2NRQA

Crystal structure of protein sso0741 from sulfolobus solfataricus, pfam duf54
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
141
structure length
137
Chain Sequence
NQAIISVFIHETEDYNKIVNTIESFFSPLISNSKKNVTTAQGHYGNKIIILEYRFDRKSGEQFFKIILEKIETSELMLILTTSHIDGSKLYLRFDKQYLIAEHRLVLKEGDDVIKCIISFNTSNIKEEIKKLVNSRI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Hypothetical protein ORF-c20_032
publication title UPF201 archaeal specific family members reveal structural similarity to RNA-binding proteins but low likelihood for RNA-binding function.
pubmed doi rcsb
source organism Sulfolobus solfataricus
total genus 36
structure length 137
sequence length 141
ec nomenclature
pdb deposition date 2006-11-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01877 RNA_binding RNA binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1440.10 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5; Chain: A, 50s Ribosomal Protein L5; Chain: A, 2nrqA00
3CCSD 1NJIF 4WCED 1YIJD 2OGKA 1Q81F 5H1SH 1VQ5D 1JJ2D 3G71D 1VQ4D 3J7ZF 2NRQA 1K8AF 1S72D 3PIPD 4UY8F 4IO9D 2QA4D 5GAGF 1YI2D 1KQSD 3CC4D 1N8RF 3CMAD 1M90F 1YJ9D 1VQKD 3CCUD 3I56D 1QVFD 1QVGD 3CC2D 1M1KF 1IQ4A 1KD1F 3CD6D 1VQPD 2OTJD 3C9GA 5JVGD 5HL7D 4WFND 3CCJD 1VQMD 3DLLD 5GAEF 3G4SD 1VQ6D 1Q86F 5JVHD 3CCRD 1YJND 1VQ8D 5DM6D 4WFAD 1VQ9D 5MLCG 3CCVD 1K9MF 4IOAD 2NWUA 1Q82F 3D7AA 3CXCD 3CCLD 1VQOD 1K73F 1VQ7D 4IOCD 3CCQD 4WF9D 5GADF 3CPWD 5GAHF 2ZJRD 1VQND 1YHQD 1W2BD 1KC8F 2ZJQD 3CCED 4WFBD 3CMED 3CC7D 2WNYA 1VQLD 4U67D 3OW2D 2ZJPD 3G6ED 3PIOD 2OTLD 1YITD 1Q7YF 3I55D 2PZZA 3CF5D 2QEXD 1YJWD 5DM7D 3CCMD 1MJIA
chains in the Genus database with same CATH superfamily
3CCSD 1NJIF 4WCED 1YIJD 2OGKA 1Q81F 5H1SH 1VQ5D 1JJ2D 3G71D 1VQ4D 3J7ZF 2NRQA 1K8AF 1S72D 3PIPD 4UY8F 4IO9D 2QA4D 5GAGF 1YI2D 1KQSD 3CC4D 1N8RF 3CMAD 1M90F 1YJ9D 1VQKD 3CCUD 3I56D 1QVFD 1QVGD 3CC2D 1M1KF 1IQ4A 1KD1F 3CD6D 1VQPD 2OTJD 3C9GA 5JVGD 5HL7D 4WFND 3CCJD 1VQMD 3DLLD 5GAEF 3G4SD 1VQ6D 1Q86F 5JVHD 3CCRD 1YJND 1VQ8D 5DM6D 4WFAD 1VQ9D 5MLCG 3CCVD 1K9MF 4IOAD 2NWUA 1Q82F 3D7AA 3CXCD 3CCLD 1VQOD 1K73F 1VQ7D 4IOCD 3CCQD 4WF9D 5GADF 3CPWD 5GAHF 2ZJRD 1VQND 1YHQD 1W2BD 1KC8F 2ZJQD 3CCED 4WFBD 3CMED 3CC7D 2WNYA 1VQLD 4U67D 3OW2D 2ZJPD 3G6ED 3PIOD 2OTLD 1YITD 1Q7YF 3I55D 2PZZA 3CF5D 2QEXD 1YJWD 5DM7D 3CCMD 1MJIA
chains in the Genus database with same CATH topology
3CCSD 1NJIF 4WCED 1YIJD 2OGKA 1Q81F 5H1SH 1VQ5D 1JJ2D 3G71D 1VQ4D 3J7ZF 2NRQA 1K8AF 1S72D 3PIPD 4UY8F 4IO9D 2QA4D 5GAGF 1YI2D 1KQSD 3CC4D 1N8RF 3CMAD 1M90F 1YJ9D 1VQKD 3CCUD 3I56D 1QVFD 1QVGD 3CC2D 1M1KF 1IQ4A 1KD1F 3CD6D 1VQPD 2OTJD 3C9GA 5JVGD 5HL7D 4WFND 3CCJD 1VQMD 3DLLD 5GAEF 3G4SD 1VQ6D 1Q86F 5JVHD 3CCRD 1YJND 1VQ8D 5DM6D 4WFAD 1VQ9D 5MLCG 3CCVD 1K9MF 4IOAD 2NWUA 1Q82F 3D7AA 3CXCD 3CCLD 1VQOD 1K73F 1VQ7D 4IOCD 3CCQD 4WF9D 5GADF 3CPWD 5GAHF 2ZJRD 1VQND 1YHQD 1W2BD 1KC8F 2ZJQD 3CCED 4WFBD 3CMED 3CC7D 2WNYA 1VQLD 4U67D 3OW2D 2ZJPD 3G6ED 3PIOD 2OTLD 1YITD 1Q7YF 3I55D 2PZZA 3CF5D 2QEXD 1YJWD 5DM7D 3CCMD 1MJIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CCS D;  1NJI F;  4WCE D;  1YIJ D;  2OGK A;  1Q81 F;  5H1S H;  1VQ5 D;  1JJ2 D;  3G71 D;  1VQ4 D;  3J7Z F;  2NRQ A;  1K8A F;  1S72 D;  3PIP D;  4UY8 F;  4IO9 D;  2QA4 D;  5GAG F;  1YI2 D;  1KQS D;  3CC4 D;  1N8R F;  3CMA D;  1M90 F;  1YJ9 D;  1VQK D;  3CCU D;  3I56 D;  1QVF D;  1QVG D;  3CC2 D;  1M1K F;  1IQ4 A;  1KD1 F;  3CD6 D;  1VQP D;  2OTJ D;  3C9G A;  5JVG D;  5HL7 D;  4WFN D;  3CCJ D;  1VQM D;  3DLL D;  5GAE F;  3G4S D;  1VQ6 D;  1Q86 F;  5JVH D;  3CCR D;  1YJN D;  1VQ8 D;  5DM6 D;  4WFA D;  1VQ9 D;  5MLC G;  3CCV D;  1K9M F;  4IOA D;  2NWU A;  1Q82 F;  3D7A A;  3CXC D;  3CCL D;  1VQO D;  1K73 F;  1VQ7 D;  4IOC D;  3CCQ D;  4WF9 D;  5GAD F;  3CPW D;  5GAH F;  2ZJR D;  1VQN D;  1YHQ D;  1W2B D;  1KC8 F;  2ZJQ D;  3CCE D;  4WFB D;  3CME D;  3CC7 D;  2WNY A;  1VQL D;  4U67 D;  3OW2 D;  2ZJP D;  3G6E D;  3PIO D;  2OTL D;  1YIT D;  1Q7Y F;  3I55 D;  2PZZ A;  3CF5 D;  2QEX D;  1YJW D;  5DM7 D;  3CCM D;  1MJI A; 
#chains in the Genus database with same CATH topology
 3CCS D;  1NJI F;  4WCE D;  1YIJ D;  2OGK A;  1Q81 F;  5H1S H;  1VQ5 D;  1JJ2 D;  3G71 D;  1VQ4 D;  3J7Z F;  2NRQ A;  1K8A F;  1S72 D;  3PIP D;  4UY8 F;  4IO9 D;  2QA4 D;  5GAG F;  1YI2 D;  1KQS D;  3CC4 D;  1N8R F;  3CMA D;  1M90 F;  1YJ9 D;  1VQK D;  3CCU D;  3I56 D;  1QVF D;  1QVG D;  3CC2 D;  1M1K F;  1IQ4 A;  1KD1 F;  3CD6 D;  1VQP D;  2OTJ D;  3C9G A;  5JVG D;  5HL7 D;  4WFN D;  3CCJ D;  1VQM D;  3DLL D;  5GAE F;  3G4S D;  1VQ6 D;  1Q86 F;  5JVH D;  3CCR D;  1YJN D;  1VQ8 D;  5DM6 D;  4WFA D;  1VQ9 D;  5MLC G;  3CCV D;  1K9M F;  4IOA D;  2NWU A;  1Q82 F;  3D7A A;  3CXC D;  3CCL D;  1VQO D;  1K73 F;  1VQ7 D;  4IOC D;  3CCQ D;  4WF9 D;  5GAD F;  3CPW D;  5GAH F;  2ZJR D;  1VQN D;  1YHQ D;  1W2B D;  1KC8 F;  2ZJQ D;  3CCE D;  4WFB D;  3CME D;  3CC7 D;  2WNY A;  1VQL D;  4U67 D;  3OW2 D;  2ZJP D;  3G6E D;  3PIO D;  2OTL D;  1YIT D;  1Q7Y F;  3I55 D;  2PZZ A;  3CF5 D;  2QEX D;  1YJW D;  5DM7 D;  3CCM D;  1MJI A; 
#chains in the Genus database with same CATH homology
 3CCS D;  1NJI F;  4WCE D;  1YIJ D;  2OGK A;  1Q81 F;  5H1S H;  1VQ5 D;  1JJ2 D;  3G71 D;  1VQ4 D;  3J7Z F;  2NRQ A;  1K8A F;  1S72 D;  3PIP D;  4UY8 F;  4IO9 D;  2QA4 D;  5GAG F;  1YI2 D;  1KQS D;  3CC4 D;  1N8R F;  3CMA D;  1M90 F;  1YJ9 D;  1VQK D;  3CCU D;  3I56 D;  1QVF D;  1QVG D;  3CC2 D;  1M1K F;  1IQ4 A;  1KD1 F;  3CD6 D;  1VQP D;  2OTJ D;  3C9G A;  5JVG D;  5HL7 D;  4WFN D;  3CCJ D;  1VQM D;  3DLL D;  5GAE F;  3G4S D;  1VQ6 D;  1Q86 F;  5JVH D;  3CCR D;  1YJN D;  1VQ8 D;  5DM6 D;  4WFA D;  1VQ9 D;  5MLC G;  3CCV D;  1K9M F;  4IOA D;  2NWU A;  1Q82 F;  3D7A A;  3CXC D;  3CCL D;  1VQO D;  1K73 F;  1VQ7 D;  4IOC D;  3CCQ D;  4WF9 D;  5GAD F;  3CPW D;  5GAH F;  2ZJR D;  1VQN D;  1YHQ D;  1W2B D;  1KC8 F;  2ZJQ D;  3CCE D;  4WFB D;  3CME D;  3CC7 D;  2WNY A;  1VQL D;  4U67 D;  3OW2 D;  2ZJP D;  3G6E D;  3PIO D;  2OTL D;  1YIT D;  1Q7Y F;  3I55 D;  2PZZ A;  3CF5 D;  2QEX D;  1YJW D;  5DM7 D;  3CCM D;  1MJI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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