2MSJA

Type iii antifreeze protein isoform hplc 12 n46s
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
66
structure length
66
Chain Sequence
ANQASVVANQLIPINTALTLVMMRSEVVTPVGIPAEDIPRLVSMQVSRAVPLGTTLMPDMVKGYAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antifreeze protein
molecule keywords PROTEIN (ANTIFREEZE PROTEIN TYPE III)
publication title Quantitative and qualitative analysis of type III antifreeze protein structure and function.
pubmed doi rcsb
source organism Macrozoarces americanus
total genus 14
structure length 66
sequence length 66
ec nomenclature
pdb deposition date 1999-01-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1210.10 Alpha Beta Alpha-Beta Complex Type Iii Antifreeze Protein Isoform Hplc 12 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 2msjA00
5MSIA 9AMEA 7MSIA 9MSIA 2LX3A 7AMEA 4IPJA 2MSJA 8AMEA 3RDNA 6MSIA 2ZDRA 6AMEA 1GZIA 1JABA 1UCSA 2WQPA 2LX2A 1MSIA 1KDEA 2MSIA 3AMEA 3NLAA 2AMEA 4MSIA 4IPIA 1C89A 1XUZA 4AMEA 4UR6A 1WVOA 2JIAA 1KDFA 2SPGA 1EKLA 8MSIA 4NY6A 1C8AA 1B7JA 3FRNA 4UR4A 1XUUA 3QF6A 1OPSA 1VLIA 3G8RA 3MSIA 3CM4A 1HG7A 1MSJA 1B7KA 1AMEA 1B7IA
chains in the Genus database with same CATH superfamily
5MSIA 9AMEA 7MSIA 9MSIA 2LX3A 7AMEA 4IPJA 2MSJA 8AMEA 3RDNA 6MSIA 2ZDRA 6AMEA 1GZIA 1JABA 1UCSA 2WQPA 2LX2A 1MSIA 1KDEA 2MSIA 3AMEA 3NLAA 3K3SA 2AMEA 4MSIA 4IPIA 1C89A 1XUZA 4AMEA 4UR6A 1WVOA 2JIAA 3LAZA 1KDFA 2SPGA 1EKLA 8MSIA 4NY6A 1C8AA 1B7JA 3FRNA 4UR4A 1XUUA 3QF6A 1OPSA 1VLIA 3G8RA 3MSIA 3CM4A 1HG7A 1MSJA 1B7KA 1AMEA 1B7IA
chains in the Genus database with same CATH topology
5MSIA 9AMEA 7MSIA 9MSIA 2LX3A 7AMEA 4IPJA 2MSJA 8AMEA 3RDNA 6MSIA 2ZDRA 6AMEA 1GZIA 1JABA 1UCSA 2WQPA 2LX2A 1MSIA 1KDEA 2MSIA 3AMEA 3NLAA 2AMEA 4MSIA 4IPIA 1C89A 1XUZA 4AMEA 4UR6A 1WVOA 2JIAA 1KDFA 2SPGA 1EKLA 8MSIA 4NY6A 1C8AA 1B7JA 3FRNA 4UR4A 1XUUA 3QF6A 1OPSA 1VLIA 3G8RA 3MSIA 3CM4A 1HG7A 1MSJA 1B7KA 1AMEA 1B7IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5MSI A;  9AME A;  7MSI A;  9MSI A;  2LX3 A;  7AME A;  4IPJ A;  2MSJ A;  8AME A;  3RDN A;  6MSI A;  2ZDR A;  6AME A;  1GZI A;  1JAB A;  1UCS A;  2WQP A;  2LX2 A;  1MSI A;  1KDE A;  2MSI A;  3AME A;  3NLA A;  2AME A;  4MSI A;  4IPI A;  1C89 A;  1XUZ A;  4AME A;  4UR6 A;  1WVO A;  2JIA A;  1KDF A;  2SPG A;  1EKL A;  8MSI A;  4NY6 A;  1C8A A;  1B7J A;  3FRN A;  4UR4 A;  1XUU A;  3QF6 A;  1OPS A;  1VLI A;  3G8R A;  3MSI A;  3CM4 A;  1HG7 A;  1MSJ A;  1B7K A;  1AME A;  1B7I A; 
#chains in the Genus database with same CATH topology
 5MSI A;  9AME A;  7MSI A;  9MSI A;  2LX3 A;  7AME A;  4IPJ A;  2MSJ A;  8AME A;  3RDN A;  6MSI A;  2ZDR A;  6AME A;  1GZI A;  1JAB A;  1UCS A;  2WQP A;  2LX2 A;  1MSI A;  1KDE A;  2MSI A;  3AME A;  3NLA A;  3K3S A;  2AME A;  4MSI A;  4IPI A;  1C89 A;  1XUZ A;  4AME A;  4UR6 A;  1WVO A;  2JIA A;  3LAZ A;  1KDF A;  2SPG A;  1EKL A;  8MSI A;  4NY6 A;  1C8A A;  1B7J A;  3FRN A;  4UR4 A;  1XUU A;  3QF6 A;  1OPS A;  1VLI A;  3G8R A;  3MSI A;  3CM4 A;  1HG7 A;  1MSJ A;  1B7K A;  1AME A;  1B7I A; 
#chains in the Genus database with same CATH homology
 5MSI A;  9AME A;  7MSI A;  9MSI A;  2LX3 A;  7AME A;  4IPJ A;  2MSJ A;  8AME A;  3RDN A;  6MSI A;  2ZDR A;  6AME A;  1GZI A;  1JAB A;  1UCS A;  2WQP A;  2LX2 A;  1MSI A;  1KDE A;  2MSI A;  3AME A;  3NLA A;  2AME A;  4MSI A;  4IPI A;  1C89 A;  1XUZ A;  4AME A;  4UR6 A;  1WVO A;  2JIA A;  1KDF A;  2SPG A;  1EKL A;  8MSI A;  4NY6 A;  1C8A A;  1B7J A;  3FRN A;  4UR4 A;  1XUU A;  3QF6 A;  1OPS A;  1VLI A;  3G8R A;  3MSI A;  3CM4 A;  1HG7 A;  1MSJ A;  1B7K A;  1AME A;  1B7I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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