2NU2I

Accommodation of positively-charged residues in a hydrophobic specificity pocket: crystal structures of sgpb in complex with omtky3 variants lys18i and arg18i
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
51
structure length
51
Chain Sequence
VDCSEYPKPACTREYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Meleagris gallopavo
publication title Accommodation of positively-charged residues in a hydrophobic specificity pocket: Crystal structures of SGPB in complex with OMTKY3 variants Lys18I and Arg18I
rcsb
molecule keywords Streptogrisin B, Protease B
total genus 14
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 2006-11-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2nu2I00
2JYYA 1M8BA 1UVGA 3SGBI 1CT2I 1PPFI 1LR7A 1H0ZA 1LR9A 2B0UC 2LEOA 1UUCA 1YU6C 1KMAA 1HJAI 1OMUA 2KCXA 1N13A 2GKVA 2WCYA 1M8CA 1SGPI 1TURA 1SGQI 2NU0I 1TIHA 2SGFI 2QQCA 2ARPF 4OVOA 3TJQA 2SGPI 1MT1A 2N52A 1HDLA 1CSOI 2XRCA 1CGJI 2NU3I 1SGEI 1PCEA 5JHWC 1TBQR 1UVFA 2KMPA 1BUSA 2NU2I 1BMOA 1HPTA 1TGSI 1SGDI 2V53A 2GKTI 2NU4I 1FYBA 1TUSA 1SGRI 3SGQI 1CHOI 1IY6A 2N17A 1AN1I 2KMQA 2SGQI 2F3CI 2KMRA 2BUSA 2JZMA 1OMTA 1IW4A 1CT0I 3QTLD 4GI3C 2GKRI 1PJUA 2NU1I 1SGYI 2M5XA 1SGNI 1LR8A 1Y1CA 4HGUA 1NUBA 1CE3A 1TBRR 1CGII 2JXDA 2SGDI 3SEKC 1OYVI 3HH2C 1Y1BA 3OVOA 2KMOA 4SGBI 2OVOA 2N71A 2SGEI 1OVOA 1CT4I 3B4VC 1YTPA 1IY5A 2P6AC 1DS3I 5DAEA 2ERWA 1DS2I 1R0RI 1Z7KB 2QQDA
chains in the Genus database with same CATH superfamily
2JYYA 1M8BA 1UVGA 2J87A 3RU0A 1PTRA 3SGBI 2YUUA 2ENNA 1CT2I 3OL0A 7WGAA 2GVIA 1PPFI 2RC4A 1LR7A 1H0ZA 2L8EA 1LR9A 2B0UC 2LEOA 2B8TA 1UUCA 1YU6C 1KMAA 1HJAI 1OMUA 2KCXA 5FUYA 4A24A 2V1CC 1TBNA 3UGLA 1WGCA 1X4SA 1N13A 2GKVA 2OU2A 2WCYA 1M8CA 1FARA 1SGPI 1TURA 1WGTA 5HI7A 5EX3A 3UGIA 2LUYA 2PQ8A 1SGQI 2NU0I 1RFHA 3VDUA 5J8CA 1TIHA 1Y8FA 2SGFI 2JW6A 2QQCA 3TOAA 3VE5A 2ARPF 2N1AB 3TOBA 3OXGA 4OVOA 5FUVA 3QWPA 1V1IA 3TJQA 3PDNA 2SGPI 2ORVA 3R5BA 1MT1A 2CJSC 3R5DA 4WP4A 2N52A 1U5KA 4MPIA 1HDLA 3FSXA 1CSOI 1P9GA 2OD1A 2XRCA 5CCMA 5HQ8A 2ENZA 1X74A 2RIJA 1CGJI 2NU3I 2ELIA 1SGEI 1PCEA 5J8FA 5JHWC 5EX0A 5CCLA 1XX6A 3E2IA 1HEVA 1TBQR 4AMLA 5FUXA 1UVFA 2KMPA 1BUSA 2NU2I 1PTQA 2LB7A 2L7XA 1K7TA 1BMOA 4E1PA 1HPTA 1TGSI 1SGDI 2ROWA 3D00A 2V53A 2JA1A 2YQPA 4DNCA 2GKTI 2NU4I 2X3TA 1TBOA 4E1RA 1FYBA 1TUSA 1W3SA 5E3RA 2V1CA 3UOEA 1SGRI 3UFFA 2DIPA 3SGQI 4B6DA 1UHAA 2X52A 1CHOI 1W4RA 2QQ0A 2Y0MA 1NXUA 1Q9BA 1XBTA 2A20A 2QPOA 1IY6A 2N17A 1S20A 1K7VA 1TOTA 1AN1I 2KMQA 1Z2IA 2SGQI 2CWHA 4L9MA 2QQEA 3VDPA 3FC3A 3QAHA 3R5AA 1ULKA 3R5CA 2F3CI 2KMRA 3KY9A 3CXLA 2BUSA 2E5RA 2JZMA 1OMTA 1IW4A 1K7UA 2FNFX 3OXLA 1CT0I 3QTLD 4GI3C 2GKRI 5E3QA 2WGCA 4UXJA 1PJUA 2NU1I 2ODDA 1SGYI 2M5XA 1MJAA 1SGNI 1WKXA 1LR8A 1VDDA 1Y1CA 3MEKA 4HGUA 3UEJA 2ORWA 1P9ZA 1NUBA 2DKVA 5E3PA 1CE3A 1TBRR 1MJBA 9WGAA 1CGII 2JXDA 2SGDI 1ULMA 3SEKC 1OYVI 3FSYA 1V1HA 4JCVE 3BJIA 3HH2C 3OXFA 2OZUA 1Y1BA 3TO9A 3OVOA 2KMOA 2WVJA 1KBFA 4SGBI 2OVOA 2DB6A 2N71A 1OVOA 1CT4I 1XA6A 2SGEI 2E73A 4UXIA 1ULNA 3B4VC 3GOXA 2CWFA 3TO6A 1WTJA 3UGDA 3TO7A 3UEYA 2VRWB 1R79A 1YTPA 2UVOA 2GIVA 1MJ9A 2CWGA 1IY5A 2J9RA 2UZ3A 3E59A 4FKDA 1KBEA 1FAQA 2P6AC 1DS3I 5DAEA 4UXHA 1FY7A 2K9HA 2ERWA 1DS2I 1R0RI 1Z7KB 5FUWA 2W0TA 2QQDA
chains in the Genus database with same CATH topology
2JYYA 1M8BA 1UVGA 2J87A 3RU0A 1PTRA 3SGBI 2YUUA 2ENNA 1CT2I 3OL0A 2GVIA 1PPFI 1LR7A 1H0ZA 2L8EA 1LR9A 2B0UC 2LEOA 2B8TA 1UUCA 1YU6C 1KMAA 1HJAI 1OMUA 2KCXA 5FUYA 4A24A 2V1CC 1TBNA 3UGLA 1X4SA 1N13A 2GKVA 2WCYA 1M8CA 1FARA 1SGPI 1TURA 5HI7A 5EX3A 3UGIA 2LUYA 1SGQI 2NU0I 1RFHA 3VDUA 1TIHA 1Y8FA 2SGFI 2JW6A 2QQCA 3VE5A 2ARPF 2N1AB 3OXGA 4OVOA 5FUVA 3QWPA 1V1IA 3TJQA 3PDNA 2SGPI 2ORVA 1MT1A 2CJSC 2N52A 1U5KA 1HDLA 1CSOI 2OD1A 2XRCA 5CCMA 5HQ8A 2ENZA 1X74A 1CGJI 2NU3I 2ELIA 1SGEI 1PCEA 5JHWC 5EX0A 5CCLA 1XX6A 3E2IA 1TBQR 5FUXA 1UVFA 2KMPA 1BUSA 2NU2I 1PTQA 2L7XA 4E1PA 1BMOA 1HPTA 1TGSI 1SGDI 2ROWA 3D00A 2V53A 2JA1A 2YQPA 2GKTI 2NU4I 1TBOA 4E1RA 1FYBA 1TUSA 1W3SA 2V1CA 1SGRI 3UFFA 2DIPA 3SGQI 4B6DA 1CHOI 1W4RA 2QQ0A 1XBTA 2QPOA 2A20A 1IY6A 2N17A 1TOTA 1AN1I 2KMQA 2SGQI 4L9MA 2QQEA 3VDPA 3FC3A 2F3CI 2KMRA 3KY9A 3CXLA 2BUSA 2E5RA 2JZMA 1OMTA 1IW4A 2FNFX 3OXLA 1CT0I 3QTLD 4GI3C 2GKRI 4UXJA 1PJUA 2NU1I 2ODDA 1SGYI 2M5XA 3MEKA 1SGNI 1LR8A 1VDDA 1Y1CA 4HGUA 3UEJA 2ORWA 1NUBA 1CE3A 1TBRR 1CGII 2JXDA 2SGDI 3SEKC 1OYVI 1V1HA 4JCVE 3BJIA 3HH2C 3OXFA 1Y1BA 3OVOA 2KMOA 2WVJA 1KBFA 4SGBI 2OVOA 2DB6A 2N71A 1OVOA 1CT4I 1XA6A 2SGEI 2E73A 4UXIA 3B4VC 3GOXA 3UGDA 3UEYA 2VRWB 1R79A 1YTPA 1IY5A 2J9RA 2UZ3A 3E59A 4FKDA 1KBEA 1FAQA 2P6AC 1DS3I 5DAEA 4UXHA 2K9HA 2ERWA 1DS2I 1R0RI 1Z7KB 5FUWA 2W0TA 2QQDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JYY A;  1M8B A;  1UVG A;  3SGB I;  1CT2 I;  1PPF I;  1LR7 A;  1H0Z A;  1LR9 A;  2B0U C;  2LEO A;  1UUC A;  1YU6 C;  1KMA A;  1HJA I;  1OMU A;  2KCX A;  1N13 A;  2GKV A;  2WCY A;  1M8C A;  1SGP I;  1TUR A;  1SGQ I;  2NU0 I;  1TIH A;  2SGF I;  2QQC A;  2ARP F;  4OVO A;  3TJQ A;  2SGP I;  1MT1 A;  2N52 A;  1HDL A;  1CSO I;  2XRC A;  1CGJ I;  2NU3 I;  1SGE I;  1PCE A;  5JHW C;  1TBQ R;  1UVF A;  2KMP A;  1BUS A;  2NU2 I;  1BMO A;  1HPT A;  1TGS I;  1SGD I;  2V53 A;  2GKT I;  2NU4 I;  1FYB A;  1TUS A;  1SGR I;  3SGQ I;  1CHO I;  1IY6 A;  2N17 A;  1AN1 I;  2KMQ A;  2SGQ I;  2F3C I;  2KMR A;  2BUS A;  2JZM A;  1OMT A;  1IW4 A;  1CT0 I;  3QTL D;  4GI3 C;  2GKR I;  1PJU A;  2NU1 I;  1SGY I;  2M5X A;  1SGN I;  1LR8 A;  1Y1C A;  4HGU A;  1NUB A;  1CE3 A;  1TBR R;  1CGI I;  2JXD A;  2SGD I;  3SEK C;  1OYV I;  3HH2 C;  1Y1B A;  3OVO A;  2KMO A;  4SGB I;  2OVO A;  2N71 A;  2SGE I;  1OVO A;  1CT4 I;  3B4V C;  1YTP A;  1IY5 A;  2P6A C;  1DS3 I;  5DAE A;  2ERW A;  1DS2 I;  1R0R I;  1Z7K B;  2QQD A; 
#chains in the Genus database with same CATH topology
 2JYY A;  1M8B A;  1UVG A;  2J87 A;  3RU0 A;  1PTR A;  3SGB I;  2YUU A;  2ENN A;  1CT2 I;  3OL0 A;  7WGA A;  2GVI A;  1PPF I;  2RC4 A;  1LR7 A;  1H0Z A;  2L8E A;  1LR9 A;  2B0U C;  2LEO A;  2B8T A;  1UUC A;  1YU6 C;  1KMA A;  1HJA I;  1OMU A;  2KCX A;  5FUY A;  4A24 A;  2V1C C;  1TBN A;  3UGL A;  1WGC A;  1X4S A;  1N13 A;  2GKV A;  2OU2 A;  2WCY A;  1M8C A;  1FAR A;  1SGP I;  1TUR A;  1WGT A;  5HI7 A;  5EX3 A;  3UGI A;  2LUY A;  2PQ8 A;  1SGQ I;  2NU0 I;  1RFH A;  3VDU A;  5J8C A;  1TIH A;  1Y8F A;  2SGF I;  2JW6 A;  2QQC A;  3TOA A;  3VE5 A;  2ARP F;  2N1A B;  3TOB A;  3OXG A;  4OVO A;  5FUV A;  3QWP A;  1V1I A;  3TJQ A;  3PDN A;  2SGP I;  2ORV A;  3R5B A;  1MT1 A;  2CJS C;  3R5D A;  4WP4 A;  2N52 A;  1U5K A;  4MPI A;  1HDL A;  3FSX A;  1CSO I;  1P9G A;  2OD1 A;  2XRC A;  5CCM A;  5HQ8 A;  2ENZ A;  1X74 A;  2RIJ A;  1CGJ I;  2NU3 I;  2ELI A;  1SGE I;  1PCE A;  5J8F A;  5JHW C;  5EX0 A;  5CCL A;  1XX6 A;  3E2I A;  1HEV A;  1TBQ R;  4AML A;  5FUX A;  1UVF A;  2KMP A;  1BUS A;  2NU2 I;  1PTQ A;  2LB7 A;  2L7X A;  1K7T A;  1BMO A;  4E1P A;  1HPT A;  1TGS I;  1SGD I;  2ROW A;  3D00 A;  2V53 A;  2JA1 A;  2YQP A;  4DNC A;  2GKT I;  2NU4 I;  2X3T A;  1TBO A;  4E1R A;  1FYB A;  1TUS A;  1W3S A;  5E3R A;  2V1C A;  3UOE A;  1SGR I;  3UFF A;  2DIP A;  3SGQ I;  4B6D A;  1UHA A;  2X52 A;  1CHO I;  1W4R A;  2QQ0 A;  2Y0M A;  1NXU A;  1Q9B A;  1XBT A;  2A20 A;  2QPO A;  1IY6 A;  2N17 A;  1S20 A;  1K7V A;  1TOT A;  1AN1 I;  2KMQ A;  1Z2I A;  2SGQ I;  2CWH A;  4L9M A;  2QQE A;  3VDP A;  3FC3 A;  3QAH A;  3R5A A;  1ULK A;  3R5C A;  2F3C I;  2KMR A;  3KY9 A;  3CXL A;  2BUS A;  2E5R A;  2JZM A;  1OMT A;  1IW4 A;  1K7U A;  2FNF X;  3OXL A;  1CT0 I;  3QTL D;  4GI3 C;  2GKR I;  5E3Q A;  2WGC A;  4UXJ A;  1PJU A;  2NU1 I;  2ODD A;  1SGY I;  2M5X A;  1MJA A;  1SGN I;  1WKX A;  1LR8 A;  1VDD A;  1Y1C A;  3MEK A;  4HGU A;  3UEJ A;  2ORW A;  1P9Z A;  1NUB A;  2DKV A;  5E3P A;  1CE3 A;  1TBR R;  1MJB A;  9WGA A;  1CGI I;  2JXD A;  2SGD I;  1ULM A;  3SEK C;  1OYV I;  3FSY A;  1V1H A;  4JCV E;  3BJI A;  3HH2 C;  3OXF A;  2OZU A;  1Y1B A;  3TO9 A;  3OVO A;  2KMO A;  2WVJ A;  1KBF A;  4SGB I;  2OVO A;  2DB6 A;  2N71 A;  1OVO A;  1CT4 I;  1XA6 A;  2SGE I;  2E73 A;  4UXI A;  1ULN A;  3B4V C;  3GOX A;  2CWF A;  3TO6 A;  1WTJ A;  3UGD A;  3TO7 A;  3UEY A;  2VRW B;  1R79 A;  1YTP A;  2UVO A;  2GIV A;  1MJ9 A;  2CWG A;  1IY5 A;  2J9R A;  2UZ3 A;  3E59 A;  4FKD A;  1KBE A;  1FAQ A;  2P6A C;  1DS3 I;  5DAE A;  4UXH A;  1FY7 A;  2K9H A;  2ERW A;  1DS2 I;  1R0R I;  1Z7K B;  5FUW A;  2W0T A;  2QQD A; 
#chains in the Genus database with same CATH homology
 2JYY A;  1M8B A;  1UVG A;  2J87 A;  3RU0 A;  1PTR A;  3SGB I;  2YUU A;  2ENN A;  1CT2 I;  3OL0 A;  2GVI A;  1PPF I;  1LR7 A;  1H0Z A;  2L8E A;  1LR9 A;  2B0U C;  2LEO A;  2B8T A;  1UUC A;  1YU6 C;  1KMA A;  1HJA I;  1OMU A;  2KCX A;  5FUY A;  4A24 A;  2V1C C;  1TBN A;  3UGL A;  1X4S A;  1N13 A;  2GKV A;  2WCY A;  1M8C A;  1FAR A;  1SGP I;  1TUR A;  5HI7 A;  5EX3 A;  3UGI A;  2LUY A;  1SGQ I;  2NU0 I;  1RFH A;  3VDU A;  1TIH A;  1Y8F A;  2SGF I;  2JW6 A;  2QQC A;  3VE5 A;  2ARP F;  2N1A B;  3OXG A;  4OVO A;  5FUV A;  3QWP A;  1V1I A;  3TJQ A;  3PDN A;  2SGP I;  2ORV A;  1MT1 A;  2CJS C;  2N52 A;  1U5K A;  1HDL A;  1CSO I;  2OD1 A;  2XRC A;  5CCM A;  5HQ8 A;  2ENZ A;  1X74 A;  1CGJ I;  2NU3 I;  2ELI A;  1SGE I;  1PCE A;  5JHW C;  5EX0 A;  5CCL A;  1XX6 A;  3E2I A;  1TBQ R;  5FUX A;  1UVF A;  2KMP A;  1BUS A;  2NU2 I;  1PTQ A;  2L7X A;  4E1P A;  1BMO A;  1HPT A;  1TGS I;  1SGD I;  2ROW A;  3D00 A;  2V53 A;  2JA1 A;  2YQP A;  2GKT I;  2NU4 I;  1TBO A;  4E1R A;  1FYB A;  1TUS A;  1W3S A;  2V1C A;  1SGR I;  3UFF A;  2DIP A;  3SGQ I;  4B6D A;  1CHO I;  1W4R A;  2QQ0 A;  1XBT A;  2QPO A;  2A20 A;  1IY6 A;  2N17 A;  1TOT A;  1AN1 I;  2KMQ A;  2SGQ I;  4L9M A;  2QQE A;  3VDP A;  3FC3 A;  2F3C I;  2KMR A;  3KY9 A;  3CXL A;  2BUS A;  2E5R A;  2JZM A;  1OMT A;  1IW4 A;  2FNF X;  3OXL A;  1CT0 I;  3QTL D;  4GI3 C;  2GKR I;  4UXJ A;  1PJU A;  2NU1 I;  2ODD A;  1SGY I;  2M5X A;  3MEK A;  1SGN I;  1LR8 A;  1VDD A;  1Y1C A;  4HGU A;  3UEJ A;  2ORW A;  1NUB A;  1CE3 A;  1TBR R;  1CGI I;  2JXD A;  2SGD I;  3SEK C;  1OYV I;  1V1H A;  4JCV E;  3BJI A;  3HH2 C;  3OXF A;  1Y1B A;  3OVO A;  2KMO A;  2WVJ A;  1KBF A;  4SGB I;  2OVO A;  2DB6 A;  2N71 A;  1OVO A;  1CT4 I;  1XA6 A;  2SGE I;  2E73 A;  4UXI A;  3B4V C;  3GOX A;  3UGD A;  3UEY A;  2VRW B;  1R79 A;  1YTP A;  1IY5 A;  2J9R A;  2UZ3 A;  3E59 A;  4FKD A;  1KBE A;  1FAQ A;  2P6A C;  1DS3 I;  5DAE A;  4UXH A;  2K9H A;  2ERW A;  1DS2 I;  1R0R I;  1Z7K B;  5FUW A;  2W0T A;  2QQD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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