2NUDA

The structure of the type iii effector avrb complexed with a high-affinity rin4 peptide
Total Genus 96
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
96
sequence length
296
structure length
291
Chain Sequence
FRALPGPSQRQLEVYDQCLIGAARWPDDKSNTPENRAYCQSMYNSIRSAGDEISRGGITSFEELWGRATEWRLSKLEPLYSAFASERTSDTDAVTPLVKPYKSVLARVVDHEDAHDEIMQDNLFGDLNVKVYRQTAYLHGNVIPLNTFRVATDTEYLRDRVAHLRTELGAKALKQHLQRYNPDRIDHTNASYLPIIKDHLNDLYRQAISSDLSQAELISLIARTHWWAASAMPDQRGSAAKAEFAARAIASAHGIELPPFRNGNVSDIEAMLSGEEEFVEKYRSLLDSDCF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Type III Effector Activation via Nucleotide Binding, Phosphorylation, and Host Target Interaction.
pubmed doi rcsb
source organism Pseudomonas syringae pv. glycinea
molecule tags Toxin/protein binding
molecule keywords Avirulence B protein
total genus 96
structure length 291
sequence length 296
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05394 AvrB_AvrC Avirulence protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3290.20 Mainly Alpha Orthogonal Bundle Fic-like fold Fic-like fold 2nudA01
1NH1A 2NUDA 2NUNA
chains in the Genus database with same CATH superfamily
2F6SA 2G03A 4PY3A 4NPSA 3SHGA 4X2DA 5EU0A 3SE5A 4X2EA 5JFZA 4N67A 3N3UA 4ITRA 2NUDA 4U07A 5CKLA 3CUCA 3ZLMA 4LU4A 4U0UA 4WGJA 2VY3A 1NH1A 3SN9A 4U0ZA 3LETA 4U0SA 5JJ6A 4U04A 5CMTA 5CGLA 3ZC7A 4XI8A 2JK8A 3ZCBA 5JFFA 2NUNA 5JJ7A 4M16A 3S6AA 4X2CA 2VZAA
chains in the Genus database with same CATH topology
1NH1A 2NUDA 2NUNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NH1 A;  2NUD A;  2NUN A; 
#chains in the Genus database with same CATH topology
 2F6S A;  2G03 A;  4PY3 A;  4NPS A;  3SHG A;  4X2D A;  5EU0 A;  3SE5 A;  4X2E A;  5JFZ A;  4N67 A;  3N3U A;  4ITR A;  2NUD A;  4U07 A;  5CKL A;  3CUC A;  3ZLM A;  4LU4 A;  4U0U A;  4WGJ A;  2VY3 A;  1NH1 A;  3SN9 A;  4U0Z A;  3LET A;  4U0S A;  5JJ6 A;  4U04 A;  5CMT A;  5CGL A;  3ZC7 A;  4XI8 A;  2JK8 A;  3ZCB A;  5JFF A;  2NUN A;  5JJ7 A;  4M16 A;  3S6A A;  4X2C A;  2VZA A; 
#chains in the Genus database with same CATH homology
 1NH1 A;  2NUD A;  2NUN A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...