2NL9A

Crystal structure of the mcl-1:bim bh3 complex
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
151
structure length
142
Chain Sequence
DDLYRQSLEIISRYLREQATGSGAAGRRALETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFVAKHLKTINQESCIEPLAESITDVLVRTKRDWLVKQRGWDGFVEFFHVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Apoptosis
molecule keywords FUSION PROTEIN CONSISTING OF Induced myeloid leukemia cell d
publication title Structural insights into the degradation of Mcl-1 induced by BH3 domains.
pubmed doi rcsb
source organism Mus musculus
total genus 56
structure length 142
sequence length 151
ec nomenclature
pdb deposition date 2006-10-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.437.10 Mainly Alpha Orthogonal Bundle Apoptosis Regulator Bcl-x Blc2-like 2nl9A01
1TY4A 2MEJA 3BL2A 3MK8A 4U2UA 4BPJA 1R2IA 2YV6A 5IEZA 4BD6A 3PK1A 4QNQA 3KJ2A 4BD8A 5IF4A 1BXLA 2VM6A 4BDUA 4B4SA 4BD7A 1Q59A 2NLAA 2JM6B 2PQKA 5FDOA 2WH6A 3QBRA 4YK9A 4YJ4A 4G35A 4S0OA 2W3LA 3IO9A 2ME8A 1K3KA 2VOGA 4ZIEA 5C6HA 1R2EA 2RODA 2KBWA 3IHDA 4ZBIA 2O2FA 3D7VA 5KU9A 1R2DA 5JSBA 1OHUA 2O22A 4ZBFA 1F16A 3MQPA 1R2GA 3ILCA 1G5JA 3WIYA 3WIXA 2ROCA 4BD2A 1YSGA 2VOIA 3IIHA 3IHCA 1GJHA 4ZIHA 3I1HA 3KJ0A 4U2VA 2V6QA 1ZY3A 4HW4A 4ZIFA 2NL9A 2BZWA 4OQ6A 5FC4A 4MI8A 2XPXA 2M5BA 2A5YA 1MK3A 4BPIA 3KJ1A 2VOHA 4ZIIA 4OYDA 4QVXA 5KTGA 2LR1A 2IMSA 1WSXA 2IMTA 1O0LA 1PQ0A 2O21A 5C3FA 1DDBA 4WMRA 2XA0A 3DVUA 1YSIA 2B48A 1MAZA 2O2MA 3KZ0A 4OQ5A 1PQ1A 4S0PA 2JCNA 2O2NA 5FMIA 4ZIGA 2ABOA 3CVAX 3IIGA 1LXLA 3IHEA 2BIDA 2MHSA 4K5BC 4ZEQA 1R2HA 1YSWA 4HW2A 2KUAA 2VOFA 5FDRA 4HW3A 1YSNA 2K7WA 1AF3A 1G5MA
chains in the Genus database with same CATH superfamily
1TY4A 2MEJA 3BL2A 3MK8A 4M0SA 4U2UA 4BPJA 1R2IA 2YV6A 2UXEA 5IEZA 4BD6A 3PK1A 4QNQA 3KJ2A 4BD8A 5IF4A 1BXLA 2VM6A 4BDUA 2VTYA 4B4SA 4BBBA 4BD7A 1Q59A 2NLAA 2JM6B 2PQKA 5FDOA 2WH6A 3QBRA 4YK9A 4YJ4A 4G35A 4S0OA 2W3LA 3IO9A 2ME8A 1K3KA 2VOGA 4ZIEA 5C6HA 1R2EA 2RODA 2KBWA 3IHDA 4ZBIA 2O2FA 3D7VA 5KU9A 2O42A 1R2DA 5JSBA 1OHUA 2O22A 4ZBFA 1F16A 3MQPA 1R2GA 3ILCA 1G5JA 3WIYA 3WIXA 2ROCA 4BD2A 1YSGA 2VOIA 2VVXA 3IIHA 1GJHA 3IHCA 4ZIHA 3I1HA 3KJ0A 4U2VA 4D2LA 2V6QA 1ZY3A 4HW4A 4UF3A 2JBXA 2K36A 4ZIFA 2NL9A 2BZWA 4OQ6A 5FC4A 4MI8A 2XPXA 2M5BA 2A5YA 1MK3A 4BPIA 3KJ1A 2VOHA 4ZIIA 4BBDA 4OYDA 4QVXA 5KTGA 2LR1A 2IMSA 2VVWA 1WSXA 2IMTA 1O0LA 1PQ0A 2O21A 5C3FA 1DDBA 4WMRA 2XA0A 2JBYA 3DVUA 4UF2A 1YSIA 4UF1A 2B48A 3JRVA 1MAZA 2O2MA 3KZ0A 4OQ5A 1PQ1A 4S0PA 2JCNA 2O2NA 5FMIA 4ZIGA 4BBCA 2ABOA 3CVAX 3IIGA 1LXLA 2I39A 4LQKA 3IHEA 2BIDA 2MHSA 4K5BC 4ZEQA 1R2HA 1YSWA 4HW2A 2KUAA 2VOFA 5FDRA 4D2MA 4HW3A 2VVYA 1YSNA 2K7WA 1AF3A 1G5MA
chains in the Genus database with same CATH topology
1TY4A 2MEJA 3BL2A 3MK8A 4U2UA 4BPJA 1R2IA 2YV6A 5IEZA 4BD6A 3PK1A 4QNQA 3KJ2A 4BD8A 5IF4A 1BXLA 2VM6A 4BDUA 4B4SA 4BD7A 1Q59A 2NLAA 2JM6B 2PQKA 5FDOA 2WH6A 3QBRA 4YK9A 4YJ4A 4G35A 4S0OA 2W3LA 3IO9A 2ME8A 1K3KA 2VOGA 4ZIEA 5C6HA 1R2EA 2RODA 2KBWA 3IHDA 4ZBIA 2O2FA 3D7VA 5KU9A 1R2DA 5JSBA 1OHUA 2O22A 4ZBFA 1F16A 3MQPA 1R2GA 3ILCA 1G5JA 3WIYA 3WIXA 2ROCA 4BD2A 1YSGA 2VOIA 3IIHA 3IHCA 1GJHA 4ZIHA 3I1HA 3KJ0A 4U2VA 2V6QA 1ZY3A 4HW4A 4ZIFA 2NL9A 2BZWA 4OQ6A 5FC4A 4MI8A 2XPXA 2M5BA 2A5YA 1MK3A 4BPIA 3KJ1A 2VOHA 4ZIIA 4OYDA 4QVXA 5KTGA 2LR1A 2IMSA 1WSXA 2IMTA 1O0LA 1PQ0A 2O21A 5C3FA 1DDBA 4WMRA 2XA0A 3DVUA 1YSIA 2B48A 1MAZA 2O2MA 3KZ0A 4OQ5A 1PQ1A 4S0PA 2JCNA 2O2NA 5FMIA 4ZIGA 2ABOA 3CVAX 3IIGA 1LXLA 3IHEA 2BIDA 2MHSA 4K5BC 4ZEQA 1R2HA 1YSWA 4HW2A 2KUAA 2VOFA 5FDRA 4HW3A 1YSNA 2K7WA 1AF3A 1G5MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TY4 A;  2MEJ A;  3BL2 A;  3MK8 A;  4U2U A;  4BPJ A;  1R2I A;  2YV6 A;  5IEZ A;  4BD6 A;  3PK1 A;  4QNQ A;  3KJ2 A;  4BD8 A;  5IF4 A;  1BXL A;  2VM6 A;  4BDU A;  4B4S A;  4BD7 A;  1Q59 A;  2NLA A;  2JM6 B;  2PQK A;  5FDO A;  2WH6 A;  3QBR A;  4YK9 A;  4YJ4 A;  4G35 A;  4S0O A;  2W3L A;  3IO9 A;  2ME8 A;  1K3K A;  2VOG A;  4ZIE A;  5C6H A;  1R2E A;  2ROD A;  2KBW A;  3IHD A;  4ZBI A;  2O2F A;  3D7V A;  5KU9 A;  1R2D A;  5JSB A;  1OHU A;  2O22 A;  4ZBF A;  1F16 A;  3MQP A;  1R2G A;  3ILC A;  1G5J A;  3WIY A;  3WIX A;  2ROC A;  4BD2 A;  1YSG A;  2VOI A;  3IIH A;  3IHC A;  1GJH A;  4ZIH A;  3I1H A;  3KJ0 A;  4U2V A;  2V6Q A;  1ZY3 A;  4HW4 A;  4ZIF A;  2NL9 A;  2BZW A;  4OQ6 A;  5FC4 A;  4MI8 A;  2XPX A;  2M5B A;  2A5Y A;  1MK3 A;  4BPI A;  3KJ1 A;  2VOH A;  4ZII A;  4OYD A;  4QVX A;  5KTG A;  2LR1 A;  2IMS A;  1WSX A;  2IMT A;  1O0L A;  1PQ0 A;  2O21 A;  5C3F A;  1DDB A;  4WMR A;  2XA0 A;  3DVU A;  1YSI A;  2B48 A;  1MAZ A;  2O2M A;  3KZ0 A;  4OQ5 A;  1PQ1 A;  4S0P A;  2JCN A;  2O2N A;  5FMI A;  4ZIG A;  2ABO A;  3CVA X;  3IIG A;  1LXL A;  3IHE A;  2BID A;  2MHS A;  4K5B C;  4ZEQ A;  1R2H A;  1YSW A;  4HW2 A;  2KUA A;  2VOF A;  5FDR A;  4HW3 A;  1YSN A;  2K7W A;  1AF3 A;  1G5M A; 
#chains in the Genus database with same CATH topology
 1TY4 A;  2MEJ A;  3BL2 A;  3MK8 A;  4M0S A;  4U2U A;  4BPJ A;  1R2I A;  2YV6 A;  2UXE A;  5IEZ A;  4BD6 A;  3PK1 A;  4QNQ A;  3KJ2 A;  4BD8 A;  5IF4 A;  1BXL A;  2VM6 A;  4BDU A;  2VTY A;  4B4S A;  4BBB A;  4BD7 A;  1Q59 A;  2NLA A;  2JM6 B;  2PQK A;  5FDO A;  2WH6 A;  3QBR A;  4YK9 A;  4YJ4 A;  4G35 A;  4S0O A;  2W3L A;  3IO9 A;  2ME8 A;  1K3K A;  2VOG A;  4ZIE A;  5C6H A;  1R2E A;  2ROD A;  2KBW A;  3IHD A;  4ZBI A;  2O2F A;  3D7V A;  5KU9 A;  2O42 A;  1R2D A;  5JSB A;  1OHU A;  2O22 A;  4ZBF A;  1F16 A;  3MQP A;  1R2G A;  3ILC A;  1G5J A;  3WIY A;  3WIX A;  2ROC A;  4BD2 A;  1YSG A;  2VOI A;  2VVX A;  3IIH A;  1GJH A;  3IHC A;  4ZIH A;  3I1H A;  3KJ0 A;  4U2V A;  4D2L A;  2V6Q A;  1ZY3 A;  4HW4 A;  4UF3 A;  2JBX A;  2K36 A;  4ZIF A;  2NL9 A;  2BZW A;  4OQ6 A;  5FC4 A;  4MI8 A;  2XPX A;  2M5B A;  2A5Y A;  1MK3 A;  4BPI A;  3KJ1 A;  2VOH A;  4ZII A;  4BBD A;  4OYD A;  4QVX A;  5KTG A;  2LR1 A;  2IMS A;  2VVW A;  1WSX A;  2IMT A;  1O0L A;  1PQ0 A;  2O21 A;  5C3F A;  1DDB A;  4WMR A;  2XA0 A;  2JBY A;  3DVU A;  4UF2 A;  1YSI A;  4UF1 A;  2B48 A;  3JRV A;  1MAZ A;  2O2M A;  3KZ0 A;  4OQ5 A;  1PQ1 A;  4S0P A;  2JCN A;  2O2N A;  5FMI A;  4ZIG A;  4BBC A;  2ABO A;  3CVA X;  3IIG A;  1LXL A;  2I39 A;  4LQK A;  3IHE A;  2BID A;  2MHS A;  4K5B C;  4ZEQ A;  1R2H A;  1YSW A;  4HW2 A;  2KUA A;  2VOF A;  5FDR A;  4D2M A;  4HW3 A;  2VVY A;  1YSN A;  2K7W A;  1AF3 A;  1G5M A; 
#chains in the Genus database with same CATH homology
 1TY4 A;  2MEJ A;  3BL2 A;  3MK8 A;  4U2U A;  4BPJ A;  1R2I A;  2YV6 A;  5IEZ A;  4BD6 A;  3PK1 A;  4QNQ A;  3KJ2 A;  4BD8 A;  5IF4 A;  1BXL A;  2VM6 A;  4BDU A;  4B4S A;  4BD7 A;  1Q59 A;  2NLA A;  2JM6 B;  2PQK A;  5FDO A;  2WH6 A;  3QBR A;  4YK9 A;  4YJ4 A;  4G35 A;  4S0O A;  2W3L A;  3IO9 A;  2ME8 A;  1K3K A;  2VOG A;  4ZIE A;  5C6H A;  1R2E A;  2ROD A;  2KBW A;  3IHD A;  4ZBI A;  2O2F A;  3D7V A;  5KU9 A;  1R2D A;  5JSB A;  1OHU A;  2O22 A;  4ZBF A;  1F16 A;  3MQP A;  1R2G A;  3ILC A;  1G5J A;  3WIY A;  3WIX A;  2ROC A;  4BD2 A;  1YSG A;  2VOI A;  3IIH A;  3IHC A;  1GJH A;  4ZIH A;  3I1H A;  3KJ0 A;  4U2V A;  2V6Q A;  1ZY3 A;  4HW4 A;  4ZIF A;  2NL9 A;  2BZW A;  4OQ6 A;  5FC4 A;  4MI8 A;  2XPX A;  2M5B A;  2A5Y A;  1MK3 A;  4BPI A;  3KJ1 A;  2VOH A;  4ZII A;  4OYD A;  4QVX A;  5KTG A;  2LR1 A;  2IMS A;  1WSX A;  2IMT A;  1O0L A;  1PQ0 A;  2O21 A;  5C3F A;  1DDB A;  4WMR A;  2XA0 A;  3DVU A;  1YSI A;  2B48 A;  1MAZ A;  2O2M A;  3KZ0 A;  4OQ5 A;  1PQ1 A;  4S0P A;  2JCN A;  2O2N A;  5FMI A;  4ZIG A;  2ABO A;  3CVA X;  3IIG A;  1LXL A;  3IHE A;  2BID A;  2MHS A;  4K5B C;  4ZEQ A;  1R2H A;  1YSW A;  4HW2 A;  2KUA A;  2VOF A;  5FDR A;  4HW3 A;  1YSN A;  2K7W A;  1AF3 A;  1G5M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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