2NU2I

Accommodation of positively-charged residues in a hydrophobic specificity pocket: crystal structures of sgpb in complex with omtky3 variants lys18i and arg18i
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
51
structure length
51
Chain Sequence
VDCSEYPKPACTREYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Streptogrisin B, Protease B
publication title Accommodation of positively-charged residues in a hydrophobic specificity pocket: Crystal structures of SGPB in complex with OMTKY3 variants Lys18I and Arg18I
rcsb
source organism Meleagris gallopavo
molecule tags Hydrolase
total genus 14
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 2006-11-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2nu2I00
2KMPA 2WCYA 1M8BA 2SGFI 1SGYI 2SGEI 2ARPF 4SGBI 1N13A 1CT0I 3B4VC 2N52A 2QQDA 1PPFI 1CT4I 1PJUA 2XRCA 1Y1CA 2GKRI 1BUSA 2B0UC 1KMAA 1NUBA 1UVGA 2OVOA 2NU4I 1LR8A 2N71A 2QQCA 1TURA 1YTPA 1OYVI 1DS2I 1SGDI 2BUSA 3HH2C 2SGQI 2SGPI 2ERWA 1UVFA 1OMTA 1OMUA 1SGPI 2N17A 1OVOA 1HPTA 2JYYA 1CGII 1YU6C 4HGUA 1MT1A 2JXDA 1SGRI 1HDLA 2GKVA 1CE3A 3QTLD 1SGNI 2NU0I 3TJQA 1LR7A 1AN1I 2KMOA 2LEOA 1IY6A 1M8CA 1R0RI 1TIHA 2GKTI 1Y1BA 1CSOI 2KCXA 1TGSI 3SEKC 1BMOA 2M5XA 2JZMA 1CHOI 1TBRR 1SGQI 2SGDI 1TBQR 1LR9A 2F3CI 1CT2I 1IW4A 4OVOA 1IY5A 2KMRA 2P6AC 1TUSA 1FYBA 2V53A 5DAEA 3OVOA 3SGBI 3SGQI 1DS3I 4GI3C 1H0ZA 1HJAI 1PCEA 1CGJI 1SGEI 2NU1I 2KMQA 5JHWC 2NU3I 1UUCA 1Z7KB 2NU2I
chains in the Genus database with same CATH superfamily
2KMPA 2X3TA 1MJAA 3QAHA 2WCYA 2J87A 1M8BA 5FUVA 2Y0MA 2K9HA 2ENZA 5FUWA 2SGFI 1SGYI 2YUUA 2ORWA 3TO7A 2SGEI 3MEKA 2ARPF 3FSYA 4SGBI 1N13A 2QQEA 1CT0I 1W3SA 3B4VC 2N52A 2GIVA 2QQDA 5EX3A 1PPFI 1ULNA 5EX0A 2V1CC 1CT4I 1PJUA 4AMLA 1TBNA 2CWHA 2XRCA 3R5CA 2E5RA 2VRWB 1Y1CA 2GKRI 2OU2A 1XX6A 3R5AA 1BUSA 2RIJA 2B0UC 1FAQA 1KMAA 1NUBA 4MPIA 1HEVA 3UEYA 3E59A 3UGDA 1UVGA 2OVOA 2A20A 2B8TA 2DB6A 2PQ8A 3QWPA 2WVJA 3E2IA 1XA6A 2NU4I 1LR8A 3R5DA 2N71A 3RU0A 2CJSC 2QQCA 3VDPA 1TURA 1RFHA 2E73A 1V1IA 1XBTA 4E1RA 1YTPA 1OYVI 1DS2I 1WTJA 1SGDI 2BUSA 1KBEA 2N1AB 3HH2C 3TOAA 2SGQI 5HQ8A 5J8FA 2SGPI 2ERWA 1UVFA 2UZ3A 3OXGA 4DNCA 1OMTA 1MJ9A 1OMUA 3OXFA 2OZUA 2X52A 1W4RA 5E3PA 4E1PA 1PTQA 3FC3A 1K7TA 1SGPI 2GVIA 5HI7A 2N17A 1OVOA 1HPTA 2JYYA 3CXLA 1CGII 2L8EA 1YU6C 4HGUA 2DKVA 3KY9A 1MT1A 2JXDA 1SGRI 1HDLA 2ORVA 5CCMA 2ENNA 5FUYA 1Y8FA 2GKVA 1CE3A 1NXUA 1SGNI 3QTLD 3VE5A 2NU0I 3TJQA 2CWFA 1FY7A 1LR7A 3VDUA 1WKXA 1AN1I 1WGTA 5E3RA 4UXHA 3TOBA 5CCLA 5J8CA 2ELIA 2KMOA 2LEOA 3TO9A 3GOXA 3UGLA 1M8CA 1IY6A 1R0RI 1TBOA 1TIHA 2GKTI 1Y1BA 3UEJA 1P9GA 1K7VA 1K7UA 1CSOI 1FARA 1TGSI 2CWGA 2JW6A 2KCXA 2WGCA 1MJBA 3OXLA 4WP4A 2YQPA 3SEKC 1BMOA 2M5XA 2UVOA 2JZMA 2W0TA 3UOEA 1CHOI 1ULMA 1TBRR 1SGQI 2SGDI 3TO6A 1TBQR 1LR9A 2F3CI 1KBFA 2LB7A 1CT2I 2RC4A 2QPOA 1X74A 1IW4A 4OVOA 2J9RA 1U5KA 1TOTA 1V1HA 2KMRA 2V1CA 3PDNA 5FUXA 1IY5A 2JA1A 3R5BA 2P6AC 4A24A 1TUSA 2LUYA 2ODDA 1FYBA 3OL0A 1ULKA 2QQ0A 2V53A 1PTRA 1WGCA 1X4SA 5DAEA 3OVOA 4FKDA 1S20A 3SGBI 1UHAA 2ROWA 5E3QA 3SGQI 1DS3I 1P9ZA 3D00A 4GI3C 3BJIA 1Z2IA 3UGIA 1HJAI 4JCVE 1PCEA 4UXIA 9WGAA 3UFFA 1H0ZA 1CGJI 7WGAA 1SGEI 2NU1I 2L7XA 3FSXA 4UXJA 4B6DA 2KMQA 5JHWC 1UUCA 2NU3I 2FNFX 1Z7KB 2DIPA 4L9MA 1R79A 2OD1A 1VDDA 2NU2I 1Q9BA
chains in the Genus database with same CATH topology
2KMPA 2WCYA 2J87A 1M8BA 5FUVA 2K9HA 2ENZA 5FUWA 2SGFI 1SGYI 2YUUA 2ORWA 2SGEI 3MEKA 2ARPF 4SGBI 1N13A 2QQEA 1CT0I 1W3SA 3B4VC 2N52A 2QQDA 5EX3A 1PPFI 5EX0A 2V1CC 1CT4I 1PJUA 1TBNA 2XRCA 2E5RA 2VRWB 1Y1CA 2GKRI 1XX6A 1BUSA 2B0UC 1FAQA 1KMAA 1NUBA 3UEYA 3E59A 3UGDA 1UVGA 2OVOA 2B8TA 2A20A 2DB6A 3QWPA 2WVJA 3E2IA 1XA6A 2NU4I 1LR8A 2N71A 3RU0A 2CJSC 2QQCA 3VDPA 1TURA 1RFHA 2E73A 1V1IA 1XBTA 4E1RA 1YTPA 1OYVI 1DS2I 1SGDI 2BUSA 1KBEA 2N1AB 3HH2C 5HQ8A 2SGQI 2SGPI 2ERWA 1UVFA 2UZ3A 3OXGA 1OMTA 1OMUA 3OXFA 1W4RA 4E1PA 1PTQA 3FC3A 1SGPI 2GVIA 5HI7A 2N17A 1OVOA 1HPTA 2JYYA 3CXLA 1CGII 2L8EA 1YU6C 4HGUA 3KY9A 1MT1A 2JXDA 1SGRI 1HDLA 2ORVA 5CCMA 2ENNA 5FUYA 1Y8FA 2GKVA 1CE3A 3QTLD 1SGNI 3VE5A 2NU0I 3TJQA 1LR7A 3VDUA 1AN1I 4UXHA 5CCLA 2ELIA 2KMOA 2LEOA 3GOXA 3UGLA 1M8CA 1IY6A 1R0RI 1TBOA 1TIHA 2GKTI 1Y1BA 3UEJA 1CSOI 1FARA 1TGSI 2JW6A 2KCXA 3OXLA 2YQPA 3SEKC 1BMOA 2M5XA 2W0TA 2JZMA 1CHOI 1TBRR 1SGQI 2SGDI 1TBQR 1LR9A 2F3CI 1KBFA 1CT2I 2QPOA 1X74A 1IW4A 4OVOA 2J9RA 1U5KA 1TOTA 1V1HA 2KMRA 2V1CA 3PDNA 5FUXA 1IY5A 2JA1A 2P6AC 4A24A 1TUSA 2LUYA 2ODDA 1FYBA 3OL0A 2QQ0A 2V53A 1PTRA 1X4SA 5DAEA 3OVOA 4FKDA 3SGBI 2ROWA 3SGQI 1DS3I 3D00A 4GI3C 3BJIA 3UGIA 1H0ZA 1HJAI 4JCVE 1PCEA 4UXIA 3UFFA 1CGJI 1SGEI 2NU1I 2L7XA 4UXJA 4B6DA 2KMQA 5JHWC 1UUCA 2NU3I 2FNFX 1Z7KB 2DIPA 4L9MA 1R79A 2OD1A 1VDDA 2NU2I
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KMP A;  2WCY A;  1M8B A;  2SGF I;  1SGY I;  2SGE I;  2ARP F;  4SGB I;  1N13 A;  1CT0 I;  3B4V C;  2N52 A;  2QQD A;  1PPF I;  1CT4 I;  1PJU A;  2XRC A;  1Y1C A;  2GKR I;  1BUS A;  2B0U C;  1KMA A;  1NUB A;  1UVG A;  2OVO A;  2NU4 I;  1LR8 A;  2N71 A;  2QQC A;  1TUR A;  1YTP A;  1OYV I;  1DS2 I;  1SGD I;  2BUS A;  3HH2 C;  2SGQ I;  2SGP I;  2ERW A;  1UVF A;  1OMT A;  1OMU A;  1SGP I;  2N17 A;  1OVO A;  1HPT A;  2JYY A;  1CGI I;  1YU6 C;  4HGU A;  1MT1 A;  2JXD A;  1SGR I;  1HDL A;  2GKV A;  1CE3 A;  3QTL D;  1SGN I;  2NU0 I;  3TJQ A;  1LR7 A;  1AN1 I;  2KMO A;  2LEO A;  1IY6 A;  1M8C A;  1R0R I;  1TIH A;  2GKT I;  1Y1B A;  1CSO I;  2KCX A;  1TGS I;  3SEK C;  1BMO A;  2M5X A;  2JZM A;  1CHO I;  1TBR R;  1SGQ I;  2SGD I;  1TBQ R;  1LR9 A;  2F3C I;  1CT2 I;  1IW4 A;  4OVO A;  1IY5 A;  2KMR A;  2P6A C;  1TUS A;  1FYB A;  2V53 A;  5DAE A;  3OVO A;  3SGB I;  3SGQ I;  1DS3 I;  4GI3 C;  1H0Z A;  1HJA I;  1PCE A;  1CGJ I;  1SGE I;  2NU1 I;  2KMQ A;  5JHW C;  2NU3 I;  1UUC A;  1Z7K B;  2NU2 I; 
#chains in the Genus database with same CATH topology
 2KMP A;  2X3T A;  1MJA A;  3QAH A;  2WCY A;  2J87 A;  1M8B A;  5FUV A;  2Y0M A;  2K9H A;  2ENZ A;  5FUW A;  2SGF I;  1SGY I;  2YUU A;  2ORW A;  3TO7 A;  2SGE I;  3MEK A;  2ARP F;  3FSY A;  4SGB I;  1N13 A;  2QQE A;  1CT0 I;  1W3S A;  3B4V C;  2N52 A;  2GIV A;  2QQD A;  5EX3 A;  1PPF I;  1ULN A;  5EX0 A;  2V1C C;  1CT4 I;  1PJU A;  4AML A;  1TBN A;  2CWH A;  2XRC A;  3R5C A;  2E5R A;  2VRW B;  1Y1C A;  2GKR I;  2OU2 A;  1XX6 A;  3R5A A;  1BUS A;  2RIJ A;  2B0U C;  1FAQ A;  1KMA A;  1NUB A;  4MPI A;  1HEV A;  3UEY A;  3E59 A;  3UGD A;  1UVG A;  2OVO A;  2A20 A;  2B8T A;  2DB6 A;  2PQ8 A;  3QWP A;  2WVJ A;  3E2I A;  1XA6 A;  2NU4 I;  1LR8 A;  3R5D A;  2N71 A;  3RU0 A;  2CJS C;  2QQC A;  3VDP A;  1TUR A;  1RFH A;  2E73 A;  1V1I A;  1XBT A;  4E1R A;  1YTP A;  1OYV I;  1DS2 I;  1WTJ A;  1SGD I;  2BUS A;  1KBE A;  2N1A B;  3HH2 C;  3TOA A;  2SGQ I;  5HQ8 A;  5J8F A;  2SGP I;  2ERW A;  1UVF A;  2UZ3 A;  3OXG A;  4DNC A;  1OMT A;  1MJ9 A;  1OMU A;  3OXF A;  2OZU A;  2X52 A;  1W4R A;  5E3P A;  4E1P A;  1PTQ A;  3FC3 A;  1K7T A;  1SGP I;  2GVI A;  5HI7 A;  2N17 A;  1OVO A;  1HPT A;  2JYY A;  3CXL A;  1CGI I;  2L8E A;  1YU6 C;  4HGU A;  2DKV A;  3KY9 A;  1MT1 A;  2JXD A;  1SGR I;  1HDL A;  2ORV A;  5CCM A;  2ENN A;  5FUY A;  1Y8F A;  2GKV A;  1CE3 A;  1NXU A;  1SGN I;  3QTL D;  3VE5 A;  2NU0 I;  3TJQ A;  2CWF A;  1FY7 A;  1LR7 A;  3VDU A;  1WKX A;  1AN1 I;  1WGT A;  5E3R A;  4UXH A;  3TOB A;  5CCL A;  5J8C A;  2ELI A;  2KMO A;  2LEO A;  3TO9 A;  3GOX A;  3UGL A;  1M8C A;  1IY6 A;  1R0R I;  1TBO A;  1TIH A;  2GKT I;  1Y1B A;  3UEJ A;  1P9G A;  1K7V A;  1K7U A;  1CSO I;  1FAR A;  1TGS I;  2CWG A;  2JW6 A;  2KCX A;  2WGC A;  1MJB A;  3OXL A;  4WP4 A;  2YQP A;  3SEK C;  1BMO A;  2M5X A;  2UVO A;  2JZM A;  2W0T A;  3UOE A;  1CHO I;  1ULM A;  1TBR R;  1SGQ I;  2SGD I;  3TO6 A;  1TBQ R;  1LR9 A;  2F3C I;  1KBF A;  2LB7 A;  1CT2 I;  2RC4 A;  2QPO A;  1X74 A;  1IW4 A;  4OVO A;  2J9R A;  1U5K A;  1TOT A;  1V1H A;  2KMR A;  2V1C A;  3PDN A;  5FUX A;  1IY5 A;  2JA1 A;  3R5B A;  2P6A C;  4A24 A;  1TUS A;  2LUY A;  2ODD A;  1FYB A;  3OL0 A;  1ULK A;  2QQ0 A;  2V53 A;  1PTR A;  1WGC A;  1X4S A;  5DAE A;  3OVO A;  4FKD A;  1S20 A;  3SGB I;  1UHA A;  2ROW A;  5E3Q A;  3SGQ I;  1DS3 I;  1P9Z A;  3D00 A;  4GI3 C;  3BJI A;  1Z2I A;  3UGI A;  1HJA I;  4JCV E;  1PCE A;  4UXI A;  9WGA A;  3UFF A;  1H0Z A;  1CGJ I;  7WGA A;  1SGE I;  2NU1 I;  2L7X A;  3FSX A;  4UXJ A;  4B6D A;  2KMQ A;  5JHW C;  1UUC A;  2NU3 I;  2FNF X;  1Z7K B;  2DIP A;  4L9M A;  1R79 A;  2OD1 A;  1VDD A;  2NU2 I;  1Q9B A; 
#chains in the Genus database with same CATH homology
 2KMP A;  2WCY A;  2J87 A;  1M8B A;  5FUV A;  2K9H A;  2ENZ A;  5FUW A;  2SGF I;  1SGY I;  2YUU A;  2ORW A;  2SGE I;  3MEK A;  2ARP F;  4SGB I;  1N13 A;  2QQE A;  1CT0 I;  1W3S A;  3B4V C;  2N52 A;  2QQD A;  5EX3 A;  1PPF I;  5EX0 A;  2V1C C;  1CT4 I;  1PJU A;  1TBN A;  2XRC A;  2E5R A;  2VRW B;  1Y1C A;  2GKR I;  1XX6 A;  1BUS A;  2B0U C;  1FAQ A;  1KMA A;  1NUB A;  3UEY A;  3E59 A;  3UGD A;  1UVG A;  2OVO A;  2B8T A;  2A20 A;  2DB6 A;  3QWP A;  2WVJ A;  3E2I A;  1XA6 A;  2NU4 I;  1LR8 A;  2N71 A;  3RU0 A;  2CJS C;  2QQC A;  3VDP A;  1TUR A;  1RFH A;  2E73 A;  1V1I A;  1XBT A;  4E1R A;  1YTP A;  1OYV I;  1DS2 I;  1SGD I;  2BUS A;  1KBE A;  2N1A B;  3HH2 C;  5HQ8 A;  2SGQ I;  2SGP I;  2ERW A;  1UVF A;  2UZ3 A;  3OXG A;  1OMT A;  1OMU A;  3OXF A;  1W4R A;  4E1P A;  1PTQ A;  3FC3 A;  1SGP I;  2GVI A;  5HI7 A;  2N17 A;  1OVO A;  1HPT A;  2JYY A;  3CXL A;  1CGI I;  2L8E A;  1YU6 C;  4HGU A;  3KY9 A;  1MT1 A;  2JXD A;  1SGR I;  1HDL A;  2ORV A;  5CCM A;  2ENN A;  5FUY A;  1Y8F A;  2GKV A;  1CE3 A;  3QTL D;  1SGN I;  3VE5 A;  2NU0 I;  3TJQ A;  1LR7 A;  3VDU A;  1AN1 I;  4UXH A;  5CCL A;  2ELI A;  2KMO A;  2LEO A;  3GOX A;  3UGL A;  1M8C A;  1IY6 A;  1R0R I;  1TBO A;  1TIH A;  2GKT I;  1Y1B A;  3UEJ A;  1CSO I;  1FAR A;  1TGS I;  2JW6 A;  2KCX A;  3OXL A;  2YQP A;  3SEK C;  1BMO A;  2M5X A;  2W0T A;  2JZM A;  1CHO I;  1TBR R;  1SGQ I;  2SGD I;  1TBQ R;  1LR9 A;  2F3C I;  1KBF A;  1CT2 I;  2QPO A;  1X74 A;  1IW4 A;  4OVO A;  2J9R A;  1U5K A;  1TOT A;  1V1H A;  2KMR A;  2V1C A;  3PDN A;  5FUX A;  1IY5 A;  2JA1 A;  2P6A C;  4A24 A;  1TUS A;  2LUY A;  2ODD A;  1FYB A;  3OL0 A;  2QQ0 A;  2V53 A;  1PTR A;  1X4S A;  5DAE A;  3OVO A;  4FKD A;  3SGB I;  2ROW A;  3SGQ I;  1DS3 I;  3D00 A;  4GI3 C;  3BJI A;  3UGI A;  1H0Z A;  1HJA I;  4JCV E;  1PCE A;  4UXI A;  3UFF A;  1CGJ I;  1SGE I;  2NU1 I;  2L7X A;  4UXJ A;  4B6D A;  2KMQ A;  5JHW C;  1UUC A;  2NU3 I;  2FNF X;  1Z7K B;  2DIP A;  4L9M A;  1R79 A;  2OD1 A;  1VDD A;  2NU2 I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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