2NUKA

Soluble domain of the rieske iron-sulfur protein from rhodobacter sphaeroides
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
141
structure length
141
Chain Sequence
LASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAPENLPIPLAKFIDETTIQLG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Ubiquinol-cytochrome c reductase iron-sulfur subunit
publication title Atomic resolution structures of rieske iron-sulfur protein: role of hydrogen bonds in tuning the redox potential of iron-sulfur clusters.
pubmed doi rcsb
source organism Rhodobacter sphaeroides
total genus 36
structure length 141
sequence length 141
ec nomenclature ec 7.1.1.8: Quinol--cytochrome-c reductase.
pdb deposition date 2006-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2nukA00
4QUPA 1UUVA 2NVGA 4HM0A 4NBGD 4NBBD 4HM2A 2HMLA 3L75E 1FQTA 1O7NA 4H0LD 3EQQA 2HMOA 2QJKC 2HMNA 4EMJB 5KLIC 1UUWA 4AAYB 2FYUE 2NVEA 3L72E 4QDFB 4P1BH 2GBXA 4PV1D 1NTZE 4NBHD 2IBZE 2XR8A 5CXMA 1NYKA 3EN1A 1KYOE 2HMMA 1O7MA 3FOUA 2HMJA 2YIUC 3D89A 2NWFA 4HJLA 1NTME 2GBWA 4HM6A 2B24A 2BCCE 1VM9A 2E74D 2ZT9D 4QCKA 3H1KE 1G8KB 2NVFA 4NBAD 4NBDD 1VCKA 1ZRTE 1NTKE 2XSOA 1Q90C 4H13D 1RFSA 1G8JB 2NUMA 2YVJB 3GKEA 3GCEA 4NB8D 3VCAA 3GOBA 3C0DA 3H1HE 4HM5A 4NBED 4QUQA 3VCPA 2QPZA 2ZYLA 3L70E 1O7WA 4HM3A 1L0NE 4NBCD 2D2CD 4P1CH 3N0QA 1WQLA 3GL0A 1SQXE 2XRXA 1NU1E 3DQYA 1SQPE 4HM4A 5KLVE 3GL2A 5HL4A 3L71E 4PD4E 1JM1A 2BMQA 3AZCA 2E4PA 3L74E 2A06E 3TGUE 2YFLA 4AIVA 4OGQD 2E76D 4NBFD 2DE6D 2I7FA 3GZYA 2XSHA 1KB9E 2FYNC 2DE5D 1ULIA 3CX5E 3GTSA 3GB4A 3VMID 4HM7A 1L0LE 1EG9A 1BE3E 1O7HA 4HM1A 2BMOA 5BOKA 2HMKA 1PPJE 1P84E 2DE7D 3H1IE 3H1JE 3VMGD 3L73E 1RIEA 2JZAA 3GZXA 1SQQE 3CWBE 4U3FE 1PP9E 5AEUA 2Q3WA 1NDOA 2B1XA 3BCCE 5KKZC 3CXHE 2QJYC 2YFJA 1SQBE 2NUKA 4QDCA 4QURA 1BCCE 1EZVE 2QJPC 4HM8A 1VF5D 3H1LE 2JO6A 1SJGA 4QDFA 3VMHD 2E75D 3GTEA 4HKVA 5AEWA 1SQVE 1ULJA 1O7PA 2CKFA 4H44D 4QDDA 2E4QA 2YFIA 4NB9D 2BMRA 1O7GA
chains in the Genus database with same CATH superfamily
4QUPA 1UUVA 2NVGA 4HM0A 4NBGD 4NBBD 4HM2A 2HMLA 3L75E 1FQTA 1O7NA 4H0LD 3EQQA 2HMOA 2QJKC 2HMNA 4EMJB 5KLIC 1UUWA 4AAYB 2FYUE 2NVEA 3L72E 4QDFB 4P1BH 2GBXA 4PV1D 1NTZE 4NBHD 2IBZE 2XR8A 5CXMA 1NYKA 3EN1A 1KYOE 2HMMA 1O7MA 3FOUA 2HMJA 2YIUC 3D89A 2NWFA 4HJLA 1NTME 2GBWA 4HM6A 2B24A 2BCCE 1VM9A 2E74D 2ZT9D 4QCKA 3H1KE 1G8KB 2NVFA 4NBAD 4NBDD 1VCKA 1ZRTE 1NTKE 2XSOA 1Q90C 4H13D 1RFSA 1G8JB 2NUMA 2YVJB 3GKEA 3GCEA 4NB8D 3VCAA 3GOBA 3C0DA 3H1HE 4HM5A 4NBED 4QUQA 3VCPA 2QPZA 2ZYLA 3L70E 1O7WA 4HM3A 1L0NE 4NBCD 2D2CD 4P1CH 3N0QA 1WQLA 3GL0A 1SQXE 2XRXA 1NU1E 3DQYA 1SQPE 4HM4A 5KLVE 3GL2A 5HL4A 3L71E 4PD4E 1JM1A 2BMQA 3AZCA 2E4PA 3L74E 2A06E 3TGUE 2YFLA 4AIVA 4OGQD 2E76D 4NBFD 2DE6D 2I7FA 3GZYA 2XSHA 1KB9E 2FYNC 2DE5D 1ULIA 3CX5E 3GTSA 3GB4A 3VMID 4HM7A 1L0LE 1EG9A 1BE3E 1O7HA 4HM1A 2BMOA 5BOKA 2HMKA 1PPJE 1P84E 2DE7D 3H1IE 3H1JE 3VMGD 3L73E 1RIEA 2JZAA 3GZXA 1SQQE 3CWBE 4U3FE 1PP9E 5AEUA 2Q3WA 1NDOA 2B1XA 3BCCE 5KKZC 3CXHE 2QJYC 2YFJA 1SQBE 2NUKA 4QDCA 4QURA 1BCCE 1EZVE 2QJPC 4HM8A 1VF5D 3H1LE 2JO6A 1SJGA 4QDFA 3VMHD 2E75D 3GTEA 4HKVA 5AEWA 1SQVE 1ULJA 1O7PA 2CKFA 4H44D 4QDDA 2E4QA 2YFIA 4NB9D 2BMRA 1O7GA
chains in the Genus database with same CATH topology
4QUPA 1UUVA 2NVGA 4HM0A 4NBGD 4NBBD 4HM2A 2HMLA 3L75E 1FQTA 1O7NA 4H0LD 3EQQA 2HMOA 2QJKC 2HMNA 4EMJB 5KLIC 1UUWA 4AAYB 2FYUE 2NVEA 3L72E 4QDFB 4P1BH 2GBXA 4PV1D 1NTZE 4NBHD 2IBZE 2XR8A 5CXMA 1NYKA 3EN1A 1KYOE 2HMMA 1O7MA 3FOUA 2HMJA 2YIUC 3D89A 2NWFA 4HJLA 1NTME 2GBWA 4HM6A 2B24A 2BCCE 1VM9A 2E74D 2ZT9D 4QCKA 3H1KE 1G8KB 2NVFA 4NBAD 4NBDD 1VCKA 1ZRTE 1NTKE 2XSOA 1Q90C 4H13D 1RFSA 1G8JB 2NUMA 2YVJB 3GKEA 3GCEA 4NB8D 3VCAA 3GOBA 3C0DA 3H1HE 4HM5A 4NBED 4QUQA 3VCPA 2QPZA 2ZYLA 3L70E 1O7WA 4HM3A 1L0NE 4NBCD 2D2CD 4P1CH 3N0QA 1WQLA 3GL0A 1SQXE 2XRXA 1NU1E 3DQYA 1SQPE 4HM4A 5KLVE 3GL2A 5HL4A 3L71E 4PD4E 1JM1A 2BMQA 3AZCA 2E4PA 3L74E 2A06E 3TGUE 2YFLA 4AIVA 4OGQD 2E76D 4NBFD 2DE6D 2I7FA 3GZYA 2XSHA 1KB9E 2FYNC 2DE5D 1ULIA 3CX5E 3GTSA 3GB4A 3VMID 4HM7A 1L0LE 1EG9A 1BE3E 1O7HA 4HM1A 2BMOA 5BOKA 2HMKA 1PPJE 1P84E 2DE7D 3H1IE 3H1JE 3VMGD 3L73E 1RIEA 2JZAA 3GZXA 1SQQE 3CWBE 4U3FE 1PP9E 5AEUA 2Q3WA 1NDOA 2B1XA 3BCCE 5KKZC 3CXHE 2QJYC 2YFJA 1SQBE 2NUKA 4QDCA 4QURA 1BCCE 1EZVE 2QJPC 4HM8A 1VF5D 3H1LE 2JO6A 1SJGA 4QDFA 3VMHD 2E75D 3GTEA 4HKVA 5AEWA 1SQVE 1ULJA 1O7PA 2CKFA 4H44D 4QDDA 2E4QA 2YFIA 4NB9D 2BMRA 1O7GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QUP A;  1UUV A;  2NVG A;  4HM0 A;  4NBG D;  4NBB D;  4HM2 A;  2HML A;  3L75 E;  1FQT A;  1O7N A;  4H0L D;  3EQQ A;  2HMO A;  2QJK C;  2HMN A;  4EMJ B;  5KLI C;  1UUW A;  4AAY B;  2FYU E;  2NVE A;  3L72 E;  4QDF B;  4P1B H;  2GBX A;  4PV1 D;  1NTZ E;  4NBH D;  2IBZ E;  2XR8 A;  5CXM A;  1NYK A;  3EN1 A;  1KYO E;  2HMM A;  1O7M A;  3FOU A;  2HMJ A;  2YIU C;  3D89 A;  2NWF A;  4HJL A;  1NTM E;  2GBW A;  4HM6 A;  2B24 A;  2BCC E;  1VM9 A;  2E74 D;  2ZT9 D;  4QCK A;  3H1K E;  1G8K B;  2NVF A;  4NBA D;  4NBD D;  1VCK A;  1ZRT E;  1NTK E;  2XSO A;  1Q90 C;  4H13 D;  1RFS A;  1G8J B;  2NUM A;  2YVJ B;  3GKE A;  3GCE A;  4NB8 D;  3VCA A;  3GOB A;  3C0D A;  3H1H E;  4HM5 A;  4NBE D;  4QUQ A;  3VCP A;  2QPZ A;  2ZYL A;  3L70 E;  1O7W A;  4HM3 A;  1L0N E;  4NBC D;  2D2C D;  4P1C H;  3N0Q A;  1WQL A;  3GL0 A;  1SQX E;  2XRX A;  1NU1 E;  3DQY A;  1SQP E;  4HM4 A;  5KLV E;  3GL2 A;  5HL4 A;  3L71 E;  4PD4 E;  1JM1 A;  2BMQ A;  3AZC A;  2E4P A;  3L74 E;  2A06 E;  3TGU E;  2YFL A;  4AIV A;  4OGQ D;  2E76 D;  4NBF D;  2DE6 D;  2I7F A;  3GZY A;  2XSH A;  1KB9 E;  2FYN C;  2DE5 D;  1ULI A;  3CX5 E;  3GTS A;  3GB4 A;  3VMI D;  4HM7 A;  1L0L E;  1EG9 A;  1BE3 E;  1O7H A;  4HM1 A;  2BMO A;  5BOK A;  2HMK A;  1PPJ E;  1P84 E;  2DE7 D;  3H1I E;  3H1J E;  3VMG D;  3L73 E;  1RIE A;  2JZA A;  3GZX A;  1SQQ E;  3CWB E;  4U3F E;  1PP9 E;  5AEU A;  2Q3W A;  1NDO A;  2B1X A;  3BCC E;  5KKZ C;  3CXH E;  2QJY C;  2YFJ A;  1SQB E;  2NUK A;  4QDC A;  4QUR A;  1BCC E;  1EZV E;  2QJP C;  4HM8 A;  1VF5 D;  3H1L E;  2JO6 A;  1SJG A;  4QDF A;  3VMH D;  2E75 D;  3GTE A;  4HKV A;  5AEW A;  1SQV E;  1ULJ A;  1O7P A;  2CKF A;  4H44 D;  4QDD A;  2E4Q A;  2YFI A;  4NB9 D;  2BMR A;  1O7G A; 
#chains in the Genus database with same CATH topology
 4QUP A;  1UUV A;  2NVG A;  4HM0 A;  4NBG D;  4NBB D;  4HM2 A;  2HML A;  3L75 E;  1FQT A;  1O7N A;  4H0L D;  3EQQ A;  2HMO A;  2QJK C;  2HMN A;  4EMJ B;  5KLI C;  1UUW A;  4AAY B;  2FYU E;  2NVE A;  3L72 E;  4QDF B;  4P1B H;  2GBX A;  4PV1 D;  1NTZ E;  4NBH D;  2IBZ E;  2XR8 A;  5CXM A;  1NYK A;  3EN1 A;  1KYO E;  2HMM A;  1O7M A;  3FOU A;  2HMJ A;  2YIU C;  3D89 A;  2NWF A;  4HJL A;  1NTM E;  2GBW A;  4HM6 A;  2B24 A;  2BCC E;  1VM9 A;  2E74 D;  2ZT9 D;  4QCK A;  3H1K E;  1G8K B;  2NVF A;  4NBA D;  4NBD D;  1VCK A;  1ZRT E;  1NTK E;  2XSO A;  1Q90 C;  4H13 D;  1RFS A;  1G8J B;  2NUM A;  2YVJ B;  3GKE A;  3GCE A;  4NB8 D;  3VCA A;  3GOB A;  3C0D A;  3H1H E;  4HM5 A;  4NBE D;  4QUQ A;  3VCP A;  2QPZ A;  2ZYL A;  3L70 E;  1O7W A;  4HM3 A;  1L0N E;  4NBC D;  2D2C D;  4P1C H;  3N0Q A;  1WQL A;  3GL0 A;  1SQX E;  2XRX A;  1NU1 E;  3DQY A;  1SQP E;  4HM4 A;  5KLV E;  3GL2 A;  5HL4 A;  3L71 E;  4PD4 E;  1JM1 A;  2BMQ A;  3AZC A;  2E4P A;  3L74 E;  2A06 E;  3TGU E;  2YFL A;  4AIV A;  4OGQ D;  2E76 D;  4NBF D;  2DE6 D;  2I7F A;  3GZY A;  2XSH A;  1KB9 E;  2FYN C;  2DE5 D;  1ULI A;  3CX5 E;  3GTS A;  3GB4 A;  3VMI D;  4HM7 A;  1L0L E;  1EG9 A;  1BE3 E;  1O7H A;  4HM1 A;  2BMO A;  5BOK A;  2HMK A;  1PPJ E;  1P84 E;  2DE7 D;  3H1I E;  3H1J E;  3VMG D;  3L73 E;  1RIE A;  2JZA A;  3GZX A;  1SQQ E;  3CWB E;  4U3F E;  1PP9 E;  5AEU A;  2Q3W A;  1NDO A;  2B1X A;  3BCC E;  5KKZ C;  3CXH E;  2QJY C;  2YFJ A;  1SQB E;  2NUK A;  4QDC A;  4QUR A;  1BCC E;  1EZV E;  2QJP C;  4HM8 A;  1VF5 D;  3H1L E;  2JO6 A;  1SJG A;  4QDF A;  3VMH D;  2E75 D;  3GTE A;  4HKV A;  5AEW A;  1SQV E;  1ULJ A;  1O7P A;  2CKF A;  4H44 D;  4QDD A;  2E4Q A;  2YFI A;  4NB9 D;  2BMR A;  1O7G A; 
#chains in the Genus database with same CATH homology
 4QUP A;  1UUV A;  2NVG A;  4HM0 A;  4NBG D;  4NBB D;  4HM2 A;  2HML A;  3L75 E;  1FQT A;  1O7N A;  4H0L D;  3EQQ A;  2HMO A;  2QJK C;  2HMN A;  4EMJ B;  5KLI C;  1UUW A;  4AAY B;  2FYU E;  2NVE A;  3L72 E;  4QDF B;  4P1B H;  2GBX A;  4PV1 D;  1NTZ E;  4NBH D;  2IBZ E;  2XR8 A;  5CXM A;  1NYK A;  3EN1 A;  1KYO E;  2HMM A;  1O7M A;  3FOU A;  2HMJ A;  2YIU C;  3D89 A;  2NWF A;  4HJL A;  1NTM E;  2GBW A;  4HM6 A;  2B24 A;  2BCC E;  1VM9 A;  2E74 D;  2ZT9 D;  4QCK A;  3H1K E;  1G8K B;  2NVF A;  4NBA D;  4NBD D;  1VCK A;  1ZRT E;  1NTK E;  2XSO A;  1Q90 C;  4H13 D;  1RFS A;  1G8J B;  2NUM A;  2YVJ B;  3GKE A;  3GCE A;  4NB8 D;  3VCA A;  3GOB A;  3C0D A;  3H1H E;  4HM5 A;  4NBE D;  4QUQ A;  3VCP A;  2QPZ A;  2ZYL A;  3L70 E;  1O7W A;  4HM3 A;  1L0N E;  4NBC D;  2D2C D;  4P1C H;  3N0Q A;  1WQL A;  3GL0 A;  1SQX E;  2XRX A;  1NU1 E;  3DQY A;  1SQP E;  4HM4 A;  5KLV E;  3GL2 A;  5HL4 A;  3L71 E;  4PD4 E;  1JM1 A;  2BMQ A;  3AZC A;  2E4P A;  3L74 E;  2A06 E;  3TGU E;  2YFL A;  4AIV A;  4OGQ D;  2E76 D;  4NBF D;  2DE6 D;  2I7F A;  3GZY A;  2XSH A;  1KB9 E;  2FYN C;  2DE5 D;  1ULI A;  3CX5 E;  3GTS A;  3GB4 A;  3VMI D;  4HM7 A;  1L0L E;  1EG9 A;  1BE3 E;  1O7H A;  4HM1 A;  2BMO A;  5BOK A;  2HMK A;  1PPJ E;  1P84 E;  2DE7 D;  3H1I E;  3H1J E;  3VMG D;  3L73 E;  1RIE A;  2JZA A;  3GZX A;  1SQQ E;  3CWB E;  4U3F E;  1PP9 E;  5AEU A;  2Q3W A;  1NDO A;  2B1X A;  3BCC E;  5KKZ C;  3CXH E;  2QJY C;  2YFJ A;  1SQB E;  2NUK A;  4QDC A;  4QUR A;  1BCC E;  1EZV E;  2QJP C;  4HM8 A;  1VF5 D;  3H1L E;  2JO6 A;  1SJG A;  4QDF A;  3VMH D;  2E75 D;  3GTE A;  4HKV A;  5AEW A;  1SQV E;  1ULJ A;  1O7P A;  2CKF A;  4H44 D;  4QDD A;  2E4Q A;  2YFI A;  4NB9 D;  2BMR A;  1O7G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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