2MOP1

Structure of bitistatin a
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
83
structure length
83
Chain Sequence
SPPVCGNKILEQGEDCDCGSPANCQDRCCNAATCKLTPGSQCNYGECCDQCRFKKAGTVCRIARGDWNDDYCTGKSSDCPWNH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Disintegrin bitistatin
publication title NMR structure of bitistatin - a missing piece in the evolutionary pathway of snake venom disintegrins.
pubmed doi rcsb
total genus 12
structure length 83
sequence length 83
ec nomenclature
pdb deposition date 2014-04-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
1 PF00200 Disintegrin Disintegrin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.70.10 Few Secondary Structures Irregular Echistatin Disintegrin domain 2mop100
3C05A 1TEJA 1Z1XA 4RQGA 2PJFA 1RMRA 4M4CA 4R5UA 1RO3A 1MPZA 1Q7IA 2PJGA 2W9WA 1TEJB 3C05B 3UCIA 3G5CA 2M7HA 2PJIA 1L3XA 1Q7JA 2W9UA 1J2LA 2W9VA 1N4YA 2M7FA 2LJVA 2MP51 2W9OA 2MOP1 2ECHA 2M75A 1FVLA 4R5RA
chains in the Genus database with same CATH superfamily
3C05A 1TEJA 1Z1XA 4RQGA 2PJFA 1RMRA 4M4CA 4R5UA 1RO3A 1MPZA 1Q7IA 2PJGA 2W9WA 1TEJB 3C05B 3UCIA 3G5CA 2M7HA 2PJIA 1L3XA 1Q7JA 2W9UA 1J2LA 2W9VA 1N4YA 2M7FA 2LJVA 2MP51 2W9OA 2MOP1 2ECHA 2M75A 1FVLA 4R5RA
chains in the Genus database with same CATH topology
3C05A 1TEJA 1Z1XA 4RQGA 2PJFA 1RMRA 4M4CA 4R5UA 1RO3A 1MPZA 1Q7IA 2PJGA 2W9WA 1TEJB 3C05B 3UCIA 3G5CA 2M7HA 2PJIA 1L3XA 1Q7JA 2W9UA 1J2LA 2W9VA 1N4YA 2M7FA 2LJVA 2MP51 2W9OA 2MOP1 2ECHA 2M75A 1FVLA 4R5RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C05 A;  1TEJ A;  1Z1X A;  4RQG A;  2PJF A;  1RMR A;  4M4C A;  4R5U A;  1RO3 A;  1MPZ A;  1Q7I A;  2PJG A;  2W9W A;  1TEJ B;  3C05 B;  3UCI A;  3G5C A;  2M7H A;  2PJI A;  1L3X A;  1Q7J A;  2W9U A;  1J2L A;  2W9V A;  1N4Y A;  2M7F A;  2LJV A;  2MP5 1;  2W9O A;  2MOP 1;  2ECH A;  2M75 A;  1FVL A;  4R5R A; 
#chains in the Genus database with same CATH topology
 3C05 A;  1TEJ A;  1Z1X A;  4RQG A;  2PJF A;  1RMR A;  4M4C A;  4R5U A;  1RO3 A;  1MPZ A;  1Q7I A;  2PJG A;  2W9W A;  1TEJ B;  3C05 B;  3UCI A;  3G5C A;  2M7H A;  2PJI A;  1L3X A;  1Q7J A;  2W9U A;  1J2L A;  2W9V A;  1N4Y A;  2M7F A;  2LJV A;  2MP5 1;  2W9O A;  2MOP 1;  2ECH A;  2M75 A;  1FVL A;  4R5R A; 
#chains in the Genus database with same CATH homology
 3C05 A;  1TEJ A;  1Z1X A;  4RQG A;  2PJF A;  1RMR A;  4M4C A;  4R5U A;  1RO3 A;  1MPZ A;  1Q7I A;  2PJG A;  2W9W A;  1TEJ B;  3C05 B;  3UCI A;  3G5C A;  2M7H A;  2PJI A;  1L3X A;  1Q7J A;  2W9U A;  1J2L A;  2W9V A;  1N4Y A;  2M7F A;  2LJV A;  2MP5 1;  2W9O A;  2MOP 1;  2ECH A;  2M75 A;  1FVL A;  4R5R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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