2NM2A

Crystal structure of dihydroneopterin aldolase from s. aureus in complex with (1s,2r)-neopterin at 1.50 angstrom resolution
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
121
structure length
121
Chain Sequence
MQDTIFLKGMRFYGYHGALSAENEIGQIFKVDVTLKVDLSEAGRTDNVIDTVHYGEVFEEVKSIMEGKAVNLLEHLAERIANRINSQYNRVMETKVRITKENPPIPGHYDGVGIEIVRENK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Dihydroneopterin aldolase
publication title Structural basis for the aldolase and epimerase activities of Staphylococcus aureus dihydroneopterin aldolase.
pubmed doi rcsb
source organism Staphylococcus aureus
total genus 24
structure length 121
sequence length 121
chains with identical sequence B, C, D
ec nomenclature ec 4.1.2.25: Dihydroneopterin aldolase.
pdb deposition date 2006-10-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02152 FolB Dihydroneopterin aldolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1130.10 Alpha Beta 2-Layer Sandwich GTP Cyclohydrolase I, domain 2 GTP Cyclohydrolase I, domain 2 2nm2A00
1N3SA 1A8RA 1RS4A 1RSDA 1WUQA 1DHNA 2CG8A 2O90A 4UQFA 3UXVA 4IQIA 5F3MA 4FGCA 1IS8A 1Z9WA 1NBUB 1RRWA 3O1KA 1RSIA 1FB1A 2NM3A 1SQLA 1FBXA 3RJ4A 3S19A 1RRIA 4AEYA 4F8BA 1WM9A 3RZPA 1A9CA 1U68A 1N3RA 1WPLA 1N3TA 1GTPA 1IS7A 2NM2A 3V9OA 2DHNA 3BP1A 4DU6A 1WURA 1RRYA 4GHMA 1RS2A 1NBUA 3R2EA 5FARA 3UXJA 1B9LA 1NBUC
chains in the Genus database with same CATH superfamily
1N3SA 1A8RA 1RS4A 1RSDA 1WUQA 1DHNA 2CG8A 2O90A 4UQFA 3UXVA 4IQIA 5F3MA 4FGCA 1IS8A 1Z9WA 1NBUB 1RRWA 3O1KA 1RSIA 1FB1A 2NM3A 1SQLA 1FBXA 3RJ4A 3S19A 1RRIA 4AEYA 4F8BA 1WM9A 3RZPA 1A9CA 1U68A 1N3RA 1WPLA 1N3TA 1GTPA 1IS7A 2NM2A 3V9OA 2DHNA 3BP1A 4DU6A 1WURA 1RRYA 4GHMA 1RS2A 1NBUA 3R2EA 5FARA 3UXJA 1B9LA 1NBUC
chains in the Genus database with same CATH topology
1N3SA 1A8RA 1RS4A 1RSDA 1WUQA 1DHNA 2CG8A 2O90A 4UQFA 3UXVA 4IQIA 5F3MA 4FGCA 1IS8A 1Z9WA 1NBUB 1RRWA 3O1KA 1RSIA 1FB1A 2NM3A 1SQLA 1FBXA 3RJ4A 3S19A 1RRIA 4AEYA 4F8BA 1WM9A 3RZPA 1A9CA 1U68A 1N3RA 1WPLA 1N3TA 1GTPA 1IS7A 2NM2A 3V9OA 2DHNA 3BP1A 4DU6A 1WURA 1RRYA 4GHMA 1RS2A 1NBUA 3R2EA 5FARA 3UXJA 1B9LA 1NBUC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N3S A;  1A8R A;  1RS4 A;  1RSD A;  1WUQ A;  1DHN A;  2CG8 A;  2O90 A;  4UQF A;  3UXV A;  4IQI A;  5F3M A;  4FGC A;  1IS8 A;  1Z9W A;  1NBU B;  1RRW A;  3O1K A;  1RSI A;  1FB1 A;  2NM3 A;  1SQL A;  1FBX A;  3RJ4 A;  3S19 A;  1RRI A;  4AEY A;  4F8B A;  1WM9 A;  3RZP A;  1A9C A;  1U68 A;  1N3R A;  1WPL A;  1N3T A;  1GTP A;  1IS7 A;  2NM2 A;  3V9O A;  2DHN A;  3BP1 A;  4DU6 A;  1WUR A;  1RRY A;  4GHM A;  1RS2 A;  1NBU A;  3R2E A;  5FAR A;  3UXJ A;  1B9L A;  1NBU C; 
#chains in the Genus database with same CATH topology
 1N3S A;  1A8R A;  1RS4 A;  1RSD A;  1WUQ A;  1DHN A;  2CG8 A;  2O90 A;  4UQF A;  3UXV A;  4IQI A;  5F3M A;  4FGC A;  1IS8 A;  1Z9W A;  1NBU B;  1RRW A;  3O1K A;  1RSI A;  1FB1 A;  2NM3 A;  1SQL A;  1FBX A;  3RJ4 A;  3S19 A;  1RRI A;  4AEY A;  4F8B A;  1WM9 A;  3RZP A;  1A9C A;  1U68 A;  1N3R A;  1WPL A;  1N3T A;  1GTP A;  1IS7 A;  2NM2 A;  3V9O A;  2DHN A;  3BP1 A;  4DU6 A;  1WUR A;  1RRY A;  4GHM A;  1RS2 A;  1NBU A;  3R2E A;  5FAR A;  3UXJ A;  1B9L A;  1NBU C; 
#chains in the Genus database with same CATH homology
 1N3S A;  1A8R A;  1RS4 A;  1RSD A;  1WUQ A;  1DHN A;  2CG8 A;  2O90 A;  4UQF A;  3UXV A;  4IQI A;  5F3M A;  4FGC A;  1IS8 A;  1Z9W A;  1NBU B;  1RRW A;  3O1K A;  1RSI A;  1FB1 A;  2NM3 A;  1SQL A;  1FBX A;  3RJ4 A;  3S19 A;  1RRI A;  4AEY A;  4F8B A;  1WM9 A;  3RZP A;  1A9C A;  1U68 A;  1N3R A;  1WPL A;  1N3T A;  1GTP A;  1IS7 A;  2NM2 A;  3V9O A;  2DHN A;  3BP1 A;  4DU6 A;  1WUR A;  1RRY A;  4GHM A;  1RS2 A;  1NBU A;  3R2E A;  5FAR A;  3UXJ A;  1B9L A;  1NBU C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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