2MOTA

Backbone structure of actin depolymerizing factor (adf) of toxoplasma gondii based on prot3dnmr approach
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
118
structure length
118
Chain Sequence
MASGMGVDENCVARFNELKIRKTVKWIVFKIENTKIVVEKDGKGNADEFRGALPANDCRFGVYDCGNKIQFVLWCPDNAPVKPRMTYASSKDALLKKLDGATAVALEAHEMGDLAPLA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Actin depolymerizing factor ADF
publication title Prot3DNMR: A Simple and Swift Strategy for Backbone Structure Determination of Proteins by NMR
rcsb
source organism Toxoplasma gondii
total genus 15
structure length 118
sequence length 118
ec nomenclature
pdb deposition date 2014-05-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 2motA00
2VACA 1SVYA 4KEEA 4PKIG 3EFOA 1WFSA 1AK6A 1NLVG 2LLFA 1P8ZG 1D4XG 3EG9A 3EH1A 2W0IA 5KYYB 2FGHA 2NUPB 3L50A 1C0FS 2VILA 1PCXA 1Q8GA 1KCQA 4KEDA 1NM1G 4CBWG 1T3YA 1TVJA 2LJ8A 1RGIG 2FF6G 1M4JA 1C0GS 1AK7A 5KYUB 4BEX1 3DAWB 5KYXB 2I2QA 1QPVA 3FFKA 2VIKA 4Z94G 1NPHA 1M2OA 1SVRA 1Q8XA 2MP4A 1JHWA 2NUTA 4CBUG 3EH2A 4CBXG 2KVKA 3A5LS 2MV2A 4JD2H 2LXXA 1J72A 1M2VA 1COFA 5KYWB 5L6WC 3CI5G 2XFAA 1HQZ1 1YVNG 1DEJS 2MOTA 1PD1A 3EFOB 3EGDA 3EGXA 1NMDG 1WM4A 2FH1A 2FH4A 2D8BA 1WNJA 1CNUA 3EG9B 5HVKD 1PD0A 1T2LA 4PKGG 3FFNA 1SVQA 1V6FA 2FH2A 4S10C 1M2VB 2NUPA 3CJBG 1D0NA 1MDUA 5FAEA 1TMWA 1F7SA 1H1VG 1AHQA 3EGDB 5DD2A 1VFQA 3EGXB 5KYUA 3FG6A 5KYXA 1X67A 1ESVS 4LIZA 1YAGG 1T3XA 1EQYS 2HD7A 1T44G 4KEFA 5KYNA 2QTVA 2NUTB 2XF1A 1UDMA 3A5NS 3Q2BA 2FH3A 5KYYA 1P8XA 5HVKB 3TU5B 3CIPG 5A1MA 2L72A 2FF3A 5FAFA 1VKKA 3A5MS 5KYWA 3FG7A 1CFYA 5IVUA 4PKHB 3A5OS 3CJCG
chains in the Genus database with same CATH superfamily
2VACA 1SVYA 4KEEA 4PKIG 3EFOA 3DA7A 1WFSA 1AK6A 1NLVG 2LLFA 1P8ZG 1D4XG 3EG9A 3EH1A 2W0IA 5KYYB 2FGHA 2NUPB 3L50A 1C0FS 2VILA 1PCXA 1Q8GA 1KCQA 4KEDA 1NM1G 4CBWG 1T3YA 1TVJA 2LJ8A 1RGIG 2FF6G 1M4JA 1C0GS 1AK7A 5KYUB 4BEX1 3DAWB 5KYXB 2I2QA 1QPVA 3FFKA 2VIKA 4Z94G 1NPHA 1M2OA 1SVRA 1Q8XA 2MP4A 1JHWA 2NUTA 4CBUG 3EH2A 4CBXG 2KVKA 3A5LS 2MV2A 4JD2H 2LXXA 1J72A 1M2VA 1COFA 5KYWB 5L6WC 3CI5G 2XFAA 1HQZ1 1YVNG 1DEJS 2MOTA 1PD1A 3EFOB 3EGDA 3EGXA 1NMDG 1WM4A 2FH1A 2FH4A 2D8BA 1WNJA 1CNUA 3EG9B 5HVKD 1PD0A 1T2LA 4PKGG 3FFNA 1SVQA 1V6FA 2FH2A 4S10C 1M2VB 2NUPA 3CJBG 1D0NA 1MDUA 5FAEA 1TMWA 1F7SA 1H1VG 1AHQA 3EGDB 5DD2A 1VFQA 3EGXB 5KYUA 3FG6A 5KYXA 1X67A 1ESVS 4LIZA 1YAGG 1T3XA 1EQYS 2HD7A 1T44G 4KEFA 5KYNA 2QTVA 2NUTB 2XF1A 1UDMA 3A5NS 3Q2BA 2FH3A 5KYYA 1P8XA 5HVKB 3TU5B 3CIPG 5A1MA 2L72A 2FF3A 5FAFA 1VKKA 3A5MS 5KYWA 3FG7A 1CFYA 5IVUA 4PKHB 3A5OS 3CJCG
chains in the Genus database with same CATH topology
2VACA 1SVYA 4KEEA 4PKIG 3EFOA 3DA7A 1WFSA 1AK6A 1NLVG 2LLFA 1P8ZG 1D4XG 3EG9A 3EH1A 2W0IA 5KYYB 2FGHA 2NUPB 3L50A 1C0FS 2VILA 1PCXA 1Q8GA 1KCQA 4KEDA 1NM1G 4CBWG 1T3YA 1TVJA 2LJ8A 1RGIG 2FF6G 1M4JA 1C0GS 1AK7A 5KYUB 4BEX1 3DAWB 5KYXB 2I2QA 1QPVA 3FFKA 2VIKA 4Z94G 1NPHA 1M2OA 1SVRA 1Q8XA 2MP4A 1JHWA 2NUTA 4CBUG 3EH2A 4CBXG 2KVKA 3A5LS 2MV2A 4JD2H 2LXXA 1J72A 1M2VA 1COFA 5KYWB 5L6WC 3CI5G 2XFAA 1HQZ1 1YVNG 1DEJS 2MOTA 1PD1A 3EFOB 3EGDA 3EGXA 1NMDG 1WM4A 2FH1A 2FH4A 2D8BA 1WNJA 1CNUA 3EG9B 5HVKD 1PD0A 1T2LA 4PKGG 3FFNA 1SVQA 1V6FA 2FH2A 4S10C 1M2VB 2NUPA 3CJBG 1D0NA 1MDUA 5FAEA 1TMWA 1F7SA 1H1VG 1AHQA 3EGDB 5DD2A 1VFQA 3EGXB 5KYUA 3FG6A 5KYXA 1X67A 1ESVS 4LIZA 1YAGG 1T3XA 1EQYS 2HD7A 1T44G 4KEFA 5KYNA 2QTVA 2NUTB 2XF1A 1UDMA 3A5NS 3Q2BA 2FH3A 5KYYA 1P8XA 5HVKB 3TU5B 3CIPG 5A1MA 2L72A 2FF3A 5FAFA 1VKKA 3A5MS 5KYWA 3FG7A 1CFYA 5IVUA 4PKHB 3A5OS 3CJCG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VAC A;  1SVY A;  4KEE A;  4PKI G;  3EFO A;  1WFS A;  1AK6 A;  1NLV G;  2LLF A;  1P8Z G;  1D4X G;  3EG9 A;  3EH1 A;  2W0I A;  5KYY B;  2FGH A;  2NUP B;  3L50 A;  1C0F S;  2VIL A;  1PCX A;  1Q8G A;  1KCQ A;  4KED A;  1NM1 G;  4CBW G;  1T3Y A;  1TVJ A;  2LJ8 A;  1RGI G;  2FF6 G;  1M4J A;  1C0G S;  1AK7 A;  5KYU B;  4BEX 1;  3DAW B;  5KYX B;  2I2Q A;  1QPV A;  3FFK A;  2VIK A;  4Z94 G;  1NPH A;  1M2O A;  1SVR A;  1Q8X A;  2MP4 A;  1JHW A;  2NUT A;  4CBU G;  3EH2 A;  4CBX G;  2KVK A;  3A5L S;  2MV2 A;  4JD2 H;  2LXX A;  1J72 A;  1M2V A;  1COF A;  5KYW B;  5L6W C;  3CI5 G;  2XFA A;  1HQZ 1;  1YVN G;  1DEJ S;  2MOT A;  1PD1 A;  3EFO B;  3EGD A;  3EGX A;  1NMD G;  1WM4 A;  2FH1 A;  2FH4 A;  2D8B A;  1WNJ A;  1CNU A;  3EG9 B;  5HVK D;  1PD0 A;  1T2L A;  4PKG G;  3FFN A;  1SVQ A;  1V6F A;  2FH2 A;  4S10 C;  1M2V B;  2NUP A;  3CJB G;  1D0N A;  1MDU A;  5FAE A;  1TMW A;  1F7S A;  1H1V G;  1AHQ A;  3EGD B;  5DD2 A;  1VFQ A;  3EGX B;  5KYU A;  3FG6 A;  5KYX A;  1X67 A;  1ESV S;  4LIZ A;  1YAG G;  1T3X A;  1EQY S;  2HD7 A;  1T44 G;  4KEF A;  5KYN A;  2QTV A;  2NUT B;  2XF1 A;  1UDM A;  3A5N S;  3Q2B A;  2FH3 A;  5KYY A;  1P8X A;  5HVK B;  3TU5 B;  3CIP G;  5A1M A;  2L72 A;  2FF3 A;  5FAF A;  1VKK A;  3A5M S;  5KYW A;  3FG7 A;  1CFY A;  5IVU A;  4PKH B;  3A5O S;  3CJC G; 
#chains in the Genus database with same CATH topology
 2VAC A;  1SVY A;  4KEE A;  4PKI G;  3EFO A;  3DA7 A;  1WFS A;  1AK6 A;  1NLV G;  2LLF A;  1P8Z G;  1D4X G;  3EG9 A;  3EH1 A;  2W0I A;  5KYY B;  2FGH A;  2NUP B;  3L50 A;  1C0F S;  2VIL A;  1PCX A;  1Q8G A;  1KCQ A;  4KED A;  1NM1 G;  4CBW G;  1T3Y A;  1TVJ A;  2LJ8 A;  1RGI G;  2FF6 G;  1M4J A;  1C0G S;  1AK7 A;  5KYU B;  4BEX 1;  3DAW B;  5KYX B;  2I2Q A;  1QPV A;  3FFK A;  2VIK A;  4Z94 G;  1NPH A;  1M2O A;  1SVR A;  1Q8X A;  2MP4 A;  1JHW A;  2NUT A;  4CBU G;  3EH2 A;  4CBX G;  2KVK A;  3A5L S;  2MV2 A;  4JD2 H;  2LXX A;  1J72 A;  1M2V A;  1COF A;  5KYW B;  5L6W C;  3CI5 G;  2XFA A;  1HQZ 1;  1YVN G;  1DEJ S;  2MOT A;  1PD1 A;  3EFO B;  3EGD A;  3EGX A;  1NMD G;  1WM4 A;  2FH1 A;  2FH4 A;  2D8B A;  1WNJ A;  1CNU A;  3EG9 B;  5HVK D;  1PD0 A;  1T2L A;  4PKG G;  3FFN A;  1SVQ A;  1V6F A;  2FH2 A;  4S10 C;  1M2V B;  2NUP A;  3CJB G;  1D0N A;  1MDU A;  5FAE A;  1TMW A;  1F7S A;  1H1V G;  1AHQ A;  3EGD B;  5DD2 A;  1VFQ A;  3EGX B;  5KYU A;  3FG6 A;  5KYX A;  1X67 A;  1ESV S;  4LIZ A;  1YAG G;  1T3X A;  1EQY S;  2HD7 A;  1T44 G;  4KEF A;  5KYN A;  2QTV A;  2NUT B;  2XF1 A;  1UDM A;  3A5N S;  3Q2B A;  2FH3 A;  5KYY A;  1P8X A;  5HVK B;  3TU5 B;  3CIP G;  5A1M A;  2L72 A;  2FF3 A;  5FAF A;  1VKK A;  3A5M S;  5KYW A;  3FG7 A;  1CFY A;  5IVU A;  4PKH B;  3A5O S;  3CJC G; 
#chains in the Genus database with same CATH homology
 2VAC A;  1SVY A;  4KEE A;  4PKI G;  3EFO A;  3DA7 A;  1WFS A;  1AK6 A;  1NLV G;  2LLF A;  1P8Z G;  1D4X G;  3EG9 A;  3EH1 A;  2W0I A;  5KYY B;  2FGH A;  2NUP B;  3L50 A;  1C0F S;  2VIL A;  1PCX A;  1Q8G A;  1KCQ A;  4KED A;  1NM1 G;  4CBW G;  1T3Y A;  1TVJ A;  2LJ8 A;  1RGI G;  2FF6 G;  1M4J A;  1C0G S;  1AK7 A;  5KYU B;  4BEX 1;  3DAW B;  5KYX B;  2I2Q A;  1QPV A;  3FFK A;  2VIK A;  4Z94 G;  1NPH A;  1M2O A;  1SVR A;  1Q8X A;  2MP4 A;  1JHW A;  2NUT A;  4CBU G;  3EH2 A;  4CBX G;  2KVK A;  3A5L S;  2MV2 A;  4JD2 H;  2LXX A;  1J72 A;  1M2V A;  1COF A;  5KYW B;  5L6W C;  3CI5 G;  2XFA A;  1HQZ 1;  1YVN G;  1DEJ S;  2MOT A;  1PD1 A;  3EFO B;  3EGD A;  3EGX A;  1NMD G;  1WM4 A;  2FH1 A;  2FH4 A;  2D8B A;  1WNJ A;  1CNU A;  3EG9 B;  5HVK D;  1PD0 A;  1T2L A;  4PKG G;  3FFN A;  1SVQ A;  1V6F A;  2FH2 A;  4S10 C;  1M2V B;  2NUP A;  3CJB G;  1D0N A;  1MDU A;  5FAE A;  1TMW A;  1F7S A;  1H1V G;  1AHQ A;  3EGD B;  5DD2 A;  1VFQ A;  3EGX B;  5KYU A;  3FG6 A;  5KYX A;  1X67 A;  1ESV S;  4LIZ A;  1YAG G;  1T3X A;  1EQY S;  2HD7 A;  1T44 G;  4KEF A;  5KYN A;  2QTV A;  2NUT B;  2XF1 A;  1UDM A;  3A5N S;  3Q2B A;  2FH3 A;  5KYY A;  1P8X A;  5HVK B;  3TU5 B;  3CIP G;  5A1M A;  2L72 A;  2FF3 A;  5FAF A;  1VKK A;  3A5M S;  5KYW A;  3FG7 A;  1CFY A;  5IVU A;  4PKH B;  3A5O S;  3CJC G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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