2NM3A

Crystal structure of dihydroneopterin aldolase from s. aureus in complex with (1s,2s)-monapterin at 1.68 angstrom resolution
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
121
structure length
121
Chain Sequence
MQDTIFLKGMRFYGYHGALSAENEIGQIFKVDVTLKVDLSEAGRTDNVIDTVHYGEVFEEVKSIMEGKAVNLLEHLAERIANRINSQYNRVMETKVRITKENPPIPGHYDGVGIEIVRENK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Dihydroneopterin aldolase
publication title Structural basis for the aldolase and epimerase activities of Staphylococcus aureus dihydroneopterin aldolase.
pubmed doi rcsb
source organism Staphylococcus aureus
total genus 30
structure length 121
sequence length 121
ec nomenclature ec 4.1.2.25: Dihydroneopterin aldolase.
pdb deposition date 2006-10-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02152 FolB Dihydroneopterin aldolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1130.10 Alpha Beta 2-Layer Sandwich GTP Cyclohydrolase I, domain 2 GTP Cyclohydrolase I, domain 2 2nm3A00
3O1KA 4DU6A 3BP1A 1GTPA 1N3RA 1WURA 2CG8A 4FGCA 1RSDA 1RSIA 3V9OA 1WPLA 4GHMA 1RRWA 2NM2A 1NBUA 1IS7A 1WUQA 4IQIA 1FB1A 1FBXA 1RRYA 1RS4A 5FARA 1NBUC 4UQFA 1NBUB 3R2EA 1Z9WA 3S19A 1B9LA 1WM9A 2O90A 4F8BA 1N3TA 1RRIA 3UXJA 2DHNA 1RS2A 3RJ4A 4AEYA 1A8RA 1DHNA 1U68A 3UXVA 1A9CA 1SQLA 1IS8A 5F3MA 1N3SA 2NM3A 3RZPA
chains in the Genus database with same CATH superfamily
3O1KA 4DU6A 3BP1A 1GTPA 1N3RA 1WURA 2CG8A 4FGCA 1RSDA 1RSIA 3V9OA 1WPLA 4GHMA 1RRWA 2NM2A 1NBUA 1IS7A 1WUQA 4IQIA 1FB1A 1FBXA 1RRYA 1RS4A 5FARA 1NBUC 4UQFA 1NBUB 3R2EA 1Z9WA 3S19A 1B9LA 1WM9A 2O90A 4F8BA 1N3TA 1RRIA 3UXJA 2DHNA 1RS2A 3RJ4A 4AEYA 1A8RA 1DHNA 1U68A 3UXVA 1A9CA 1SQLA 1IS8A 5F3MA 1N3SA 2NM3A 3RZPA
chains in the Genus database with same CATH topology
3O1KA 4DU6A 3BP1A 1GTPA 1N3RA 1WURA 2CG8A 4FGCA 1RSDA 1RSIA 3V9OA 1WPLA 4GHMA 1RRWA 2NM2A 1NBUA 1IS7A 1WUQA 4IQIA 1FB1A 1FBXA 1RRYA 1RS4A 5FARA 1NBUC 4UQFA 1NBUB 3R2EA 1Z9WA 3S19A 1B9LA 1WM9A 2O90A 4F8BA 1N3TA 1RRIA 3UXJA 2DHNA 1RS2A 3RJ4A 4AEYA 1A8RA 1DHNA 1U68A 3UXVA 1A9CA 1SQLA 1IS8A 5F3MA 1N3SA 2NM3A 3RZPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3O1K A;  4DU6 A;  3BP1 A;  1GTP A;  1N3R A;  1WUR A;  2CG8 A;  4FGC A;  1RSD A;  1RSI A;  3V9O A;  1WPL A;  4GHM A;  1RRW A;  2NM2 A;  1NBU A;  1IS7 A;  1WUQ A;  4IQI A;  1FB1 A;  1FBX A;  1RRY A;  1RS4 A;  5FAR A;  1NBU C;  4UQF A;  1NBU B;  3R2E A;  1Z9W A;  3S19 A;  1B9L A;  1WM9 A;  2O90 A;  4F8B A;  1N3T A;  1RRI A;  3UXJ A;  2DHN A;  1RS2 A;  3RJ4 A;  4AEY A;  1A8R A;  1DHN A;  1U68 A;  3UXV A;  1A9C A;  1SQL A;  1IS8 A;  5F3M A;  1N3S A;  2NM3 A;  3RZP A; 
#chains in the Genus database with same CATH topology
 3O1K A;  4DU6 A;  3BP1 A;  1GTP A;  1N3R A;  1WUR A;  2CG8 A;  4FGC A;  1RSD A;  1RSI A;  3V9O A;  1WPL A;  4GHM A;  1RRW A;  2NM2 A;  1NBU A;  1IS7 A;  1WUQ A;  4IQI A;  1FB1 A;  1FBX A;  1RRY A;  1RS4 A;  5FAR A;  1NBU C;  4UQF A;  1NBU B;  3R2E A;  1Z9W A;  3S19 A;  1B9L A;  1WM9 A;  2O90 A;  4F8B A;  1N3T A;  1RRI A;  3UXJ A;  2DHN A;  1RS2 A;  3RJ4 A;  4AEY A;  1A8R A;  1DHN A;  1U68 A;  3UXV A;  1A9C A;  1SQL A;  1IS8 A;  5F3M A;  1N3S A;  2NM3 A;  3RZP A; 
#chains in the Genus database with same CATH homology
 3O1K A;  4DU6 A;  3BP1 A;  1GTP A;  1N3R A;  1WUR A;  2CG8 A;  4FGC A;  1RSD A;  1RSI A;  3V9O A;  1WPL A;  4GHM A;  1RRW A;  2NM2 A;  1NBU A;  1IS7 A;  1WUQ A;  4IQI A;  1FB1 A;  1FBX A;  1RRY A;  1RS4 A;  5FAR A;  1NBU C;  4UQF A;  1NBU B;  3R2E A;  1Z9W A;  3S19 A;  1B9L A;  1WM9 A;  2O90 A;  4F8B A;  1N3T A;  1RRI A;  3UXJ A;  2DHN A;  1RS2 A;  3RJ4 A;  4AEY A;  1A8R A;  1DHN A;  1U68 A;  3UXV A;  1A9C A;  1SQL A;  1IS8 A;  5F3M A;  1N3S A;  2NM3 A;  3RZP A; 
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similar chains in the pdb database (?% sequence similarity)

 
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