2MXDA

Solution structure of vpg of porcine sapovirus
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
62
structure length
62
Chain Sequence
GAMAIALRDDEYDEWQDIIRDWRKEMTVQQFLDLKERALSGASDPDSQRYNAWLELRAKRLS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
molecule keywords Viral protein genome-linked
publication title Solution structure of the porcine sapovirus VPg core reveals a stable three-helical bundle with a conserved surface patch.
pubmed doi rcsb
source organism Porcine enteric sapovirus
total genus 18
structure length 62
sequence length 62
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 2014-12-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.110 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) 434 Repressor (Amino-terminal Domain) 2mxdA00
2M4HA 2MXDA
chains in the Genus database with same CATH superfamily
2H8RA 1ZUGA 4YG1A 3GUUA 3TRBA 3U3WA 3SR4A 2XI8A 4OBMA 5DTQA 1WH6A 2PUAA 1ZZBA 1ZZCA 2GRLA 1R63A 2AXZA 1PERL 3R09A 2J7UA 3CROL 3EUSA 2PXBA 3PXPA 1BDHA 4ER7A 2AXUA 4Z5DA 1MFQC 4I8TA 2LYKA 3KXAA 3QOXA 1UXDA 4HRAA 4Y42A 4PU8A 5DSXA 2BNOA 3TELA 1SQ8A 3OMTA 1QP0A 2PXLA 2BNNA 4WVLA 4MCXA 1RZRD 4ER5A 1NEQA 2LYQA 2XSDC 1WH8A 1Y9QA 4PU4C 2PIJA 1S7EA 2LLVA 4GHJA 4O8BA 4FBIA 3JXCL 2PUBA 3CECA 2OFYA 3DM5A 3D1NI 4YG7B 2LYJA 1ZS4A 4Z58A 2IV1A 3TFLA 2XCJA 2PXKA 2ICTA 3G0TA 3OQOA 2KZ8A 3LISA 3H5TA 2PPXA 1QQAA 4IA8A 1LLIA 2LYRA 1B0NA 4J1XA 2PUFA 3SCHA 3NZLA 3VWSA 5K98B 2PXPA 1RZSA 3O9XA 3B7HA 4YG4A 1QB2A 1JWLA 1NW3A 3CLCA 2MQKA 4Z59A 4JCYA 3LQXA 1HF0A 1ZZ9A 3VK0A 1LMB3 2HINA 2XXQA 3FYMA 4I6TA 2LCVA 4JQDA 3OP9A 3ME5A 2LYPA 2LYSA 3SCFA 2CSFA 4X4DA 2J7WA 1LCCA 4DE9A 4Z5CA 3RZZA 1OSLA 2KEJA 3JXBC 1GT0C 4NDWA 5DTRA 4DE8A 2PUCA 3KL4A 1R69A 2BNMA 2EF8A 1CJGA 1IC8A 2PE5A 3SCGA 1PNRA 3FMYA 2O38A 2AWIA 3G7DA 4IWRA 3ZKCA 3LFPA 1CQTA 2O4AA 1QPZA 5DT2A 3DNVB 2GRMA 1QZXA 4ER6A 1QQBA 1E3OC 1ZPQA 3QYXA 2V3CC 2WIUB 2XIUA 3QFIA 4EQZA 3BS3A 3A9ZA 2MXDA 2L8NA 1NERA 4PU3C 1DWKA 2IVQA 2HSGA 2PXFA 4I6RA 3S8QA 2L49A 1JH9A 1DW9A 2LNMA 2M4HA 3NROA 1U2ZA 1YSEA 4Z5HA 5DRYA 4YARA 2R63A 2JQEA 2OR1L 3KJXA 3QF3A 1UTXA 3BD1A 5JUWA 4Q2JA 3F51A 3QOWA 2IU7A 3GZDA 1ZAYA 1POUA 2YBDA 3OWQA 1LCDA 2O49A 5GAHi 3FYAA 3BDNA 2PXUA 2EBYA 3R1FA 1ZVVA 1X2LA 3A9XA 2FFHA 2CROA 2R1JL 2PXQA 1WETA 2LYLA 2KEIA 3GBFA 1LQCA 2AUWA 4PU7A 3IVPA 4IVZA 3GZDC 4JCXA 4I6UA 3UWPA 1ADRA 3MEJA 3UFDA 3A9YA 3GN5B 1RIOA 4X4FA 2JCGA 2ODRD 4EKGA 4J1WA 1RPEL 2MEZA 2LLWA 4ER0A 4F8DA 2IVBA 3NDBB 1L1MA 3F52A 2HCNA 2FJRA 1VPWA 3GZCA 3OKZA 1JFSA 2PUEA 5GAGi 1AU7A 4X4HA 2PXTA 1O4XA 1Y7YA 3JXDL 5DRTA 3OQNA 2BJCA 4MCTA 2IVGA 4X4IA 2D5VA 1OCTC 1UXCA 4X4GA 5A7LA 2HCSA 2GZUA 2VEOA 2XXPA 4FN3A 1ZZ6A 3ZHIA 1ZZ8A 3HZIB 1QP7A 2B5AA 2XJ3A 5DTMA 2HFZA 1RZRA 2PXDA 3TEPA 3MLFA 1QP4A 2IUOA 1X57A 2AW6A 3L1PA 1JFTA 3G5GA 4X4CA 2WUSR 3KZ3A 2PUGA 1HQ1A 1WIZA 3QQ6A 4ER3A 3SX0A 4X4BA 4OB4A 2PXEA 3F6WA 2L1PA 1BDIA 1EFAA 4X4EA 1PRAA 2JVLA 2PXVA 1PRUA 4GQMA 4EZIA 3ZPXA 3PE5A 1XWRA 2PUDA 3QWGA 1DULA 4YBAA 3NXHA 2KEKA 4EKIA 2KPJA 1PRVA 3OQMA 4EK9A 2A6CA 3M9LA 2ICPA 2XXAA 2EWTA 2AXVA 3ZHMA 3GN5A 1ZZ7A
chains in the Genus database with same CATH topology
4EQZA 5DRYA 3ZPXA 2LLWA 3PE5A 4DE9A 3TFLA 1NW3A 3GUUA 4ER0A 2YBDA 3OWQA 3G0TA 4WVLA 5DRTA 3SR4A 3UWPA 2HCNA 3A9ZA 2MXDA 4ER7A 4ER5A 3NXHA 4ER3A 3MEJA 3A9XA 5DTMA 5DT2A 2HFZA 4EKIA 3GZCA 4OBMA 3SX0A 5JUWA 5DTQA 2XXQA 4Q2JA 4ER6A 2L1PA 3A9YA 5DTRA 4EK9A 2LLVA 3QOXA 3QOWA 4DE8A 3M9LA 3OKZA 2HCSA 4HRAA 3ME5A 2ODRD 2LNMA 2M4HA 3GZDA 4EKGA 3TEPA 3NROA 5DSXA 2VEOA 1U2ZA 2XXPA 3NZLA 3VWSA 4EZIA 3R09A 2J7WA 3QFIA 3TELA 3GZDC 2J7UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2M4H A;  2MXD A; 
#chains in the Genus database with same CATH topology
 2H8R A;  1ZUG A;  4YG1 A;  3GUU A;  3TRB A;  3U3W A;  3SR4 A;  2XI8 A;  4OBM A;  5DTQ A;  1WH6 A;  2PUA A;  1ZZB A;  1ZZC A;  2GRL A;  1R63 A;  2AXZ A;  1PER L;  3R09 A;  2J7U A;  3CRO L;  3EUS A;  2PXB A;  3PXP A;  1BDH A;  4ER7 A;  2AXU A;  4Z5D A;  1MFQ C;  4I8T A;  2LYK A;  3KXA A;  3QOX A;  1UXD A;  4HRA A;  4Y42 A;  4PU8 A;  5DSX A;  2BNO A;  3TEL A;  1SQ8 A;  3OMT A;  1QP0 A;  2PXL A;  2BNN A;  4WVL A;  4MCX A;  1RZR D;  4ER5 A;  1NEQ A;  2LYQ A;  2XSD C;  1WH8 A;  1Y9Q A;  4PU4 C;  2PIJ A;  1S7E A;  2LLV A;  4GHJ A;  4O8B A;  4FBI A;  3JXC L;  2PUB A;  3CEC A;  2OFY A;  3DM5 A;  3D1N I;  4YG7 B;  2LYJ A;  1ZS4 A;  4Z58 A;  2IV1 A;  3TFL A;  2XCJ A;  2PXK A;  2ICT A;  3G0T A;  3OQO A;  2KZ8 A;  3LIS A;  3H5T A;  2PPX A;  1QQA A;  4IA8 A;  1LLI A;  2LYR A;  1B0N A;  4J1X A;  2PUF A;  3SCH A;  3NZL A;  3VWS A;  5K98 B;  2PXP A;  1RZS A;  3O9X A;  3B7H A;  4YG4 A;  1QB2 A;  1JWL A;  1NW3 A;  3CLC A;  2MQK A;  4Z59 A;  4JCY A;  3LQX A;  1HF0 A;  1ZZ9 A;  3VK0 A;  1LMB 3;  2HIN A;  2XXQ A;  3FYM A;  4I6T A;  2LCV A;  4JQD A;  3OP9 A;  3ME5 A;  2LYP A;  2LYS A;  3SCF A;  2CSF A;  4X4D A;  2J7W A;  1LCC A;  4DE9 A;  4Z5C A;  3RZZ A;  1OSL A;  2KEJ A;  3JXB C;  1GT0 C;  4NDW A;  5DTR A;  4DE8 A;  2PUC A;  3KL4 A;  1R69 A;  2BNM A;  2EF8 A;  1CJG A;  1IC8 A;  2PE5 A;  3SCG A;  1PNR A;  3FMY A;  2O38 A;  2AWI A;  3G7D A;  4IWR A;  3ZKC A;  3LFP A;  1CQT A;  2O4A A;  1QPZ A;  5DT2 A;  3DNV B;  2GRM A;  1QZX A;  4ER6 A;  1QQB A;  1E3O C;  1ZPQ A;  3QYX A;  2V3C C;  2WIU B;  2XIU A;  3QFI A;  4EQZ A;  3BS3 A;  3A9Z A;  2MXD A;  2L8N A;  1NER A;  4PU3 C;  1DWK A;  2IVQ A;  2HSG A;  2PXF A;  4I6R A;  3S8Q A;  2L49 A;  1JH9 A;  1DW9 A;  2LNM A;  2M4H A;  3NRO A;  1U2Z A;  1YSE A;  4Z5H A;  5DRY A;  4YAR A;  2R63 A;  2JQE A;  2OR1 L;  3KJX A;  3QF3 A;  1UTX A;  3BD1 A;  5JUW A;  4Q2J A;  3F51 A;  3QOW A;  2IU7 A;  3GZD A;  1ZAY A;  1POU A;  2YBD A;  3OWQ A;  1LCD A;  2O49 A;  5GAH i;  3FYA A;  3BDN A;  2PXU A;  2EBY A;  3R1F A;  1ZVV A;  1X2L A;  3A9X A;  2FFH A;  2CRO A;  2R1J L;  2PXQ A;  1WET A;  2LYL A;  2KEI A;  3GBF A;  1LQC A;  2AUW A;  4PU7 A;  3IVP A;  4IVZ A;  3GZD C;  4JCX A;  4I6U A;  3UWP A;  1ADR A;  3MEJ A;  3UFD A;  3A9Y A;  3GN5 B;  1RIO A;  4X4F A;  2JCG A;  2ODR D;  4EKG A;  4J1W A;  1RPE L;  2MEZ A;  2LLW A;  4ER0 A;  4F8D A;  2IVB A;  3NDB B;  1L1M A;  3F52 A;  2HCN A;  2FJR A;  1VPW A;  3GZC A;  3OKZ A;  1JFS A;  2PUE A;  5GAG i;  1AU7 A;  4X4H A;  2PXT A;  1O4X A;  1Y7Y A;  3JXD L;  5DRT A;  3OQN A;  2BJC A;  4MCT A;  2IVG A;  4X4I A;  2D5V A;  1OCT C;  1UXC A;  4X4G A;  5A7L A;  2HCS A;  2GZU A;  2VEO A;  2XXP A;  4FN3 A;  1ZZ6 A;  3ZHI A;  1ZZ8 A;  3HZI B;  1QP7 A;  2B5A A;  2XJ3 A;  5DTM A;  2HFZ A;  1RZR A;  2PXD A;  3TEP A;  3MLF A;  1QP4 A;  2IUO A;  1X57 A;  2AW6 A;  3L1P A;  1JFT A;  3G5G A;  4X4C A;  2WUS R;  3KZ3 A;  2PUG A;  1HQ1 A;  1WIZ A;  3QQ6 A;  4ER3 A;  3SX0 A;  4X4B A;  4OB4 A;  2PXE A;  3F6W A;  2L1P A;  1BDI A;  1EFA A;  4X4E A;  1PRA A;  2JVL A;  2PXV A;  1PRU A;  4GQM A;  4EZI A;  3ZPX A;  3PE5 A;  1XWR A;  2PUD A;  3QWG A;  1DUL A;  4YBA A;  3NXH A;  2KEK A;  4EKI A;  2KPJ A;  1PRV A;  3OQM A;  4EK9 A;  2A6C A;  3M9L A;  2ICP A;  2XXA A;  2EWT A;  2AXV A;  3ZHM A;  3GN5 A;  1ZZ7 A; 
#chains in the Genus database with same CATH homology
 4EQZ A;  5DRY A;  3ZPX A;  2LLW A;  3PE5 A;  4DE9 A;  3TFL A;  1NW3 A;  3GUU A;  4ER0 A;  2YBD A;  3OWQ A;  3G0T A;  4WVL A;  5DRT A;  3SR4 A;  3UWP A;  2HCN A;  3A9Z A;  2MXD A;  4ER7 A;  4ER5 A;  3NXH A;  4ER3 A;  3MEJ A;  3A9X A;  5DTM A;  5DT2 A;  2HFZ A;  4EKI A;  3GZC A;  4OBM A;  3SX0 A;  5JUW A;  5DTQ A;  2XXQ A;  4Q2J A;  4ER6 A;  2L1P A;  3A9Y A;  5DTR A;  4EK9 A;  2LLV A;  3QOX A;  3QOW A;  4DE8 A;  3M9L A;  3OKZ A;  2HCS A;  4HRA A;  3ME5 A;  2ODR D;  2LNM A;  2M4H A;  3GZD A;  4EKG A;  3TEP A;  3NRO A;  5DSX A;  2VEO A;  1U2Z A;  2XXP A;  3NZL A;  3VWS A;  4EZI A;  3R09 A;  2J7W A;  3QFI A;  3TEL A;  3GZD C;  2J7U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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