2N83A

P75ntr dd:rip2 card
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
94
structure length
94
Chain Sequence
GLYSSLPPAKREEVEKLLNGSAGDTWRHLAGELGYQPEHIDSFTHEACPVRALLASWATQDSATLDALLAALRRIQRADLVESLCSESTATSPV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural basis of death domain signaling in the p75 neurotrophin receptor
pubmed doi rcsb
source organism Homo sapiens
molecule tags Signaling protein/transferase
molecule keywords Tumor necrosis factor receptor superfamily member 16
total genus 27
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2015-10-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00531 Death Death domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 2n83A00
3LQRA 1A1WA 1D2ZB 3LQQA 4JQWA 1UCPA 2DBGA 1N3KA 2MB9A 4E9MA 4N1LA 4UZ0A 3YGSP 2A5YB 4N1KA 4M9XA 4NQKA 2MN4A 4RHWE 2N80A 4JUPA 2N00A 2B1WA 4ZBWA 2MS8A 2M5VA 3J6JA 1D2ZA 2L9MA 1DGNA 2OF5H 3CL3A 4F44A 2P1HA 3MOPA 1C15A 4P4HA 1CY5A 2YVIA 2N97A 3MOPG 1Z6TA 2IB1A 2A9IA 4IZAB 3YGSC 2L6AA 1WH4A 2NSNA 4FH0A 4M9ZA 4F42A 3QF2A 4A2QA 2GF5A 4O7QA 2D96A 2NAQA 2DBFA 2BBZA 1FADA 3EZQA 1PN5A 4P4HI 2YGSA 3KATA 4QOBA 2YQFA 3MOPK 2KN6A 4M9SA 4O9FA 4O6XA 3J63A 4N1JA 4IZ5E 4EWIA 2F1SA 3CRDA 2KM6A 2DBDA 4LWDA 3T6PA 2LWDA 4I16A 1ICHA 2DO9A 4D8OA 2N1FA 2YU0A 1DDFA 2MPCA 1NGRA 2N83A 1YGOA 2LWEA 2VGQA 4A2WA 2MS7A 1WXPA 2BBRA 3EZQB 4IZ7B 2DBHA 1A1ZA 2N7ZA 2OF5A 4DWNA 2G7RA 2HM2Q 1WMGA 1CWWA 2O71A 1E3YA 4RHWA 1E41A 2NZ7A 2LS7A 4O9LA
chains in the Genus database with same CATH superfamily
3LQRA 1A1WA 1D2ZB 3LQQA 4JQWA 1UCPA 2DBGA 1N3KA 2MB9A 4E9MA 4N1LA 4UZ0A 3YGSP 2A5YB 4N1KA 4M9XA 4NQKA 2MN4A 4RHWE 2N80A 4JUPA 2N00A 2B1WA 4ZBWA 2MS8A 2M5VA 3J6JA 1D2ZA 2L9MA 1DGNA 2OF5H 3CL3A 4F44A 2P1HA 3MOPA 1C15A 4P4HA 1CY5A 2YVIA 2N97A 3MOPG 1Z6TA 2IB1A 2A9IA 4IZAB 3YGSC 2L6AA 1WH4A 2NSNA 4FH0A 4M9ZA 4F42A 3QF2A 4A2QA 2GF5A 4O7QA 2D96A 2NAQA 2DBFA 2BBZA 1FADA 3EZQA 1PN5A 4P4HI 2YGSA 3KATA 4QOBA 2YQFA 3MOPK 2KN6A 4M9SA 4O9FA 2MJMA 4O6XA 3J63A 4N1JA 4IZ5E 4EWIA 2F1SA 3CRDA 2KM6A 2DBDA 4LWDA 3T6PA 2LWDA 4I16A 1ICHA 2DO9A 4D8OA 2N1FA 2YU0A 1DDFA 2MPCA 1NGRA 2N83A 1YGOA 2LWEA 2VGQA 4A2WA 2MS7A 1WXPA 2BBRA 3EZQB 4IZ7B 2DBHA 1A1ZA 2N7ZA 2OF5A 4DWNA 2G7RA 2HM2Q 1WMGA 1CWWA 2O71A 1E3YA 4RHWA 1E41A 2NZ7A 2XV9A 2LS7A 4O9LA
chains in the Genus database with same CATH topology
3LQRA 1A1WA 1D2ZB 3LQQA 4JQWA 1UCPA 2DBGA 1N3KA 2MB9A 4E9MA 4N1LA 4UZ0A 3YGSP 2A5YB 4N1KA 4M9XA 4NQKA 2MN4A 4RHWE 2N80A 4JUPA 2N00A 2B1WA 4ZBWA 2MS8A 2M5VA 3J6JA 1D2ZA 2L9MA 1DGNA 2OF5H 3CL3A 4F44A 2P1HA 3MOPA 1C15A 4P4HA 1CY5A 2YVIA 2N97A 3MOPG 1Z6TA 2IB1A 2A9IA 4IZAB 3YGSC 2L6AA 1WH4A 2NSNA 4FH0A 4M9ZA 4F42A 3QF2A 4A2QA 2GF5A 4O7QA 2D96A 2NAQA 2DBFA 2BBZA 1FADA 3EZQA 1PN5A 4P4HI 2YGSA 3KATA 4QOBA 2YQFA 3MOPK 2KN6A 4M9SA 4O9FA 2MJMA 4O6XA 3J63A 4N1JA 4IZ5E 4EWIA 2F1SA 3CRDA 2KM6A 2DBDA 4LWDA 3T6PA 2LWDA 4I16A 1ICHA 2DO9A 4D8OA 2N1FA 2YU0A 1DDFA 2MPCA 1NGRA 2N83A 1YGOA 2LWEA 2VGQA 4A2WA 2MS7A 1WXPA 2BBRA 3EZQB 4IZ7B 2DBHA 1A1ZA 2N7ZA 2OF5A 4DWNA 2G7RA 2HM2Q 1WMGA 1CWWA 2O71A 1E3YA 4RHWA 1E41A 2NZ7A 2XV9A 2LS7A 4O9LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LQR A;  1A1W A;  1D2Z B;  3LQQ A;  4JQW A;  1UCP A;  2DBG A;  1N3K A;  2MB9 A;  4E9M A;  4N1L A;  4UZ0 A;  3YGS P;  2A5Y B;  4N1K A;  4M9X A;  4NQK A;  2MN4 A;  4RHW E;  2N80 A;  4JUP A;  2N00 A;  2B1W A;  4ZBW A;  2MS8 A;  2M5V A;  3J6J A;  1D2Z A;  2L9M A;  1DGN A;  2OF5 H;  3CL3 A;  4F44 A;  2P1H A;  3MOP A;  1C15 A;  4P4H A;  1CY5 A;  2YVI A;  2N97 A;  3MOP G;  1Z6T A;  2IB1 A;  2A9I A;  4IZA B;  3YGS C;  2L6A A;  1WH4 A;  2NSN A;  4FH0 A;  4M9Z A;  4F42 A;  3QF2 A;  4A2Q A;  2GF5 A;  4O7Q A;  2D96 A;  2NAQ A;  2DBF A;  2BBZ A;  1FAD A;  3EZQ A;  1PN5 A;  4P4H I;  2YGS A;  3KAT A;  4QOB A;  2YQF A;  3MOP K;  2KN6 A;  4M9S A;  4O9F A;  4O6X A;  3J63 A;  4N1J A;  4IZ5 E;  4EWI A;  2F1S A;  3CRD A;  2KM6 A;  2DBD A;  4LWD A;  3T6P A;  2LWD A;  4I16 A;  1ICH A;  2DO9 A;  4D8O A;  2N1F A;  2YU0 A;  1DDF A;  2MPC A;  1NGR A;  2N83 A;  1YGO A;  2LWE A;  2VGQ A;  4A2W A;  2MS7 A;  1WXP A;  2BBR A;  3EZQ B;  4IZ7 B;  2DBH A;  1A1Z A;  2N7Z A;  2OF5 A;  4DWN A;  2G7R A;  2HM2 Q;  1WMG A;  1CWW A;  2O71 A;  1E3Y A;  4RHW A;  1E41 A;  2NZ7 A;  2LS7 A;  4O9L A; 
#chains in the Genus database with same CATH topology
 3LQR A;  1A1W A;  1D2Z B;  3LQQ A;  4JQW A;  1UCP A;  2DBG A;  1N3K A;  2MB9 A;  4E9M A;  4N1L A;  4UZ0 A;  3YGS P;  2A5Y B;  4N1K A;  4M9X A;  4NQK A;  2MN4 A;  4RHW E;  2N80 A;  4JUP A;  2N00 A;  2B1W A;  4ZBW A;  2MS8 A;  2M5V A;  3J6J A;  1D2Z A;  2L9M A;  1DGN A;  2OF5 H;  3CL3 A;  4F44 A;  2P1H A;  3MOP A;  1C15 A;  4P4H A;  1CY5 A;  2YVI A;  2N97 A;  3MOP G;  1Z6T A;  2IB1 A;  2A9I A;  4IZA B;  3YGS C;  2L6A A;  1WH4 A;  2NSN A;  4FH0 A;  4M9Z A;  4F42 A;  3QF2 A;  4A2Q A;  2GF5 A;  4O7Q A;  2D96 A;  2NAQ A;  2DBF A;  2BBZ A;  1FAD A;  3EZQ A;  1PN5 A;  4P4H I;  2YGS A;  3KAT A;  4QOB A;  2YQF A;  3MOP K;  2KN6 A;  4M9S A;  4O9F A;  2MJM A;  4O6X A;  3J63 A;  4N1J A;  4IZ5 E;  4EWI A;  2F1S A;  3CRD A;  2KM6 A;  2DBD A;  4LWD A;  3T6P A;  2LWD A;  4I16 A;  1ICH A;  2DO9 A;  4D8O A;  2N1F A;  2YU0 A;  1DDF A;  2MPC A;  1NGR A;  2N83 A;  1YGO A;  2LWE A;  2VGQ A;  4A2W A;  2MS7 A;  1WXP A;  2BBR A;  3EZQ B;  4IZ7 B;  2DBH A;  1A1Z A;  2N7Z A;  2OF5 A;  4DWN A;  2G7R A;  2HM2 Q;  1WMG A;  1CWW A;  2O71 A;  1E3Y A;  4RHW A;  1E41 A;  2NZ7 A;  2XV9 A;  2LS7 A;  4O9L A; 
#chains in the Genus database with same CATH homology
 3LQR A;  1A1W A;  1D2Z B;  3LQQ A;  4JQW A;  1UCP A;  2DBG A;  1N3K A;  2MB9 A;  4E9M A;  4N1L A;  4UZ0 A;  3YGS P;  2A5Y B;  4N1K A;  4M9X A;  4NQK A;  2MN4 A;  4RHW E;  2N80 A;  4JUP A;  2N00 A;  2B1W A;  4ZBW A;  2MS8 A;  2M5V A;  3J6J A;  1D2Z A;  2L9M A;  1DGN A;  2OF5 H;  3CL3 A;  4F44 A;  2P1H A;  3MOP A;  1C15 A;  4P4H A;  1CY5 A;  2YVI A;  2N97 A;  3MOP G;  1Z6T A;  2IB1 A;  2A9I A;  4IZA B;  3YGS C;  2L6A A;  1WH4 A;  2NSN A;  4FH0 A;  4M9Z A;  4F42 A;  3QF2 A;  4A2Q A;  2GF5 A;  4O7Q A;  2D96 A;  2NAQ A;  2DBF A;  2BBZ A;  1FAD A;  3EZQ A;  1PN5 A;  4P4H I;  2YGS A;  3KAT A;  4QOB A;  2YQF A;  3MOP K;  2KN6 A;  4M9S A;  4O9F A;  2MJM A;  4O6X A;  3J63 A;  4N1J A;  4IZ5 E;  4EWI A;  2F1S A;  3CRD A;  2KM6 A;  2DBD A;  4LWD A;  3T6P A;  2LWD A;  4I16 A;  1ICH A;  2DO9 A;  4D8O A;  2N1F A;  2YU0 A;  1DDF A;  2MPC A;  1NGR A;  2N83 A;  1YGO A;  2LWE A;  2VGQ A;  4A2W A;  2MS7 A;  1WXP A;  2BBR A;  3EZQ B;  4IZ7 B;  2DBH A;  1A1Z A;  2N7Z A;  2OF5 A;  4DWN A;  2G7R A;  2HM2 Q;  1WMG A;  1CWW A;  2O71 A;  1E3Y A;  4RHW A;  1E41 A;  2NZ7 A;  2XV9 A;  2LS7 A;  4O9L A; 
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similar chains in the pdb database (?% sequence similarity)

 
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