U1R A;  3VI1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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