2MM0A

Solution structures of active ptr toxb and its inactive homolog highlight protein dynamics as a modulator of toxin activity
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
64
structure length
64
Chain Sequence
NCVANILNINEAVIATGCVPAGGELRIFVGSSHSYLIKATSSCGLSLTNQVFINGESVQSGGRC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Host-selective toxin protein
publication title Solution NMR Structures of Pyrenophora tritici-repentis ToxB and Its Inactive Homolog Reveal Potential Determinants of Toxin Activity.
pubmed doi rcsb
source organism Pyrenophora tritici-repentis
total genus 5
structure length 64
sequence length 64
ec nomenclature
pdb deposition date 2014-03-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18224 ToxB_N ToxB N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.330.100 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 2mm0A00
2MM0A 2MM2A
chains in the Genus database with same CATH superfamily
3QQ8A 3CF2A 3ZJUA 1CZ5A 2JV2A 3HU1A 3MB5A 3ZJVA 1I9GA 1CR5A 2KY9A 5C18A 5CD1A 4KLNA 3LHDA 5B6CA 2GFAA 4KDLA 4ARCA 1ZC1A 5CCXA 3QQ7A 2QQRA 3TIWA 5DYGA 3HU3A 2Q19X 3QC8A 4KDIA 1CZ4A 3FPTA 2Q1CX 2Q1AX 5FTLA 3BQBA 5D6XA 1QCSA 4KODA 3ZGZA 5EPPA 1R7RA 4ARIA 5DYIA 5GLFA 5ERGB 5FTKA 4AQ7A 4AS1A 3LGAA 1QDNA 2YUJA 5C1BA 4CQNA 5CCBA 3QWZA 4UC4A 3FPRA 5FTMA 4FIBA 3HU2A 5FTJA 2MM0A 4KO8A 5D6YA 2Q18X 3ZJTA 2LW6A 2YVLA 5D6WA 2QQSA 5EQJB 2GF7A 3FPUA 4RV0A 2MM2A 1O54A 2XDPA 2PWYA 2Q1DX 1S3SA 1E32A 1WLFA 2PJHB 2B25A 5FTNA
chains in the Genus database with same CATH topology
3QQ8A 3CF2A 3ZJUA 1CZ5A 2JV2A 3HU1A 3MB5A 3ZJVA 1I9GA 1CR5A 2KY9A 5C18A 5CD1A 4KLNA 3LHDA 5B6CA 2GFAA 4KDLA 4ARCA 1ZC1A 5CCXA 3QQ7A 2QQRA 3TIWA 5DYGA 3HU3A 2Q19X 3QC8A 4KDIA 1CZ4A 3FPTA 2Q1CX 2Q1AX 5FTLA 3BQBA 5D6XA 1QCSA 4KODA 3ZGZA 5EPPA 1R7RA 4ARIA 5DYIA 5GLFA 5ERGB 5FTKA 4AQ7A 4AS1A 3LGAA 1QDNA 2YUJA 5C1BA 4CQNA 5CCBA 3QWZA 4UC4A 3FPRA 5FTMA 4FIBA 3HU2A 5FTJA 2MM0A 4KO8A 5D6YA 2Q18X 3ZJTA 2LW6A 2YVLA 5D6WA 2QQSA 5EQJB 2GF7A 3FPUA 4RV0A 2MM2A 1O54A 2XDPA 2PWYA 2Q1DX 1S3SA 1E32A 1WLFA 2PJHB 2B25A 5FTNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MM0 A;  2MM2 A; 
#chains in the Genus database with same CATH topology
 3QQ8 A;  3CF2 A;  3ZJU A;  1CZ5 A;  2JV2 A;  3HU1 A;  3MB5 A;  3ZJV A;  1I9G A;  1CR5 A;  2KY9 A;  5C18 A;  5CD1 A;  4KLN A;  3LHD A;  5B6C A;  2GFA A;  4KDL A;  4ARC A;  1ZC1 A;  5CCX A;  3QQ7 A;  2QQR A;  3TIW A;  5DYG A;  3HU3 A;  2Q19 X;  3QC8 A;  4KDI A;  1CZ4 A;  3FPT A;  2Q1C X;  2Q1A X;  5FTL A;  3BQB A;  5D6X A;  1QCS A;  4KOD A;  3ZGZ A;  5EPP A;  1R7R A;  4ARI A;  5DYI A;  5GLF A;  5ERG B;  5FTK A;  4AQ7 A;  4AS1 A;  3LGA A;  1QDN A;  2YUJ A;  5C1B A;  4CQN A;  5CCB A;  3QWZ A;  4UC4 A;  3FPR A;  5FTM A;  4FIB A;  3HU2 A;  5FTJ A;  2MM0 A;  4KO8 A;  5D6Y A;  2Q18 X;  3ZJT A;  2LW6 A;  2YVL A;  5D6W A;  2QQS A;  5EQJ B;  2GF7 A;  3FPU A;  4RV0 A;  2MM2 A;  1O54 A;  2XDP A;  2PWY A;  2Q1D X;  1S3S A;  1E32 A;  1WLF A;  2PJH B;  2B25 A;  5FTN A; 
#chains in the Genus database with same CATH homology
 3QQ8 A;  3CF2 A;  3ZJU A;  1CZ5 A;  2JV2 A;  3HU1 A;  3MB5 A;  3ZJV A;  1I9G A;  1CR5 A;  2KY9 A;  5C18 A;  5CD1 A;  4KLN A;  3LHD A;  5B6C A;  2GFA A;  4KDL A;  4ARC A;  1ZC1 A;  5CCX A;  3QQ7 A;  2QQR A;  3TIW A;  5DYG A;  3HU3 A;  2Q19 X;  3QC8 A;  4KDI A;  1CZ4 A;  3FPT A;  2Q1C X;  2Q1A X;  5FTL A;  3BQB A;  5D6X A;  1QCS A;  4KOD A;  3ZGZ A;  5EPP A;  1R7R A;  4ARI A;  5DYI A;  5GLF A;  5ERG B;  5FTK A;  4AQ7 A;  4AS1 A;  3LGA A;  1QDN A;  2YUJ A;  5C1B A;  4CQN A;  5CCB A;  3QWZ A;  4UC4 A;  3FPR A;  5FTM A;  4FIB A;  3HU2 A;  5FTJ A;  2MM0 A;  4KO8 A;  5D6Y A;  2Q18 X;  3ZJT A;  2LW6 A;  2YVL A;  5D6W A;  2QQS A;  5EQJ B;  2GF7 A;  3FPU A;  4RV0 A;  2MM2 A;  1O54 A;  2XDP A;  2PWY A;  2Q1D X;  1S3S A;  1E32 A;  1WLF A;  2PJH B;  2B25 A;  5FTN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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