2NU2I

Accommodation of positively-charged residues in a hydrophobic specificity pocket: crystal structures of sgpb in complex with omtky3 variants lys18i and arg18i
Total Genus 14
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
51
structure length
51
Chain Sequence
VDCSEYPKPACTREYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords Streptogrisin B, Protease B
publication title Accommodation of positively-charged residues in a hydrophobic specificity pocket: Crystal structures of SGPB in complex with OMTKY3 variants Lys18I and Arg18I
rcsb
source organism Meleagris gallopavo
total genus 14
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 2006-11-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 2nu2I00
1NUBA 3SGBI 4HGUA 1LR7A 2BUSA 3TJQA 1CGII 1CT2I 1KMAA 1TBQR 3QTLD 2KCXA 1TURA 1FYBA 1TUSA 2JZMA 1MT1A 2JYYA 2QQCA 1M8CA 1M8BA 2V53A 1IY5A 2ERWA 1UUCA 2ARPF 1UVFA 1LR9A 3HH2C 1YTPA 2KMQA 1IY6A 3OVOA 1SGQI 1TIHA 4GI3C 1CSOI 1TGSI 2GKRI 1CT0I 2SGDI 2SGFI 1OYVI 2N17A 1LR8A 2XRCA 2WCYA 1CHOI 1DS3I 2B0UC 2SGPI 1SGNI 1CT4I 1OVOA 1UVGA 1HJAI 5JHWC 4SGBI 2KMOA 2JXDA 1H0ZA 2SGEI 1SGDI 1PPFI 1HDLA 1SGRI 2M5XA 1TBRR 1PCEA 1Y1BA 2LEOA 1Z7KB 1PJUA 1BMOA 1SGYI 1SGPI 1Y1CA 1BUSA 2GKVA 2GKTI 2P6AC 2NU4I 3B4VC 1DS2I 1OMUA 2NU2I 2SGQI 2NU3I 2NU1I 5DAEA 2KMPA 1CGJI 2NU0I 1R0RI 3SGQI 2N71A 2QQDA 3SEKC 4OVOA 1SGEI 1AN1I 1N13A 2F3CI 2KMRA 1YU6C 1OMTA 1IW4A 2OVOA 1CE3A 1HPTA 2N52A
chains in the Genus database with same CATH superfamily
1NUBA 2ORVA 2ORWA 3TO7A 3SGBI 2PQ8A 4HGUA 1LR7A 2BUSA 3TJQA 1CGII 1U5KA 5E3QA 1CT2I 1KMAA 5FUVA 2ENZA 1TBQR 1Z2IA 1XBTA 2GVIA 3UGDA 1Y8FA 2A20A 3OXGA 3QTLD 2KCXA 1NXUA 1TURA 1WTJA 2OU2A 3UOEA 5J8CA 2L8EA 1V1IA 1FYBA 5CCMA 1MJBA 1TUSA 2JZMA 1MT1A 2JYYA 3UEYA 1X74A 5E3RA 2QQCA 1M8CA 1M8BA 2CWFA 2V53A 1HEVA 1IY5A 2Y0MA 1ULKA 1XA6A 2ERWA 1W3SA 5EX0A 1UUCA 2ARPF 2LUYA 2RC4A 1KBFA 3UGLA 2DB6A 5HQ8A 1UVFA 3UGIA 1LR9A 5HI7A 1KBEA 3HH2C 1YTPA 2J87A 2JA1A 2E5RA 1TOTA 2KMQA 1IY6A 3OVOA 2N52A 1VDDA 1SGQI 3OXLA 1FARA 3R5CA 1TIHA 1TBNA 4FKDA 2V1CC 4GI3C 1CSOI 3R5AA 9WGAA 3QAHA 4E1PA 1W4RA 2GKRI 1CT0I 2SGDI 2WVJA 2SGFI 1TBOA 1OYVI 2N17A 1LR8A 2XRCA 2WCYA 1CHOI 3E2IA 1DS3I 2B0UC 1X4SA 2CWGA 2SGPI 2VRWB 2WGCA 1SGNI 1PTRA 3CXLA 1K7UA 2ODDA 1P9GA 4L9MA 3TO6A 3VE5A 1CT4I 1OVOA 1UVGA 1HJAI 5E3PA 2GIVA 3QWPA 5JHWC 1XX6A 4SGBI 3GOXA 2J9RA 2KMOA 2UZ3A 5EX3A 2JXDA 2UVOA 1H0ZA 2SGEI 1CE3A 1SGDI 2CWHA 1PPFI 3R5DA 1HDLA 2L7XA 3TOAA 1SGRI 2LB7A 3D00A 1FAQA 2M5XA 1WGTA 1TBRR 2V1CA 4E1RA 1PCEA 1Y1BA 3KY9A 1WGCA 3RU0A 2OZUA 2LEOA 3MEKA 2DIPA 1Z7KB 3UEJA 5FUYA 4UXHA 1PJUA 2DKVA 2N1AB 1BMOA 1Q9BA 1SGYI 2YUUA 5FUWA 1FY7A 4AMLA 3FSYA 1RFHA 1SGPI 1Y1CA 2E73A 2FNFX 4DNCA 5CCLA 1ULMA 3E59A 1BUSA 2GKVA 2GKTI 2P6AC 4MPIA 4B6DA 2NU4I 2ROWA 3TOBA 3B4VC 1DS2I 3VDUA 1OMUA 2NU2I 2QPOA 2SGQI 3UFFA 3OXFA 2NU3I 2NU1I 3R5BA 5DAEA 7WGAA 1MJ9A 2ELIA 3PDNA 5J8FA 4JCVE 1ULNA 3TO9A 1K7VA 2KMPA 3VDPA 1CGJI 4A24A 1PTQA 2NU0I 2X52A 1R0RI 5FUXA 2B8TA 4WP4A 3SGQI 2N71A 2RIJA 2QQDA 1K7TA 3SEKC 2QQ0A 1R79A 2QQEA 2X3TA 3OL0A 4OVOA 2CJSC 1SGEI 1WKXA 3FSXA 1AN1I 2JW6A 1N13A 2K9HA 3FC3A 3BJIA 1P9ZA 1V1HA 2F3CI 2KMRA 1YU6C 2YQPA 1OMTA 2ENNA 1IW4A 4UXIA 1UHAA 4UXJA 1S20A 2OD1A 2OVOA 2W0TA 1HPTA 1TGSI 1MJAA
chains in the Genus database with same CATH topology
1NUBA 2ORVA 2ORWA 3SGBI 4HGUA 1LR7A 2BUSA 3TJQA 1CGII 1U5KA 1CT2I 1KMAA 5FUVA 2ENZA 1TBQR 3UGDA 1XBTA 2GVIA 1Y8FA 2A20A 3OXGA 3QTLD 2KCXA 1TURA 2L8EA 1V1IA 1FYBA 5CCMA 1TUSA 2JZMA 1MT1A 2JYYA 3UEYA 1X74A 2QQCA 1M8CA 1M8BA 2V53A 1IY5A 1XA6A 2ERWA 1W3SA 5EX0A 1UUCA 2ARPF 2LUYA 1KBFA 3UGLA 2DB6A 5HQ8A 1UVFA 3UGIA 1LR9A 5HI7A 1KBEA 3HH2C 1YTPA 2J87A 2JA1A 2E5RA 1TOTA 2KMQA 1IY6A 3OVOA 2N52A 1VDDA 1SGQI 3OXLA 1FARA 4FKDA 1TIHA 1TBNA 2V1CC 4GI3C 1CSOI 4E1PA 1W4RA 2GKRI 1CT0I 2SGDI 2WVJA 2SGFI 1TBOA 1OYVI 2N17A 1LR8A 2XRCA 2WCYA 1CHOI 3E2IA 1DS3I 2B0UC 1X4SA 3CXLA 2SGPI 2VRWB 1SGNI 1PTRA 4L9MA 2ODDA 3VE5A 1CT4I 1OVOA 1UVGA 1HJAI 5JHWC 3QWPA 1XX6A 4SGBI 3GOXA 2J9RA 2KMOA 2UZ3A 5EX3A 2JXDA 1H0ZA 2SGEI 1SGDI 1PPFI 1HDLA 2L7XA 1SGRI 3D00A 1FAQA 2M5XA 1TBRR 2V1CA 4E1RA 1PCEA 1Y1BA 3KY9A 3RU0A 3MEKA 2LEOA 2DIPA 1Z7KB 3UEJA 5FUYA 4UXHA 1PJUA 2N1AB 1BMOA 1SGYI 2YUUA 5FUWA 1RFHA 1SGPI 1Y1CA 2E73A 2FNFX 5CCLA 3E59A 1BUSA 2GKVA 2GKTI 2P6AC 4B6DA 2NU4I 2ROWA 3B4VC 1DS2I 3VDUA 1OMUA 2NU2I 2QPOA 2SGQI 3UFFA 3OXFA 2NU3I 2NU1I 5DAEA 2ELIA 3PDNA 4JCVE 2KMPA 3VDPA 1CGJI 4A24A 1PTQA 2NU0I 1R0RI 5FUXA 2B8TA 3SGQI 2N71A 2QQDA 3SEKC 2QQ0A 1R79A 2QQEA 3OL0A 4OVOA 2CJSC 1SGEI 1AN1I 2JW6A 1N13A 2K9HA 3FC3A 3BJIA 1V1HA 2F3CI 2KMRA 1YU6C 2YQPA 1OMTA 2ENNA 1IW4A 4UXIA 4UXJA 2OD1A 2OVOA 2W0TA 1CE3A 1HPTA 1TGSI
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NUB A;  3SGB I;  4HGU A;  1LR7 A;  2BUS A;  3TJQ A;  1CGI I;  1CT2 I;  1KMA A;  1TBQ R;  3QTL D;  2KCX A;  1TUR A;  1FYB A;  1TUS A;  2JZM A;  1MT1 A;  2JYY A;  2QQC A;  1M8C A;  1M8B A;  2V53 A;  1IY5 A;  2ERW A;  1UUC A;  2ARP F;  1UVF A;  1LR9 A;  3HH2 C;  1YTP A;  2KMQ A;  1IY6 A;  3OVO A;  1SGQ I;  1TIH A;  4GI3 C;  1CSO I;  1TGS I;  2GKR I;  1CT0 I;  2SGD I;  2SGF I;  1OYV I;  2N17 A;  1LR8 A;  2XRC A;  2WCY A;  1CHO I;  1DS3 I;  2B0U C;  2SGP I;  1SGN I;  1CT4 I;  1OVO A;  1UVG A;  1HJA I;  5JHW C;  4SGB I;  2KMO A;  2JXD A;  1H0Z A;  2SGE I;  1SGD I;  1PPF I;  1HDL A;  1SGR I;  2M5X A;  1TBR R;  1PCE A;  1Y1B A;  2LEO A;  1Z7K B;  1PJU A;  1BMO A;  1SGY I;  1SGP I;  1Y1C A;  1BUS A;  2GKV A;  2GKT I;  2P6A C;  2NU4 I;  3B4V C;  1DS2 I;  1OMU A;  2NU2 I;  2SGQ I;  2NU3 I;  2NU1 I;  5DAE A;  2KMP A;  1CGJ I;  2NU0 I;  1R0R I;  3SGQ I;  2N71 A;  2QQD A;  3SEK C;  4OVO A;  1SGE I;  1AN1 I;  1N13 A;  2F3C I;  2KMR A;  1YU6 C;  1OMT A;  1IW4 A;  2OVO A;  1CE3 A;  1HPT A;  2N52 A; 
#chains in the Genus database with same CATH topology
 1NUB A;  2ORV A;  2ORW A;  3TO7 A;  3SGB I;  2PQ8 A;  4HGU A;  1LR7 A;  2BUS A;  3TJQ A;  1CGI I;  1U5K A;  5E3Q A;  1CT2 I;  1KMA A;  5FUV A;  2ENZ A;  1TBQ R;  1Z2I A;  1XBT A;  2GVI A;  3UGD A;  1Y8F A;  2A20 A;  3OXG A;  3QTL D;  2KCX A;  1NXU A;  1TUR A;  1WTJ A;  2OU2 A;  3UOE A;  5J8C A;  2L8E A;  1V1I A;  1FYB A;  5CCM A;  1MJB A;  1TUS A;  2JZM A;  1MT1 A;  2JYY A;  3UEY A;  1X74 A;  5E3R A;  2QQC A;  1M8C A;  1M8B A;  2CWF A;  2V53 A;  1HEV A;  1IY5 A;  2Y0M A;  1ULK A;  1XA6 A;  2ERW A;  1W3S A;  5EX0 A;  1UUC A;  2ARP F;  2LUY A;  2RC4 A;  1KBF A;  3UGL A;  2DB6 A;  5HQ8 A;  1UVF A;  3UGI A;  1LR9 A;  5HI7 A;  1KBE A;  3HH2 C;  1YTP A;  2J87 A;  2JA1 A;  2E5R A;  1TOT A;  2KMQ A;  1IY6 A;  3OVO A;  2N52 A;  1VDD A;  1SGQ I;  3OXL A;  1FAR A;  3R5C A;  1TIH A;  1TBN A;  4FKD A;  2V1C C;  4GI3 C;  1CSO I;  3R5A A;  9WGA A;  3QAH A;  4E1P A;  1W4R A;  2GKR I;  1CT0 I;  2SGD I;  2WVJ A;  2SGF I;  1TBO A;  1OYV I;  2N17 A;  1LR8 A;  2XRC A;  2WCY A;  1CHO I;  3E2I A;  1DS3 I;  2B0U C;  1X4S A;  2CWG A;  2SGP I;  2VRW B;  2WGC A;  1SGN I;  1PTR A;  3CXL A;  1K7U A;  2ODD A;  1P9G A;  4L9M A;  3TO6 A;  3VE5 A;  1CT4 I;  1OVO A;  1UVG A;  1HJA I;  5E3P A;  2GIV A;  3QWP A;  5JHW C;  1XX6 A;  4SGB I;  3GOX A;  2J9R A;  2KMO A;  2UZ3 A;  5EX3 A;  2JXD A;  2UVO A;  1H0Z A;  2SGE I;  1CE3 A;  1SGD I;  2CWH A;  1PPF I;  3R5D A;  1HDL A;  2L7X A;  3TOA A;  1SGR I;  2LB7 A;  3D00 A;  1FAQ A;  2M5X A;  1WGT A;  1TBR R;  2V1C A;  4E1R A;  1PCE A;  1Y1B A;  3KY9 A;  1WGC A;  3RU0 A;  2OZU A;  2LEO A;  3MEK A;  2DIP A;  1Z7K B;  3UEJ A;  5FUY A;  4UXH A;  1PJU A;  2DKV A;  2N1A B;  1BMO A;  1Q9B A;  1SGY I;  2YUU A;  5FUW A;  1FY7 A;  4AML A;  3FSY A;  1RFH A;  1SGP I;  1Y1C A;  2E73 A;  2FNF X;  4DNC A;  5CCL A;  1ULM A;  3E59 A;  1BUS A;  2GKV A;  2GKT I;  2P6A C;  4MPI A;  4B6D A;  2NU4 I;  2ROW A;  3TOB A;  3B4V C;  1DS2 I;  3VDU A;  1OMU A;  2NU2 I;  2QPO A;  2SGQ I;  3UFF A;  3OXF A;  2NU3 I;  2NU1 I;  3R5B A;  5DAE A;  7WGA A;  1MJ9 A;  2ELI A;  3PDN A;  5J8F A;  4JCV E;  1ULN A;  3TO9 A;  1K7V A;  2KMP A;  3VDP A;  1CGJ I;  4A24 A;  1PTQ A;  2NU0 I;  2X52 A;  1R0R I;  5FUX A;  2B8T A;  4WP4 A;  3SGQ I;  2N71 A;  2RIJ A;  2QQD A;  1K7T A;  3SEK C;  2QQ0 A;  1R79 A;  2QQE A;  2X3T A;  3OL0 A;  4OVO A;  2CJS C;  1SGE I;  1WKX A;  3FSX A;  1AN1 I;  2JW6 A;  1N13 A;  2K9H A;  3FC3 A;  3BJI A;  1P9Z A;  1V1H A;  2F3C I;  2KMR A;  1YU6 C;  2YQP A;  1OMT A;  2ENN A;  1IW4 A;  4UXI A;  1UHA A;  4UXJ A;  1S20 A;  2OD1 A;  2OVO A;  2W0T A;  1HPT A;  1TGS I;  1MJA A; 
#chains in the Genus database with same CATH homology
 1NUB A;  2ORV A;  2ORW A;  3SGB I;  4HGU A;  1LR7 A;  2BUS A;  3TJQ A;  1CGI I;  1U5K A;  1CT2 I;  1KMA A;  5FUV A;  2ENZ A;  1TBQ R;  3UGD A;  1XBT A;  2GVI A;  1Y8F A;  2A20 A;  3OXG A;  3QTL D;  2KCX A;  1TUR A;  2L8E A;  1V1I A;  1FYB A;  5CCM A;  1TUS A;  2JZM A;  1MT1 A;  2JYY A;  3UEY A;  1X74 A;  2QQC A;  1M8C A;  1M8B A;  2V53 A;  1IY5 A;  1XA6 A;  2ERW A;  1W3S A;  5EX0 A;  1UUC A;  2ARP F;  2LUY A;  1KBF A;  3UGL A;  2DB6 A;  5HQ8 A;  1UVF A;  3UGI A;  1LR9 A;  5HI7 A;  1KBE A;  3HH2 C;  1YTP A;  2J87 A;  2JA1 A;  2E5R A;  1TOT A;  2KMQ A;  1IY6 A;  3OVO A;  2N52 A;  1VDD A;  1SGQ I;  3OXL A;  1FAR A;  4FKD A;  1TIH A;  1TBN A;  2V1C C;  4GI3 C;  1CSO I;  4E1P A;  1W4R A;  2GKR I;  1CT0 I;  2SGD I;  2WVJ A;  2SGF I;  1TBO A;  1OYV I;  2N17 A;  1LR8 A;  2XRC A;  2WCY A;  1CHO I;  3E2I A;  1DS3 I;  2B0U C;  1X4S A;  3CXL A;  2SGP I;  2VRW B;  1SGN I;  1PTR A;  4L9M A;  2ODD A;  3VE5 A;  1CT4 I;  1OVO A;  1UVG A;  1HJA I;  5JHW C;  3QWP A;  1XX6 A;  4SGB I;  3GOX A;  2J9R A;  2KMO A;  2UZ3 A;  5EX3 A;  2JXD A;  1H0Z A;  2SGE I;  1SGD I;  1PPF I;  1HDL A;  2L7X A;  1SGR I;  3D00 A;  1FAQ A;  2M5X A;  1TBR R;  2V1C A;  4E1R A;  1PCE A;  1Y1B A;  3KY9 A;  3RU0 A;  3MEK A;  2LEO A;  2DIP A;  1Z7K B;  3UEJ A;  5FUY A;  4UXH A;  1PJU A;  2N1A B;  1BMO A;  1SGY I;  2YUU A;  5FUW A;  1RFH A;  1SGP I;  1Y1C A;  2E73 A;  2FNF X;  5CCL A;  3E59 A;  1BUS A;  2GKV A;  2GKT I;  2P6A C;  4B6D A;  2NU4 I;  2ROW A;  3B4V C;  1DS2 I;  3VDU A;  1OMU A;  2NU2 I;  2QPO A;  2SGQ I;  3UFF A;  3OXF A;  2NU3 I;  2NU1 I;  5DAE A;  2ELI A;  3PDN A;  4JCV E;  2KMP A;  3VDP A;  1CGJ I;  4A24 A;  1PTQ A;  2NU0 I;  1R0R I;  5FUX A;  2B8T A;  3SGQ I;  2N71 A;  2QQD A;  3SEK C;  2QQ0 A;  1R79 A;  2QQE A;  3OL0 A;  4OVO A;  2CJS C;  1SGE I;  1AN1 I;  2JW6 A;  1N13 A;  2K9H A;  3FC3 A;  3BJI A;  1V1H A;  2F3C I;  2KMR A;  1YU6 C;  2YQP A;  1OMT A;  2ENN A;  1IW4 A;  4UXI A;  4UXJ A;  2OD1 A;  2OVO A;  2W0T A;  1CE3 A;  1HPT A;  1TGS I; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...