The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
22
|
sequence length |
95
|
structure length |
95
|
Chain Sequence |
ALSCGTVSADLAPCVTYLQAPNNASPPPPCCAGVKKLLAAATTTPDRQAACNCLKSAAGSIPKLNTNNAAALPGKCGVSIPYKISTSTNCNTVRF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Lipid binding protein, antimicrobial protein, allergen
|
| molecule keywords |
Lipid Transfer Protein
|
| publication title |
A novel lipid transfer protein from the pea Pisum sativum: isolation, recombinant expression, solution structure, antifungal activity, lipid binding, and allergenic properties.
pubmed doi rcsb |
| source organism |
Pisum sativum
|
| total genus |
22
|
| structure length |
95
|
| sequence length |
95
|
| ec nomenclature | |
| pdb deposition date | 2015-09-30 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00234 | Tryp_alpha_amyl | Protease inhibitor/seed storage/LTP family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Hydrophobic Seed Protein | Plant lipid-transfer and hydrophobic proteins |
#chains in the Genus database with same CATH superfamily 2N81 A; 1S6D A; 3GSH A; 2LVF A; 1UVA A; 1MID A; 1MZL A; 1HYP A; 2B5S A; 1HSS A; 1GH1 A; 2N2Z A; 1FK7 A; 4CVW C; 1N89 A; 1UVC A; 1L6H A; 1TUK A; 1FK0 A; 1FK1 A; 1W2Q A; 1AFH A; 1JTB A; 1BIP A; 1FK4 A; 1FK6 A; 2DS2 B; 5DOM A; 1SIY A; 1CZ2 A; 1RZL A; 1BE2 A; 1MZM A; 1PSY A; 2ALG A; 1SM7 A; 1TMQ B; 1BWO A; 1LIP A; 4XUW A; 1BV2 A; 1FK3 A; 2RKN A; 1FK2 A; 1B1U A; 2MAL A; 1PNB B; 1BFA A; 1UVB A; 1T12 A; 1BEA A; 1FK5 A; #chains in the Genus database with same CATH topology 2N81 A; 3H37 A; 1S6D A; 3GSH A; 2LVF A; 1UVA A; 1MID A; 1MZL A; 1MIW A; 1HYP A; 2B5S A; 1HSS A; 1GH1 A; 2N2Z A; 1FK7 A; 4CVW C; 1N89 A; 1UVC A; 1L6H A; 1MIY A; 1TUK A; 1FK0 A; 1FK1 A; 1W2Q A; 3HMJ G; 1AFH A; 1JTB A; 1BIP A; 1FK4 A; 1FK6 A; 2DS2 B; 5DOM A; 1SIY A; 1CZ2 A; 1RZL A; 1BE2 A; 1MIV A; 1MZM A; 1PSY A; 2ALG A; 1SM7 A; 1TMQ B; 2UV8 G; 1BWO A; 1LIP A; 4XUW A; 1BV2 A; 2VKZ G; 3H3A A; 1FK3 A; 2RKN A; 1FK2 A; 1B1U A; 2MAL A; 1PNB B; 1BFA A; 1UVB A; 1T12 A; 1BEA A; 1FK5 A; #chains in the Genus database with same CATH homology 2N81 A; 1S6D A; 3GSH A; 2LVF A; 1UVA A; 1MID A; 1MZL A; 1HYP A; 2B5S A; 1HSS A; 1GH1 A; 2N2Z A; 1FK7 A; 4CVW C; 1N89 A; 1UVC A; 1L6H A; 1TUK A; 1FK0 A; 1FK1 A; 1W2Q A; 1AFH A; 1JTB A; 1BIP A; 1FK4 A; 1FK6 A; 2DS2 B; 5DOM A; 1SIY A; 1CZ2 A; 1RZL A; 1BE2 A; 1MZM A; 1PSY A; 2ALG A; 1SM7 A; 1TMQ B; 1BWO A; 1LIP A; 4XUW A; 1BV2 A; 1FK3 A; 2RKN A; 1FK2 A; 1B1U A; 2MAL A; 1PNB B; 1BFA A; 1UVB A; 1T12 A; 1BEA A; 1FK5 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
